BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005435
         (1147 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus co...   211   e-108
ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|2...   208   e-100
ref|XP_004139217.1| PREDICTED: 5'-3' exoribonuclease 4-like [Cuc...   199   4e-96
ref|XP_004156447.1| PREDICTED: 5'-3' exoribonuclease 4-like, par...   199   4e-96
gb|ADN33909.1| 5'-3' exoribonuclease [Cucumis melo subsp. melo]       198   8e-96

>ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223548213|gb|EEF49704.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 964

 Score =  211 bits (538), Expect(2) = e-108
 Identities = 103/157 (65%), Positives = 115/157 (73%)
 Frame = -3

Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966
            FYPYHYAPFASDLKGL DLEITFFLGEPFKPFDQLMGTLPA+SSNALPE YR LM D SS
Sbjct: 497  FYPYHYAPFASDLKGLADLEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDSSS 556

Query: 965  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786
            P+S F+P DFEIDMNGKRFAWQG+AKLPFI+                  ER RNSVM D+
Sbjct: 557  PISRFFPLDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLESTLTEEERLRNSVMLDL 616

Query: 785  LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675
            LYVH  HP+A ++   Y  +  LP  +R P  IDTN+
Sbjct: 617  LYVHPAHPMAAEVIAHYQGFNSLPQYQRKPWAIDTNA 653



 Score =  207 bits (527), Expect(2) = e-108
 Identities = 101/205 (49%), Positives = 136/205 (66%), Gaps = 6/205 (2%)
 Frame = -1

Query: 598  SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419
            S GMNGYLWLSERN +     SP+ G  DIE+N VLN +YLNP +H HIPEPP GV MPE
Sbjct: 654  SAGMNGYLWLSERNMWRSTIASPVNGFPDIEHNQVLNITYLNPINHRHIPEPPNGVVMPE 713

Query: 418  KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRN 245
            K+L+ +DIKPFPMLWHED+  RRQQ R RPQV  AI+G LL E+AHRL+KN +++  N +
Sbjct: 714  KILKPLDIKPFPMLWHEDHGGRRQQGRERPQVARAIAGPLLGEAAHRLVKNTLNIRPNGS 773

Query: 244  TSGLLNHPPYSHVVSNKT----RPAGPPGYERGFMEDTSFHHGHHNHPRSITCSASESPF 77
            +S  L    Y ++  N T    RPAGP GYERG+  D ++++GHHN+ + +  S   SP 
Sbjct: 774  SSKFLEQQTYRNIPGNSTFNRPRPAGPSGYERGYSNDPNYYYGHHNYQQGL-MSNPRSPL 832

Query: 76   LNERQTAGRQDSGVQNTVPIRDSFQ 2
             +   ++ R +   Q+ V   + ++
Sbjct: 833  FSNGVSSNRHNFRTQDRVQYHEQYR 857


>ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|222838231|gb|EEE76596.1|
            predicted protein [Populus trichocarpa]
          Length = 948

 Score =  208 bits (530), Expect(2) = e-100
 Identities = 101/157 (64%), Positives = 117/157 (74%)
 Frame = -3

Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966
            FYPYHYAPFASD+K L ++EITFFLGEPFKPFDQLMGTLPA+SSNALPE YR LM DPSS
Sbjct: 497  FYPYHYAPFASDIKDLDEMEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDPSS 556

Query: 965  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786
            P+  F+P+DFEIDMNGKRFAWQG+AKLPFI+                  E+ RNSVM D+
Sbjct: 557  PIHQFFPSDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLERTLMEEEQVRNSVMRDL 616

Query: 785  LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675
            LYVH  HPL+ Q+   Y   Y+LPV ER+ L IDT +
Sbjct: 617  LYVHPVHPLSQQVISYYHHNYRLPVSERIALKIDTRA 653



 Score =  182 bits (463), Expect(2) = e-100
 Identities = 88/165 (53%), Positives = 114/165 (69%)
 Frame = -1

Query: 598  SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419
            S GMNGYLWLSERN +    PSPI GL  +E N VLN +YL P SH HIPEPP+GV MPE
Sbjct: 654  SGGMNGYLWLSERNVWRSVVPSPINGLPTLEYNQVLNITYLTPSSHRHIPEPPEGVVMPE 713

