BLASTX nr result
ID: Coptis24_contig00005435
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00005435 (1147 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus co... 211 e-108 ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|2... 208 e-100 ref|XP_004139217.1| PREDICTED: 5'-3' exoribonuclease 4-like [Cuc... 199 4e-96 ref|XP_004156447.1| PREDICTED: 5'-3' exoribonuclease 4-like, par... 199 4e-96 gb|ADN33909.1| 5'-3' exoribonuclease [Cucumis melo subsp. melo] 198 8e-96 >ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus communis] gi|223548213|gb|EEF49704.1| 5'->3' exoribonuclease, putative [Ricinus communis] Length = 964 Score = 211 bits (538), Expect(2) = e-108 Identities = 103/157 (65%), Positives = 115/157 (73%) Frame = -3 Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966 FYPYHYAPFASDLKGL DLEITFFLGEPFKPFDQLMGTLPA+SSNALPE YR LM D SS Sbjct: 497 FYPYHYAPFASDLKGLADLEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDSSS 556 Query: 965 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786 P+S F+P DFEIDMNGKRFAWQG+AKLPFI+ ER RNSVM D+ Sbjct: 557 PISRFFPLDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLESTLTEEERLRNSVMLDL 616 Query: 785 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675 LYVH HP+A ++ Y + LP +R P IDTN+ Sbjct: 617 LYVHPAHPMAAEVIAHYQGFNSLPQYQRKPWAIDTNA 653 Score = 207 bits (527), Expect(2) = e-108 Identities = 101/205 (49%), Positives = 136/205 (66%), Gaps = 6/205 (2%) Frame = -1 Query: 598 SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419 S GMNGYLWLSERN + SP+ G DIE+N VLN +YLNP +H HIPEPP GV MPE Sbjct: 654 SAGMNGYLWLSERNMWRSTIASPVNGFPDIEHNQVLNITYLNPINHRHIPEPPNGVVMPE 713 Query: 418 KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRN 245 K+L+ +DIKPFPMLWHED+ RRQQ R RPQV AI+G LL E+AHRL+KN +++ N + Sbjct: 714 KILKPLDIKPFPMLWHEDHGGRRQQGRERPQVARAIAGPLLGEAAHRLVKNTLNIRPNGS 773 Query: 244 TSGLLNHPPYSHVVSNKT----RPAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPF 77 +S L Y ++ N T RPAGP GYERG+ D ++++GHHN+ + + S SP Sbjct: 774 SSKFLEQQTYRNIPGNSTFNRPRPAGPSGYERGYSNDPNYYYGHHNYQQGL-MSNPRSPL 832 Query: 76 LNERQTAGRQDSGVQNTVPIRDSFQ 2 + ++ R + Q+ V + ++ Sbjct: 833 FSNGVSSNRHNFRTQDRVQYHEQYR 857 >ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|222838231|gb|EEE76596.1| predicted protein [Populus trichocarpa] Length = 948 Score = 208 bits (530), Expect(2) = e-100 Identities = 101/157 (64%), Positives = 117/157 (74%) Frame = -3 Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966 FYPYHYAPFASD+K L ++EITFFLGEPFKPFDQLMGTLPA+SSNALPE YR LM DPSS Sbjct: 497 FYPYHYAPFASDIKDLDEMEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDPSS 556 Query: 965 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786 P+ F+P+DFEIDMNGKRFAWQG+AKLPFI+ E+ RNSVM D+ Sbjct: 557 PIHQFFPSDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLERTLMEEEQVRNSVMRDL 616 Query: 785 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675 LYVH HPL+ Q+ Y Y+LPV ER+ L IDT + Sbjct: 617 LYVHPVHPLSQQVISYYHHNYRLPVSERIALKIDTRA 653 Score = 182 bits (463), Expect(2) = e-100 Identities = 88/165 (53%), Positives = 114/165 (69%) Frame = -1 Query: 598 SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419 S GMNGYLWLSERN + PSPI GL +E N VLN +YL P SH HIPEPP+GV MPE Sbjct: 654 SGGMNGYLWLSERNVWRSVVPSPINGLPTLEYNQVLNITYLTPSSHRHIPEPPEGVVMPE 713 Query: 418 KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISVNRNTS 239 K+L+ DIK FP LWHEDN RRQQ R RPQV A++G +L E+AHRL+KN +++ N S Sbjct: 714 KILKPTDIKLFPTLWHEDN-GRRQQGRERPQVPRAVAGPVLGEAAHRLVKNTLNIKPNGS 772 Query: 238 GLLNHPPYSHVVSNKTRPAGPPGYERGFMEDTSFHHGHHNHPRSI 104 + + N+ RPAGP GY RG+ +D ++H+ H+N+ + + Sbjct: 773 SSRGNYTF-----NRPRPAGPAGYGRGYGDDPNYHYAHYNNQQGL 812 >ref|XP_004139217.1| PREDICTED: 5'-3' exoribonuclease 4-like [Cucumis sativus] Length = 934 Score = 199 bits (505), Expect(2) = 4e-96 Identities = 100/157 (63%), Positives = 111/157 (70%) Frame = -3 Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966 +YPYHY+PFASDLK L DLEITFF+GEPFKPFDQLMGTLPA+SS ALPE YR+LM DPSS Sbjct: 466 