BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005315
         (1433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36035.3| unnamed protein product [Vitis vinifera]              578   e-163
ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [...   578   e-163
ref|XP_002299746.1| predicted protein [Populus trichocarpa] gi|2...   577   e-162
ref|XP_003531642.1| PREDICTED: DNA repair protein RadA homolog [...   551   e-154
ref|XP_003627060.1| DNA repair protein radA-like protein [Medica...   545   e-152

>emb|CBI36035.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  578 bits (1491), Expect = e-163
 Identities = 298/412 (72%), Positives = 342/412 (83%)
 Frame = -2

Query: 1426 PQRLTDVNKGINQMTWRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQLA 1247
            P RLTDVN+GINQM WRIPL G F                          GKST LLQ+A
Sbjct: 171  PLRLTDVNRGINQMNWRIPLHGPFGYEVARVLGGGLVPGSLVLVGGDPGAGKSTLLLQIA 230

Query: 1246 AMIAEGSNSGRAGPAIYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQVLS 1067
            A+IAEG + G + P +YVSGEESVEQIGNRADRMRI TE+LFLYS+TDIEDIL ++ +LS
Sbjct: 231  AIIAEGHDIGGSSPVVYVSGEESVEQIGNRADRMRIDTEELFLYSSTDIEDILGQVHLLS 290

Query: 1066 PRVLIIDSIQTVYMKGVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIAGP 887
            PR L++DSIQTVY+KGV GS GGL QVKECTS+LLRFAKKTNIPV LIGHVTK+GDIAGP
Sbjct: 291  PRALVVDSIQTVYLKGVIGSAGGLSQVKECTSALLRFAKKTNIPVFLIGHVTKSGDIAGP 350

Query: 886  RVLEHIVDVVLYMEGEKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFLSE 707
            RVLEHIVDVVLYMEGEK+S+HR LRSVKNRFGSTDELGVFEM+Q GLQ VSNPS++FLSE
Sbjct: 351  RVLEHIVDVVLYMEGEKHSSHRLLRSVKNRFGSTDELGVFEMTQLGLQVVSNPSELFLSE 410

Query: 706  QHSDSAVLAGHAVAVIIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLIKQA 527
            Q+SDS +L G AVAVI+DGSRSFLLEIQALCLS S+VARQ NGV  +RA+MIIAVL+KQA
Sbjct: 411  QNSDSEILTGLAVAVIMDGSRSFLLEIQALCLSGSTVARQVNGVPASRADMIIAVLMKQA 470

Query: 526  GLKLQNNAIFVNVVSGVKLQETAGDLAIAAAVCSSFLDVPIPNDVAFIGEIGLAGELRPV 347
            GLKLQ+N IF+NVVSGV L ETAGDLA+AAA+CSSFL+ PIPN +AFIGEIGL GELR V
Sbjct: 471  GLKLQDNGIFLNVVSGVTLAETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRTV 530

Query: 346  PRMEKRVNALVKLGYKKCVVPQSTEKSLATLDLDGMMVLGCKNLKEVINIVF 191
            PRMEKRVN + KLGYKKC+VP++ EKSL TL+   + ++GC+N+KEVIN VF
Sbjct: 531  PRMEKRVNTVAKLGYKKCIVPKAAEKSLPTLEDMNIEIVGCRNMKEVINTVF 582


>ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [Vitis vinifera]
          Length = 624

 Score =  578 bits (1491), Expect = e-163
 Identities = 298/412 (72%), Positives = 342/412 (83%)
 Frame = -2

Query: 1426 PQRLTDVNKGINQMTWRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQLA 1247
            P RLTDVN+GINQM WRIPL G F                          GKST LLQ+A
Sbjct: 212  PLRLTDVNRGINQMNWRIPLHGPFGYEVARVLGGGLVPGSLVLVGGDPGAGKSTLLLQIA 271