Query: 418  KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISVNRNTS 239
            K+L+  DIK FP LWHEDN  RRQQ R RPQV  A++G +L E+AHRL+KN +++  N S
Sbjct: 714  KILKPTDIKLFPTLWHEDN-GRRQQGRERPQVPRAVAGPVLGEAAHRLVKNTLNIKPNGS 772

Query: 238  GLLNHPPYSHVVSNKTRPAGPPGYERGFMEDTSFHHGHHNHPRSI 104
                +  +     N+ RPAGP GY RG+ +D ++H+ H+N+ + +
Sbjct: 773  SSRGNYTF-----NRPRPAGPAGYGRGYGDDPNYHYAHYNNQQGL 812


>ref|XP_004139217.1| PREDICTED: 5'-3' exoribonuclease 4-like [Cucumis sativus]
          Length = 934

 Score =  199 bits (505), Expect(2) = 4e-96
 Identities = 100/157 (63%), Positives = 111/157 (70%)
 Frame = -3

Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966
            +YPYHY+PFASDLK L DLEITFF+GEPFKPFDQLMGTLPA+SS ALPE YR+LM DPSS
Sbjct: 466  YYPYHYSPFASDLKNLADLEITFFIGEPFKPFDQLMGTLPAASSTALPEKYRNLMTDPSS 525

Query: 965  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786
            P+  FYP+DFEIDMNGKRF WQGVAKLPFI+                  E+ RNSVM DM
Sbjct: 526  PILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLEWSLTDEEKNRNSVMLDM 585

Query: 785  LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675
            LY H  HPL+ QI   Y    QLP   R    IDTN+
Sbjct: 586  LYTHCTHPLSAQIFSYYQVASQLPPHARTCWVIDTNA 622



 Score =  180 bits (457), Expect(2) = 4e-96
 Identities = 89/168 (52%), Positives = 114/168 (67%), Gaps = 7/168 (4%)
 Frame = -1

Query: 598  SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419
            S GMNGYLWL ERN       SPI  L DI+ N VLN +YLNP  H HIPEPPKG  +P+
Sbjct: 623  SGGMNGYLWLCERNVIRNVVQSPINSLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPK 682

Query: 418  KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRN 245
            KVL  +DIKPFP LWHEDNSSRR   R RP+V GAI+G LL E+AHRL+KN +++  N +
Sbjct: 683  KVLSSLDIKPFPTLWHEDNSSRRSHGRDRPRVPGAIAGPLLGEAAHRLVKNTLNIKSNGS 742

Query: 244  TSGLLNHPPYSH-----VVSNKTRPAGPPGYERGFMEDTSFHHGHHNH 116
            +SG     PYS       + ++ R  GP G+E G+ ED ++++GH+N+
Sbjct: 743  SSGFFEQ-PYSRNFPGPPMFSRPRQVGPSGFETGYGEDPNYNYGHYNN 789


>ref|XP_004156447.1| PREDICTED: 5'-3' exoribonuclease 4-like, partial [Cucumis sativus]
          Length = 685

 Score =  199 bits (505), Expect(2) = 4e-96
 Identities = 100/157 (63%), Positives = 111/157 (70%)
 Frame = -3

Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966
            +YPYHY+PFASDLK L DLEITFF+GEPFKPFDQLMGTLPA+SS ALPE YR+LM DPSS
Sbjct: 217  YYPYHYSPFASDLKNLADLEITFFIGEPFKPFDQLMGTLPAASSTALPEKYRNLMTDPSS 276

Query: 965  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786
            P+  FYP+DFEIDMNGKRF WQGVAKLPFI+                  E+ RNSVM DM
Sbjct: 277  PILEFYPSDFEIDMNGKRFQWQGVAKLPFIDERKLLAQTRRLEWSLTDEEKNRNSVMLDM 336

Query: 785  LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675
            LY H  HPL+ QI   Y    QLP   R    IDTN+
Sbjct: 337  LYTHCTHPLSAQIFSYYQVASQLPPHARTCWVIDTNA 373