YYPYHYSPFASDLKNLADLEITFFIGEPFKPFDQLMGTLPAASSTALPEKYRNLMTDPSS 525 Query: 965 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786 P+ FYP+DFEIDMNGKRF WQGVAKLPFI+ E+ RNSVM DM Sbjct: 526 PILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLEWSLTDEEKNRNSVMLDM 585 Query: 785 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675 LY H HPL+ QI Y QLP R IDTN+ Sbjct: 586 LYTHCTHPLSAQIFSYYQVASQLPPHARTCWVIDTNA 622 Score = 180 bits (457), Expect(2) = 4e-96 Identities = 89/168 (52%), Positives = 114/168 (67%), Gaps = 7/168 (4%) Frame = -1 Query: 598 SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419 S GMNGYLWL ERN SPI L DI+ N VLN +YLNP H HIPEPPKG +P+ Sbjct: 623 SGGMNGYLWLCERNVIRNVVQSPINSLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPK 682 Query: 418 KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRN 245 KVL +DIKPFP LWHEDNSSRR R RP+V GAI+G LL E+AHRL+KN +++ N + Sbjct: 683 KVLSSLDIKPFPTLWHEDNSSRRSHGRDRPRVPGAIAGPLLGEAAHRLVKNTLNIKSNGS 742 Query: 244 TSGLLNHPPYSH-----VVSNKTRPAGPPGYERGFMEDTSFHHGHHNH 116 +SG PYS + ++ R GP G+E G+ ED ++++GH+N+ Sbjct: 743 SSGFFEQ-PYSRNFPGPPMFSRPRQVGPSGFETGYGEDPNYNYGHYNN 789 >ref|XP_004156447.1| PREDICTED: 5'-3' exoribonuclease 4-like, partial [Cucumis sativus] Length = 685 Score = 199 bits (505), Expect(2) = 4e-96 Identities = 100/157 (63%), Positives = 111/157 (70%) Frame = -3 Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966 +YPYHY+PFASDLK L DLEITFF+GEPFKPFDQLMGTLPA+SS ALPE YR+LM DPSS Sbjct: 217 YYPYHYSPFASDLKNLADLEITFFIGEPFKPFDQLMGTLPAASSTALPEKYRNLMTDPSS 276 Query: 965 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786 P+ FYP+DFEIDMNGKRF WQGVAKLPFI+ E+ RNSVM DM Sbjct: 277 PILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLEWSLTDEEKNRNSVMLDM 336 Query: 785 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675 LY H HPL+ QI Y QLP R IDTN+ Sbjct: 337 LYTHCTHPLSAQIFSYYQVASQLPPHARTCWVIDTNA 373 Score = 180 bits (457), Expect(2) = 4e-96 Identities = 89/168 (52%), Positives = 114/168 (67%), Gaps = 7/168 (4%) Frame = -1 Query: 598 SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419 S GMNGYLWL ERN SPI L DI+ N VLN +YLNP H HIPEPPKG +P+ Sbjct: 374 SGGMNGYLWLCERNVIRNVVQSPINSLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPK 433 Query: 418 KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRN 245 KVL +DIKPFP LWHEDNSSRR R RP+V GAI+G LL E+AHRL+KN +++ N + Sbjct: 434 KVLSSLDIKPFPTLWHEDNSSRRSHGRDRPRVPGAIAGPLLGEAAHRLVKNTLNIKSNGS 493 Query: 244 TSGLLNHPPYSH-----VVSNKTRPAGPPGYERGFMEDTSFHHGHHNH 116 +SG PYS + ++ R GP G+E G+ ED ++++GH+N+ Sbjct: 494 SSGFFEQ-PYSRNFPGPPMFSRPRQVGPSGFETGYGEDPNYNYGHYNN 540 >gb|ADN33909.1| 5'-3' exoribonuclease [Cucumis melo subsp. melo] Length = 934 Score = 198 bits (503), Expect(2) = 8e-96 Identities = 99/157 (63%), Positives = 111/157 (70%) Frame = -3 Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966 +YPYHY+PFASDLK L DLEITFFLGEPFKPFDQLMGTLPA+SS ALPE YR+LM DPSS Sbjct: 466 YYPYHYSPFASDLKNLADLEITFFLGEPFKPFDQLMGTLPAASSTALPEKYRNLMTDPSS 525 Query: 965 PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786 P+ FYP+DFEIDMNGKRF WQGVAKLPFI+ E+ RNS+M D+ Sbjct: 526 PILEFYPSDFEIDMNGKRFLWQGVAKLPFIDERKLLAQTRRLEWSLTDEEKNRNSIMLDL 585 Query: 785 LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675 LY H HPL+ QI Y QLP R IDTN+ Sbjct: 586 LYTHCTHPLSAQIFSYYQVASQLPPHARTCWVIDTNA 622 Score = 180 bits (456), Expect(2) = 8e-96 Identities = 91/168 (54%), Positives = 116/168 (69%), Gaps = 7/168 (4%) Frame = -1 Query: 598 SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419 S GMNGYLWL ERN PSPI GL DI+ N VLN +YLNP H HIPEPPKG +P+ Sbjct: 623 SGGMNGYLWLCERNVIRNVVPSPIIGLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPK 682 Query: 418 KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRN 245 KVL +DIKPFP LWHEDNSSRR R RP+V GAI+G LL E+AHRL+KN +++ N + Sbjct: 683 KVLSSLDIKPFPTLWHEDNSSRRSHGRERPRVPGAIAGPLLGEAAHRLVKNTLNIKSNGS 742 Query: 244 TSGLLNHPPYSH-----VVSNKTRPAGPPGYERGFMEDTSFHHGHHNH 116 +SG PYS + ++ R G PG+E G+ ED ++++GH+N+ Sbjct: 743 SSGFFEQ-PYSRNFPGPPMFSRPRQVG-PGFETGYGEDPNYNYGHYNN 788