Query: 1246 AMIAEGSNSGRAGPAIYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQVLS 1067
            A+IAEG + G + P +YVSGEESVEQIGNRADRMRI TE+LFLYS+TDIEDIL ++ +LS
Sbjct: 272  AIIAEGHDIGGSSPVVYVSGEESVEQIGNRADRMRIDTEELFLYSSTDIEDILGQVHLLS 331

Query: 1066 PRVLIIDSIQTVYMKGVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIAGP 887
            PR L++DSIQTVY+KGV GS GGL QVKECTS+LLRFAKKTNIPV LIGHVTK+GDIAGP
Sbjct: 332  PRALVVDSIQTVYLKGVIGSAGGLSQVKECTSALLRFAKKTNIPVFLIGHVTKSGDIAGP 391

Query: 886  RVLEHIVDVVLYMEGEKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFLSE 707
            RVLEHIVDVVLYMEGEK+S+HR LRSVKNRFGSTDELGVFEM+Q GLQ VSNPS++FLSE
Sbjct: 392  RVLEHIVDVVLYMEGEKHSSHRLLRSVKNRFGSTDELGVFEMTQLGLQVVSNPSELFLSE 451

Query: 706  QHSDSAVLAGHAVAVIIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLIKQA 527
            Q+SDS +L G AVAVI+DGSRSFLLEIQALCLS S+VARQ NGV  +RA+MIIAVL+KQA
Sbjct: 452  QNSDSEILTGLAVAVIMDGSRSFLLEIQALCLSGSTVARQVNGVPASRADMIIAVLMKQA 511

Query: 526  GLKLQNNAIFVNVVSGVKLQETAGDLAIAAAVCSSFLDVPIPNDVAFIGEIGLAGELRPV 347
            GLKLQ+N IF+NVVSGV L ETAGDLA+AAA+CSSFL+ PIPN +AFIGEIGL GELR V
Sbjct: 512  GLKLQDNGIFLNVVSGVTLAETAGDLAVAAAICSSFLEFPIPNGIAFIGEIGLGGELRTV 571

Query: 346  PRMEKRVNALVKLGYKKCVVPQSTEKSLATLDLDGMMVLGCKNLKEVINIVF 191
            PRMEKRVN + KLGYKKC+VP++ EKSL TL+   + ++GC+N+KEVIN VF
Sbjct: 572  PRMEKRVNTVAKLGYKKCIVPKAAEKSLPTLEDMNIEIVGCRNMKEVINTVF 623


>ref|XP_002299746.1| predicted protein [Populus trichocarpa] gi|222847004|gb|EEE84551.1|
            predicted protein [Populus trichocarpa]
          Length = 525

 Score =  577 bits (1488), Expect = e-162
 Identities = 298/412 (72%), Positives = 337/412 (81%)
 Frame = -2

Query: 1426 PQRLTDVNKGINQMTWRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQLA 1247
            P RLTDVN+G+N + WRIPL GLF                          GKST LLQ+A
Sbjct: 112  PLRLTDVNRGMNMLNWRIPLSGLFGSEVERVLGGGLVPGSLVLVGGDPGVGKSTLLLQVA 171

Query: 1246 AMIAEGSNSGRAGPAIYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQVLS 1067
            A+IA+  + G + P +YVSGEESVEQIGNRADRM IGTE+L+LYS+TDIEDIL KIQ LS
Sbjct: 172  AIIADSEDPGGSAPVVYVSGEESVEQIGNRADRMEIGTEELYLYSSTDIEDILGKIQHLS 231

Query: 1066 PRVLIIDSIQTVYMKGVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIAGP 887
            PR LIIDSIQTVY+KGV GS GGL QVKECTS+LLRFAK TNIP+LLIGHV K+GDIAGP
Sbjct: 232  PRALIIDSIQTVYLKGVAGSAGGLSQVKECTSALLRFAKTTNIPILLIGHVNKSGDIAGP 291