 Score =  180 bits (457), Expect(2) = 4e-96
 Identities = 89/168 (52%), Positives = 114/168 (67%), Gaps = 7/168 (4%)
 Frame = -1

Query: 598 SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419
           S GMNGYLWL ERN       SPI  L DI+ N VLN +YLNP  H HIPEPPKG  +P+
Sbjct: 374 SGGMNGYLWLCERNVIRNVVQSPINSLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPK 433

Query: 418 KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRN 245
           KVL  +DIKPFP LWHEDNSSRR   R RP+V GAI+G LL E+AHRL+KN +++  N +
Sbjct: 434 KVLSSLDIKPFPTLWHEDNSSRRSHGRDRPRVPGAIAGPLLGEAAHRLVKNTLNIKSNGS 493

Query: 244 TSGLLNHPPYSH-----VVSNKTRPAGPPGYERGFMEDTSFHHGHHNH 116
           +SG     PYS       + ++ R  GP G+E G+ ED ++++GH+N+
Sbjct: 494 SSGFFEQ-PYSRNFPGPPMFSRPRQVGPSGFETGYGEDPNYNYGHYNN 540


>gb|ADN33909.1| 5'-3' exoribonuclease [Cucumis melo subsp. melo]
          Length = 934

 Score =  198 bits (503), Expect(2) = 8e-96
 Identities = 99/157 (63%), Positives = 111/157 (70%)
 Frame = -3

Query: 1145 FYPYHYAPFASDLKGLTDLEITFFLGEPFKPFDQLMGTLPASSSNALPEHYRSLMVDPSS 966
            +YPYHY+PFASDLK L DLEITFFLGEPFKPFDQLMGTLPA+SS ALPE YR+LM DPSS
Sbjct: 466  YYPYHYSPFASDLKNLADLEITFFLGEPFKPFDQLMGTLPAASSTALPEKYRNLMTDPSS 525

Query: 965  PLSSFYPADFEIDMNGKRFAWQGVAKLPFINXXXXXXXXXXXXXXXXXXERARNSVMFDM 786
            P+  FYP+DFEIDMNGKRF WQGVAKLPFI+                  E+ RNS+M D+
Sbjct: 526  PILEFYPSDFEIDMNGKRFLWQGVAKLPFIDERKLLAQTRRLEWSLTDEEKNRNSIMLDL 585

Query: 785  LYVHKNHPLAGQISLLYTSYYQLPVVERLPLDIDTNS 675
            LY H  HPL+ QI   Y    QLP   R    IDTN+
Sbjct: 586  LYTHCTHPLSAQIFSYYQVASQLPPHARTCWVIDTNA 622



 Score =  180 bits (456), Expect(2) = 8e-96
 Identities = 91/168 (54%), Positives = 116/168 (69%), Gaps = 7/168 (4%)
 Frame = -1

Query: 598  SDGMNGYLWLSERNGYIQAFPSPIKGLRDIENNHVLNASYLNPHSHPHIPEPPKGVTMPE 419
            S GMNGYLWL ERN      PSPI GL DI+ N VLN +YLNP  H HIPEPPKG  +P+
Sbjct: 623  SGGMNGYLWLCERNVIRNVVPSPIIGLPDIQCNQVLNVTYLNPQKHKHIPEPPKGAIIPK 682

Query: 418  KVLRRIDIKPFPMLWHEDNSSRRQQARGRPQVQGAISGTLLAESAHRLLKNMISV--NRN 245
            KVL  +DIKPFP LWHEDNSSRR   R RP+V GAI+G LL E+AHRL+KN +++  N +
Sbjct: 683  KVLSSLDIKPFPTLWHEDNSSRRSHGRERPRVPGAIAGPLLGEAAHRLVKNTLNIKSNGS 742

Query: 244  TSGLLNHPPYSH-----VVSNKTRPAGPPGYERGFMEDTSFHHGHHNH 116
            +SG     PYS       + ++ R  G PG+E G+ ED ++++GH+N+
Sbjct: 743  SSGFFEQ-PYSRNFPGPPMFSRPRQVG-PGFETGYGEDPNYNYGHYNN 788