BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005348
         (1368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285757.1| PREDICTED: uncharacterized protein LOC100265...   336   1e-89
emb|CBI16564.3| unnamed protein product [Vitis vinifera]              317   6e-84
ref|XP_002303980.1| predicted protein [Populus trichocarpa] gi|2...   316   1e-83
emb|CAA18233.1| putative protein [Arabidopsis thaliana] gi|72694...   314   4e-83
ref|NP_567745.1| antitermination NusB domain-containing protein ...   311   3e-82

>ref|XP_002285757.1| PREDICTED: uncharacterized protein LOC100265613 [Vitis vinifera]
          Length = 288

 Score =  336 bits (861), Expect = 1e-89
 Identities = 181/281 (64%), Positives = 212/281 (75%), Gaps = 1/281 (0%)
 Frame = -3

Query: 1324 MEGTSVL-SFNSTKPNINFTFFNSHSPYQHTQLVGFQYNHKKWSKKRVFLLTPRSSLLTP 1148
            M+  S+L S NS+KP+  F F +S S    T L      + K       L +PR+SL T 
Sbjct: 1    MDANSLLCSSNSSKPHFIFNFNHSSSCQFLTPLPTKLLINSK------LLSSPRTSLRTS 54

Query: 1147 ALVVAETIEKVTDTSPSSSSKDGLPKIDKSGRFCSPRAARELALSIAYASCLEGSDPIRL 968
            AL V + ++K       S  ++ LP+IDKSGRFCSPRAARELAL IAYA+CLEGSDP+RL
Sbjct: 55   ALTVEKPLDK------PSEPREMLPRIDKSGRFCSPRAARELALLIAYAACLEGSDPVRL 108

Query: 967  FEKRLNARREPGYEFNKSTLLEYNHMNFAGDPVSTQTXXXXXXXXXXXXXESAIEAEVLS 788
            FE+R+NARREPGYEF+K +LLEYNHM+F G PV+T+T             ESAIEAEVLS
Sbjct: 109  FERRMNARREPGYEFDKDSLLEYNHMSFGGPPVTTETVEEADELLRNNEKESAIEAEVLS 168

Query: 787  APPKLVYSKLILRLTKKMLVAVVQGWDKHVVVIDKVAPQNWKDEPAGRILEFCILHLAMA 608
            APPKLVY KLILR T+K+LVAVV  W+ HV+VIDKVAP NWK+EPAGRILE CILHLAM+
Sbjct: 169  APPKLVYGKLILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGRILELCILHLAMS 228

Query: 607  EIAILGTRHQIVINEAVDLAKRFCDGTAPRIINGCLRTFVR 485
            EIA+LGTRHQIVINEAVDLAKRFCDG APRIINGCLRTFV+
Sbjct: 229  EIAVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVK 269


>emb|CBI16564.3| unnamed protein product [Vitis vinifera]
          Length = 218

 Score =  317 bits (811), Expect = 6e-84
 Identities = 155/198 (78%), Positives = 173/198 (87%)
 Frame = -3

Query: 1078 LPKIDKSGRFCSPRAARELALSIAYASCLEGSDPIRLFEKRLNARREPGYEFNKSTLLEY 899
            LP+IDKSGRFCSPRAARELAL IAYA+CLEGSDP+RLFE+R+NARREPGYEF+K +LLEY
Sbjct: 2    LPRIDKSGRFCSPRAARELALLIAYAACLEGSDPVRLFERRMNARREPGYEFDKDSLLEY 61

Query: 898  NHMNFAGDPVSTQTXXXXXXXXXXXXXESAIEAEVLSAPPKLVYSKLILRLTKKMLVAVV 719
            NHM+F G PV+T+T             ESAIEAEVLSAPPKLVY KLILR T+K+LVAVV
Sbjct: 62   NHMSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVV 121

Query: 718  QGWDKHVVVIDKVAPQNWKDEPAGRILEFCILHLAMAEIAILGTRHQIVINEAVDLAKRF 539
              W+ HV+VIDKVAP NWK+EPAGRILE CILHLAM+EIA+LGTRHQIVINEAVDLAKRF
Sbjct: 122  DKWNSHVLVIDKVAPPNWKNEPAGRILELCILHLAMSEIAVLGTRHQIVINEAVDLAKRF 181

Query: 538  CDGTAPRIINGCLRTFVR 485
            CDG APRIINGCLRTFV+
Sbjct: 182  CDGAAPRIINGCLRTFVK 199


>ref|XP_002303980.1| predicted protein [Populus trichocarpa] gi|222841412|gb|EEE78959.1|
            predicted protein [Populus trichocarpa]
          Length = 218

 Score =  316 bits (809), Expect = 1e-83
 Identities = 153/198 (77%), Positives = 173/198 (87%)
 Frame = -3

Query: 1078 LPKIDKSGRFCSPRAARELALSIAYASCLEGSDPIRLFEKRLNARREPGYEFNKSTLLEY 899
            +PKIDKSGRFCSPRAARELAL I YA+CLEGSDPIRLFEKR+NARREPGYEF+K++LLEY
Sbjct: 2    MPKIDKSGRFCSPRAARELALLIIYAACLEGSDPIRLFEKRMNARREPGYEFDKASLLEY 61

Query: 898  NHMNFAGDPVSTQTXXXXXXXXXXXXXESAIEAEVLSAPPKLVYSKLILRLTKKMLVAVV 719
            NHM+F G PV+T+T             ESAIEAEVLSAPPKLVYSKL+LR T+K+LVAVV
Sbjct: 62   NHMSFGGPPVTTETVEEADELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVV 121