Query: 886  RVLEHIVDVVLYMEGEKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFLSE 707
            RVLEHIVDVVLYMEGEKYS+HR LR VKNRFGSTDELGVFEMSQ GL  VSNPS+IFL+E
Sbjct: 292  RVLEHIVDVVLYMEGEKYSSHRLLRPVKNRFGSTDELGVFEMSQLGLAVVSNPSEIFLTE 351

Query: 706  QHSDSAVLAGHAVAVIIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLIKQA 527
            QHSDS  LAG AVAVI+DGSRSFL+EIQALC+S SSV+R  NG+Q +RA+MII+VLIKQA
Sbjct: 352  QHSDSDFLAGLAVAVIMDGSRSFLIEIQALCVSGSSVSRHINGIQSSRADMIISVLIKQA 411

Query: 526  GLKLQNNAIFVNVVSGVKLQETAGDLAIAAAVCSSFLDVPIPNDVAFIGEIGLAGELRPV 347
            GL LQ NAIF+NVVSGV L ETAGD+AIAAA+CSSFL+ PIPN++AFIGEIGL GELR V
Sbjct: 412  GLMLQENAIFLNVVSGVMLTETAGDVAIAAAICSSFLEFPIPNNIAFIGEIGLGGELRAV 471

Query: 346  PRMEKRVNALVKLGYKKCVVPQSTEKSLATLDLDGMMVLGCKNLKEVINIVF 191
            PRMEKRV+ + KLGYK CV+P+S EKSLA L   GM ++GCKNLKEVIN VF
Sbjct: 472  PRMEKRVHTVAKLGYKMCVIPKSAEKSLANLGFQGMKIVGCKNLKEVINTVF 523


>ref|XP_003531642.1| PREDICTED: DNA repair protein RadA homolog [Glycine max]
          Length = 560

 Score =  551 bits (1420), Expect = e-154
 Identities = 285/419 (68%), Positives = 338/419 (80%)
 Frame = -2

Query: 1432 MLPQRLTDVNKGINQMTWRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQ 1253
            M P RLT+VNKG++   WRIPL G F                          GKST LLQ
Sbjct: 142  MRPLRLTEVNKGLDHHHWRIPLSGPFGDEVSRVFGGGLVPGSLTLIGGDPGVGKSTLLLQ 201

Query: 1252 LAAMIAEGSNSGRAGPAIYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQV 1073
            +AA+IA+G + G A P +YVSGEESVEQIGNRADR+RI + D++LYS+ D+EDIL+K+Q 
Sbjct: 202  IAAIIAKGDSDGEACPVVYVSGEESVEQIGNRADRLRIES-DIYLYSSNDVEDILKKVQY 260

Query: 1072 LSPRVLIIDSIQTVYMKGVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIA 893
            LSP  LI+DSIQTVY+KG+ GSPGG++QVKECTS+LLRFAKKTNIPVLLIGHVTK+GDIA
Sbjct: 261  LSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIA 320

Query: 892  GPRVLEHIVDVVLYMEGEKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFL 713
            GPRVLEHIVDVVLYMEGEKYS+HR LR+VKNRFGS DELGVFEMS  GLQAVSN S++FL
Sbjct: 321  GPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSADELGVFEMSHSGLQAVSNASEMFL 380

Query: 712  SEQHSDSAVLAGHAVAVIIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLIK 533
            SEQ  DS +LAG AVAVI+DGSR+FL+EIQALCLS S+ +RQ NG+Q  RA+MII+VLIK
Sbjct: 381  SEQLLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIQQKRADMIISVLIK 440

Query: 532  QAGLKLQNNAIFVNVVSGVKLQETAGDLAIAAAVCSSFLDVPIPNDVAFIGEIGLAGELR 353
            QAGL+LQ +A+F+NVVSG+ L ETAGDLAIAAA+CSS L++PIPND+AFIGEIGL GELR
Sbjct: 441  QAGLRLQEHAVFLNVVSGLALTETAGDLAIAAAICSSCLEIPIPNDIAFIGEIGLGGELR 500

