BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005365
         (220 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517743.1| conserved hypothetical protein [Ricinus comm...    62   6e-08
ref|XP_003518333.1| PREDICTED: E3 ubiquitin-protein ligase liste...    61   1e-07
ref|XP_003615959.1| RING finger protein [Medicago truncatula] gi...    61   1e-07
ref|NP_200649.1| HEAT/U-box domain-containing protein [Arabidops...    60   1e-07
ref|XP_002864573.1| binding protein [Arabidopsis lyrata subsp. l...    59   4e-07

>ref|XP_002517743.1| conserved hypothetical protein [Ricinus communis]
            gi|223543141|gb|EEF44675.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1912

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/52 (61%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
 Frame = +3

Query: 3    ETMAALGGAIYGLMIRALPAYVRDWFASLRDKSTS--IASFTKTCVSANLYV 152
            E MA+L GAI+GLM+R LPAYVR WF  LRD+STS  I +FT+T  S  L V
Sbjct: 1704 EKMASLSGAIFGLMLRVLPAYVRGWFTDLRDRSTSSLIETFTRTWCSPPLIV 1755


>ref|XP_003518333.1| PREDICTED: E3 ubiquitin-protein ligase listerin-like [Glycine max]
          Length = 1885

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 2/48 (4%)
 Frame = +3

Query: 9    MAALGGAIYGLMIRALPAYVRDWFASLRDKSTS--IASFTKTCVSANL 146
            +++L GAIYGLM++ LPAYVR WF+ LRD++TS  I SFT+TC S  L
Sbjct: 1679 ISSLAGAIYGLMLQVLPAYVRGWFSDLRDRNTSAVIESFTRTCCSPPL 1726


>ref|XP_003615959.1| RING finger protein [Medicago truncatula] gi|355517294|gb|AES98917.1|
            RING finger protein [Medicago truncatula]
          Length = 1683

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 30/50 (60%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
 Frame = +3

Query: 3    ETMAALGGAIYGLMIRALPAYVRDWFASLRDK--STSIASFTKTCVSANL 146
            E +++L GAIYGLM+  LPAYVR WF  LRD+  ST+I SFT+TC S  L
Sbjct: 1475 EKISSLAGAIYGLMLHVLPAYVRGWFNDLRDRNISTAIESFTRTCCSPPL 1524


>ref|NP_200649.1| HEAT/U-box domain-containing protein [Arabidopsis thaliana]
            gi|75309054|sp|Q9FGI1.1|LTN1_ARATH RecName: Full=E3
            ubiquitin-protein ligase listerin
            gi|10177018|dbj|BAB10256.1| unnamed protein product
            [Arabidopsis thaliana] gi|332009666|gb|AED97049.1|
            HEAT/U-box domain-containing protein [Arabidopsis
            thaliana]
          Length = 1873

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 29/48 (60%), Positives = 38/48 (79%), Gaps = 2/48 (4%)
 Frame = +3

Query: 9    MAALGGAIYGLMIRALPAYVRDWFASLRDKSTS--IASFTKTCVSANL 146
            MA+L GAIYGLM+R LPAYVR+WF+ +RD+S S  I +FT+T  S +L
Sbjct: 1667 MASLAGAIYGLMLRVLPAYVREWFSEMRDRSASSLIEAFTRTWCSPSL 1714


>ref|XP_002864573.1| binding protein [Arabidopsis lyrata subsp. lyrata]
            gi|297310408|gb|EFH40832.1| binding protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1871

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/48 (58%), Positives = 38/48 (79%), Gaps = 2/48 (4%)
 Frame = +3

Query: 9    MAALGGAIYGLMIRALPAYVRDWFASLRDKSTS--IASFTKTCVSANL 146
            MA+L GAIYGLM+R LPAYVR+WF+ +RD+S S  I +FT++  S +L
Sbjct: 1665 MASLAGAIYGLMLRVLPAYVREWFSEMRDRSASSLIEAFTRSWCSPSL 1712