BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005337
         (1037 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95820.1| retrotransposon protein, putative, unclassified [...   410   e-112
gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]     409   e-112
gb|ABW74566.1| integrase [Boechera divaricarpa]                       383   e-104
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat...   382   e-103
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   381   e-103

>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  410 bits (1053), Expect = e-112
 Identities = 201/345 (58%), Positives = 265/345 (76%)
 Frame = +3

Query: 3    LKQAPRTWNSKIDGYFRQTGFSKSRSEPSLYIKKEGNELLIVCLYVDDLIYTGTSMKILQ 182
            LKQAPR W S+ID YF Q GF+KS SEP+LY+ K G ++LIV LYVDDLIYTG S K++Q
Sbjct: 785  LKQAPRVWYSQIDKYFIQKGFAKSISEPTLYVNKTGTDILIVSLYVDDLIYTGNSEKMMQ 844

Query: 183  DFKEAMMKEYEMTDLGLMKYFLGIQVQQSKGNISSLKKKYLEDLLKRFSMSNCKPISSPA 362
            DFK+ MM  YEM+DLGL+ YFLG++V QS   I   ++KY E++LK+F M NCK +++P 
Sbjct: 845  DFKKDMMHTYEMSDLGLLYYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPL 904

Query: 363  ALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPDIMYTVSLLSRFLSEPSKLHLAAAK 542
              NEK +  DGA KVD  +YRSLVGSLLYLT TRPDIM+  SLLSR++S PS+L+  AAK
Sbjct: 905  LPNEKQKARDGADKVDPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAK 964

Query: 543  RVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSLDDKKSTSGYAFCLGSKLIAWSSKK 722
            RVLRY++GT ++G+ Y   + + LI +TDSD AG LDD K TSGYAF LGS + +WS+KK
Sbjct: 965  RVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKGTSGYAFSLGSGMCSWSTKK 1024

Query: 723  QKIVALSSTEAEYIAVTDAICEGIWPRRILKDLQQEVKTPTTIFCDNMSAIATTKNPVFQ 902
            Q IVALSS EAEY+A + A+ + +W RRI++DL ++   PTTI+CD+ SAIA ++NPV  
Sbjct: 1025 QNIVALSSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAISENPVSH 1084

Query: 903  SRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADMLTKAVSMDK 1037
             RTKHI ++YHYIR  V++++V+L+F  T+EQLAD+ TKA+S +K
Sbjct: 1085 DRTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEK 1129


>gb|AAT47077.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1136

 Score =  409 bits (1051), Expect = e-112
 Identities = 202/345 (58%), Positives = 263/345 (76%)
 Frame = +3

Query: 3    LKQAPRTWNSKIDGYFRQTGFSKSRSEPSLYIKKEGNELLIVCLYVDDLIYTGTSMKILQ 182
            LKQAPR W S+ID YF Q GF+KS SEP LY+KK G ++LIV LYVDDLIYTG S K++Q
Sbjct: 779  LKQAPRAWYSQIDKYFIQKGFAKSISEPILYVKKTGTDILIVSLYVDDLIYTGNSEKLMQ 838

Query: 183  DFKEAMMKEYEMTDLGLMKYFLGIQVQQSKGNISSLKKKYLEDLLKRFSMSNCKPISSPA 362
            DFK+ MM  YEM+DLGL+ YFLG++V QS   I   ++KY E++LK+F M NCK +++P 
Sbjct: 839  DFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPL 898

Query: 363  ALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPDIMYTVSLLSRFLSEPSKLHLAAAK 542
              NEK +  DGA K D  +YRSLVGSLLYLT TRPDIM+  SLLSR++S PS+L+  AAK
Sbjct: 899  LPNEKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAK 958

Query: 543  RVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSLDDKKSTSGYAFCLGSKLIAWSSKK 722
            RVLRY++GT  +G+ Y   + + LI +TDSD AG LDD KSTSGYAF LGS + +WS+KK
Sbjct: 959  RVLRYIKGTAYYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLGSGMWSWSTKK 1018