Query: 352  PVPRMEKRVNALVKLGYKKCVVPQSTEKSLATLDLDGMMVLGCKNLKEVINIVFSG*MR 176
             VPRMEKRV  + KLGY+ C+VP+  EK+L T  L+ M V+GC+NLKEVIN VF   MR
Sbjct: 501  MVPRMEKRVYTVAKLGYRMCIVPKVAEKALGTEGLEKMEVVGCRNLKEVINTVFLNIMR 559


>ref|XP_003627060.1| DNA repair protein radA-like protein [Medicago truncatula]
            gi|355521082|gb|AET01536.1| DNA repair protein radA-like
            protein [Medicago truncatula]
          Length = 643

 Score =  545 bits (1404), Expect = e-152
 Identities = 280/441 (63%), Positives = 347/441 (78%)
 Frame = -2

Query: 1426 PQRLTDVNKGINQMTWRIPLDGLFXXXXXXXXXXXXXXXXXXXXXXXXXXGKSTFLLQLA 1247
            P RL++VN+G++ + WRI L G F                          GKST LLQ+A
Sbjct: 143  PLRLSEVNRGVDHLHWRIRLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQVA 202

Query: 1246 AMIAEGSNSGRAGPAIYVSGEESVEQIGNRADRMRIGTEDLFLYSNTDIEDILEKIQVLS 1067
            AM+AEG     A P +YVSGEESVEQIGNRADR+ IG+ D++LYS+ DIEDIL+K+Q +S
Sbjct: 203  AMLAEGDEDVGASPVVYVSGEESVEQIGNRADRLTIGS-DIYLYSSNDIEDILKKVQYIS 261

Query: 1066 PRVLIIDSIQTVYMKGVTGSPGGLVQVKECTSSLLRFAKKTNIPVLLIGHVTKTGDIAGP 887
            PR L++DS+QTVY+KG+ GSPGG++QVKECTS+LLRFAK TNIPVLLIGHVTK+GDIAGP
Sbjct: 262  PRALVVDSVQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGP 321

Query: 886  RVLEHIVDVVLYMEGEKYSAHRFLRSVKNRFGSTDELGVFEMSQEGLQAVSNPSDIFLSE 707
            RVLEHIVDVVLYMEGEKY++HR LR+VKNRFGSTDELGVFEMS  GLQAVSN S++FLSE
Sbjct: 322  RVLEHIVDVVLYMEGEKYTSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSE 381

Query: 706  QHSDSAVLAGHAVAVIIDGSRSFLLEIQALCLSDSSVARQFNGVQHNRAEMIIAVLIKQA 527
            Q  DS VLAG AVAVI+DGSR+FL+EIQALCLS S+ +RQFNG+Q NRA+MII+VLIKQA
Sbjct: 382  QDLDSDVLAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQFNGIQANRADMIISVLIKQA 441

Query: 526  GLKLQNNAIFVNVVSGVKLQETAGDLAIAAAVCSSFLDVPIPNDVAFIGEIGLAGELRPV 347
            GL+LQ +A+F+NVVSG+ + ETAGDLAIAAA+CSS L++PIPND+AFIGEIGL GELR V
Sbjct: 442  GLRLQEHAVFLNVVSGLTVTETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRMV 501

Query: 346  PRMEKRVNALVKLGYKKCVVPQSTEKSLATLDLDGMMVLGCKNLKEVINIVFSG*MRCSK 167
             RMEKRV+ + KLGY+ C++P++ EK L T  L+ + V+GC+NLK+VIN +F   MR  K
Sbjct: 502  TRMEKRVHTVAKLGYRMCIIPKAAEKVLGTEGLENIKVVGCRNLKDVINTIFPNVMR-RK 560

Query: 166  LCHFSLC*S*NAFVTCIYEKN 104
            + H +     ++   C+   N
Sbjct: 561  ILHSNQIVGPDSNSCCVIHNN 581