Query: 718  QGWDKHVVVIDKVAPQNWKDEPAGRILEFCILHLAMAEIAILGTRHQIVINEAVDLAKRF 539
              WD HV+VIDKV+P NWK+EPAGRILEFCILH+AM+EI +LGTRHQIVINEAVDLAKRF
Sbjct: 122  DKWDSHVLVIDKVSPPNWKNEPAGRILEFCILHMAMSEITVLGTRHQIVINEAVDLAKRF 181

Query: 538  CDGTAPRIINGCLRTFVR 485
            CDG  PRIINGCLRTF++
Sbjct: 182  CDGAGPRIINGCLRTFLK 199


>emb|CAA18233.1| putative protein [Arabidopsis thaliana] gi|7269489|emb|CAB79492.1|
            putative protein [Arabidopsis thaliana]
          Length = 286

 Score =  314 bits (804), Expect = 4e-83
 Identities = 176/296 (59%), Positives = 210/296 (70%), Gaps = 3/296 (1%)
 Frame = -3

Query: 1324 MEGT-SVLSFNSTKPNINFTFFNSHSPYQHTQLVGFQYNHKKWSKK--RVFLLTPRSSLL 1154
            MEGT S L  +S + +I FT  +S  P   T LV  +  +K+ S    R+FL   RS+L 
Sbjct: 1    MEGTFSPLCLHSHR-SIGFTLVDSLRP---TNLVSLRTGNKRSSSSSLRLFLSPTRSALR 56

Query: 1153 TPALVVAETIEKVTDTSPSSSSKDGLPKIDKSGRFCSPRAARELALSIAYASCLEGSDPI 974
            TP +    + E+V D          +PKIDKSGR  SPRAARELAL I YA+CLEGSDPI
Sbjct: 57   TPTI----SAEEVKDVP--------MPKIDKSGRLSSPRAARELALVILYAACLEGSDPI 104

Query: 973  RLFEKRLNARREPGYEFNKSTLLEYNHMNFAGDPVSTQTXXXXXXXXXXXXXESAIEAEV 794
            RLFEKR+NARREPGYEF+KS+LLEYNHM+F G PV T+T             ES IEAEV
Sbjct: 105  RLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEV 164

Query: 793  LSAPPKLVYSKLILRLTKKMLVAVVQGWDKHVVVIDKVAPQNWKDEPAGRILEFCILHLA 614
            LSAPPKLVYSKL+LR  KK+L AVV  WD HVV+I+K++P +WK  PAGRILEF ILHLA
Sbjct: 165  LSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLA 224

Query: 613  MAEIAILGTRHQIVINEAVDLAKRFCDGTAPRIINGCLRTFVRIHRESSVVPNIEV 446
            M+E+A+L TRH IVINEAVDLAKRFCDG+APRIINGCLRTFV+    +S    +E+
Sbjct: 225  MSEVAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRATTSTPQALEL 280


>ref|NP_567745.1| antitermination NusB domain-containing protein [Arabidopsis thaliana]
            gi|15450968|gb|AAK96755.1| putative protein [Arabidopsis
            thaliana] gi|30984514|gb|AAP42720.1| At4g26370
            [Arabidopsis thaliana] gi|332659789|gb|AEE85189.1|
            antitermination NusB domain-containing protein
            [Arabidopsis thaliana]
          Length = 301

 Score =  311 bits (797), Expect = 3e-82
 Identities = 169/281 (60%), Positives = 201/281 (71%), Gaps = 2/281 (0%)
 Frame = -3

Query: 1282 NINFTFFNSHSPYQHTQLVGFQYNHKKWSKK--RVFLLTPRSSLLTPALVVAETIEKVTD 1109
            +I FT  +S  P   T LV  +  +K+ S    R+FL   RS+L TP +    + E+V D
Sbjct: 30   SIGFTLVDSLRP---TNLVSLRTGNKRSSSSSLRLFLSPTRSALRTPTI----SAEEVKD 82

Query: 1108 TSPSSSSKDGLPKIDKSGRFCSPRAARELALSIAYASCLEGSDPIRLFEKRLNARREPGY 929
                      +PKIDKSGR  SPRAARELAL I YA+CLEGSDPIRLFEKR+NARREPGY
Sbjct: 83   VP--------MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGY 134

Query: 928  EFNKSTLLEYNHMNFAGDPVSTQTXXXXXXXXXXXXXESAIEAEVLSAPPKLVYSKLILR 749
            EF+KS+LLEYNHM+F G PV T+T             ES IEAEVLSAPPKLVYSKL+LR
Sbjct: 135  EFDKSSLLEYNHMSFGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLR 194

Query: 748  LTKKMLVAVVQGWDKHVVVIDKVAPQNWKDEPAGRILEFCILHLAMAEIAILGTRHQIVI 569
              KK+L AVV  WD HVV+I+K++P +WK  PAGRILEF ILHLAM+E+A+L TRH IVI
Sbjct: 195  FAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEVAVLETRHPIVI 254

Query: 568  NEAVDLAKRFCDGTAPRIINGCLRTFVRIHRESSVVPNIEV 446
            NEAVDLAKRFCDG+APRIINGCLRTFV+    +S    +E+
Sbjct: 255  NEAVDLAKRFCDGSAPRIINGCLRTFVKDRATTSTPQALEL 295