Query: 723  QKIVALSSTEAEYIAVTDAICEGIWPRRILKDLQQEVKTPTTIFCDNMSAIATTKNPVFQ 902
            Q IVALSS EAEY+A + A+ + +W RRI++DL ++   PTTI+CD+ SAIA  +NPV  
Sbjct: 1019 QNIVALSSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAINENPVSH 1078

Query: 903  SRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADMLTKAVSMDK 1037
             RTKHI ++YHYIR  V++++V+L+F  T+EQLAD+ TKA+S +K
Sbjct: 1079 DRTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKEK 1123


>gb|ABW74566.1| integrase [Boechera divaricarpa]
          Length = 1165

 Score =  383 bits (984), Expect = e-104
 Identities = 185/346 (53%), Positives = 248/346 (71%), Gaps = 1/346 (0%)
 Frame = +3

Query: 3    LKQAPRTWNSKIDGYFRQTGFSKSRSEPSLYIKKEG-NELLIVCLYVDDLIYTGTSMKIL 179
            LKQAPR W +KID YF +TGF +S+SEP+LYIKK+G  ++L+VCLYVDD+IY G+S  ++
Sbjct: 799  LKQAPRAWYNKIDSYFAETGFERSKSEPTLYIKKQGAGDILVVCLYVDDMIYMGSSASLV 858

Query: 180  QDFKEAMMKEYEMTDLGLMKYFLGIQVQQSKGNISSLKKKYLEDLLKRFSMSNCKPISSP 359
             +FK +MM+++EMTDLGL+ +FLG++V+Q +  +   + KY  DLLKRF M+ C  + +P
Sbjct: 859  SEFKASMMEKFEMTDLGLLYFFLGLEVKQVEDGVFVSQHKYACDLLKRFDMAGCNAVETP 918

Query: 360  AALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPDIMYTVSLLSRFLSEPSKLHLAAA 539
              +NEKL   DG  K D   +RSLVG L+YLTHTRPDI + VS +SRF+  P+K H  AA
Sbjct: 919  MNVNEKLLAGDGTEKADATKFRSLVGGLIYLTHTRPDICFAVSAISRFMHGPTKQHFGAA 978

Query: 540  KRVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSLDDKKSTSGYAFCLGSKLIAWSSK 719
            KR+LRY+  T  +GL Y       L+ FTDSD AG + D+KSTSG+ F LGS  + WSSK
Sbjct: 979  KRLLRYIARTAEYGLWYCSVSKFKLVGFTDSDWAGCVQDRKSTSGHVFNLGSGAVCWSSK 1038

Query: 720  KQKIVALSSTEAEYIAVTDAICEGIWPRRILKDLQQEVKTPTTIFCDNMSAIATTKNPVF 899
            KQ + ALSS+EAEY A T A C+ +W RRIL D++QE +  TTIFCDN + IA  KNP +
Sbjct: 1039 KQNVTALSSSEAEYTAATAAACQAVWLRRILADIKQEQEKATTIFCDNKATIAMNKNPAY 1098

Query: 900  QSRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADMLTKAVSMDK 1037
              RTKHI ++ H+IR  V +  V L++ +TNEQ AD+LTKA+S +K
Sbjct: 1099 HGRTKHISIKVHFIRDLVSEGSVTLEYCSTNEQSADVLTKALSRNK 1144


>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108708461|gb|ABF96256.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1167

 Score =  382 bits (980), Expect = e-103
 Identities = 193/345 (55%), Positives = 251/345 (72%)
 Frame = +3

Query: 3    LKQAPRTWNSKIDGYFRQTGFSKSRSEPSLYIKKEGNELLIVCLYVDDLIYTGTSMKILQ 182
            LKQAPR W S+ID YF Q GF+KS SEP+LYI K G ++LIV LYVDDLIYTG S K++Q
Sbjct: 827  LKQAPRVWYSQIDKYFIQKGFAKSISEPTLYINKTGTDILIVSLYVDDLIYTGNSEKMMQ 886

Query: 183  DFKEAMMKEYEMTDLGLMKYFLGIQVQQSKGNISSLKKKYLEDLLKRFSMSNCKPISSPA 362
            DFK  MM  YEM+DLGL+ YFLG++V QS   I   ++KY E++LK+F M NCK +++P 
Sbjct: 887  DFKRDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKSVTTPL 946

Query: 363  ALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPDIMYTVSLLSRFLSEPSKLHLAAAK 542
              NEK +  DGA KVD  +YRSLVGSLLYLT TRPDIM+  SLLSR++S PS+L+  AAK
Sbjct: 947  LPNEKQKARDGADKVDPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAK 1006

Query: 543  RVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSLDDKKSTSGYAFCLGSKLIAWSSKK 722
            RVLRY++GT ++G+ Y   + + LI +TDSD AG LDD KSTSGYAF LG          
Sbjct: 1007 RVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYAFSLG---------- 1056

Query: 723  QKIVALSSTEAEYIAVTDAICEGIWPRRILKDLQQEVKTPTTIFCDNMSAIATTKNPVFQ 902
                   S EAEY+A + A+ + +W RRI++DL ++   PTTI+CD+ SAIA ++NPV  
Sbjct: 1057 -------SAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAISENPVSH 1109

Query: 903  SRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADMLTKAVSMDK 1037
             RTKHI ++YHYIR  V++++V+L+F  TNEQLAD+ TKA+S +K
Sbjct: 1110 DRTKHIAIKYHYIREAVDRQEVKLEFCRTNEQLADIFTKALSKEK 1154


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  381 bits (979), Expect = e-103
 Identities = 190/346 (54%), Positives = 251/346 (72%), Gaps = 1/346 (0%)
 Frame = +3

Query: 3    LKQAPRTWNSKIDGYFRQTGFSKSRSEPSLYIKKEG-NELLIVCLYVDDLIYTGTSMKIL 179
            LKQAPR W SKID +F+ +GF +S +EP+LY+KK+G +E L+VCLYVDD+IY G+S  ++
Sbjct: 968  LKQAPRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLYVDDMIYIGSSKSLV 1027

Query: 180  QDFKEAMMKEYEMTDLGLMKYFLGIQVQQSKGNISSLKKKYLEDLLKRFSMSNCKPISSP 359
             DFK  MM+ +EM+DLGL+KYFLG++V Q K  I   +KKY EDLLK+F M NC+  ++P
Sbjct: 1028 NDFKSNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQKKYAEDLLKKFQMMNCEVATTP 1087

Query: 360  AALNEKLQLNDGALKVDEKVYRSLVGSLLYLTHTRPDIMYTVSLLSRFLSEPSKLHLAAA 539
              +NEKLQ  DG  K + K++RSLVG L YLTHTRPDI ++VS++SRFL  P+K H  AA
Sbjct: 1088 MNINEKLQRADGTEKANPKLFRSLVGGLNYLTHTRPDIAFSVSVVSRFLQSPTKQHFGAA 1147

Query: 540  KRVLRYLQGTKNFGLKYVKEEVNSLISFTDSD*AGSLDDKKSTSGYAFCLGSKLIAWSSK 719
            KRVLRY+ GT +FG+ Y K     L+ FTDSD AG LDD+KSTSG  F  GS ++ WSSK
Sbjct: 1148 KRVLRYVAGTTDFGIWYSKAPNFRLVGFTDSDYAGCLDDRKSTSGSCFSFGSGVVTWSSK 1207

Query: 720  KQKIVALSSTEAEYIAVTDAICEGIWPRRILKDLQQEVKTPTTIFCDNMSAIATTKNPVF 899
            KQ+ VALS++EAEY A + A  + +W R++L+D   E K  T IF D+ SAIA  KNP F
Sbjct: 1208 KQETVALSTSEAEYTAASLAARQALWLRKLLEDFSYEQKESTEIFSDSKSAIAMAKNPSF 1267

Query: 900  QSRTKHIELRYHYIRHKVEKKKVELKFINTNEQLADMLTKAVSMDK 1037
              RTKHI+++YH+IR  V   ++ LKF +TNEQ AD+ TK++   K
Sbjct: 1268 HGRTKHIDVQYHFIRTLVADGRIVLKFCSTNEQAADIFTKSLPQAK 1313