BLASTX nr result
ID: Coptis24_contig00005272
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005272
(325 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera] 102 2e-36
ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containi... 101 2e-36
ref|XP_002532248.1| pentatricopeptide repeat-containing protein,... 100 4e-36
ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containi... 105 1e-34
ref|XP_002301082.1| predicted protein [Populus trichocarpa] gi|2... 102 2e-33
>emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 102 bits (253), Expect(2) = 2e-36
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 YPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRA 178
YPNLITYSTL+ GLC +GRL+EAI++FEEMVSKD+ILPD LTYN LINGFC G KVDRA
Sbjct: 276 YPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRA 334
Score = 75.9 bits (185), Expect(2) = 2e-36
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +1
Query: 181 KIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMR 306
KIM+FM+KN C PN+FNYS+LMNG+CKE R EEAKEVFDEM+
Sbjct: 336 KIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 377
Score = 65.1 bits (157), Expect(2) = 2e-12
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +2
Query: 5 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRA 178
PN+ YS LM G C GRL+EA +VF+EM S + PDT+ Y LIN FCR G+VD A
Sbjct: 348 PNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLG-LKPDTVGYTTLINFFCRAGRVDEA 404
Score = 32.0 bits (71), Expect(2) = 2e-12
Identities = 10/41 (24%), Positives = 26/41 (63%)
Frame = +1
Query: 181 KIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEM 303
+++ M +N+C+ + ++ ++ G C+E R+EEA + + +
Sbjct: 406 ELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERL 446
>ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 101 bits (252), Expect(2) = 2e-36
Identities = 47/59 (79%), Positives = 53/59 (89%)
Frame = +2
Query: 2 YPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRA 178
YPNLITYSTL+ GLC +GRL+EAI++FEEMVSKD+ILPD LTYN LINGFC G KVDRA
Sbjct: 233 YPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRA 291
Score = 75.9 bits (185), Expect(2) = 2e-36
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +1
Query: 181 KIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMR 306
KIM+FM+KN C PN+FNYS+LMNG+CKE R EEAKEVFDEM+
Sbjct: 293 KIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 334
Score = 65.1 bits (157), Expect(2) = 2e-13
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +2
Query: 5 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRA 178
PN+ YS LM G C GRL+EA +VF+EM S + PDT+ Y LIN FCR G+VD A
Sbjct: 305 PNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLG-LKPDTVGYTTLINFFCRAGRVDEA 361
Score = 35.4 bits (80), Expect(2) = 2e-13
Identities = 11/41 (26%), Positives = 28/41 (68%)
Frame = +1
Query: 181 KIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEM 303
+++ MR+N+C+ + ++ ++ G C+E R+EEA+ + + +
Sbjct: 363 ELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERL 403
>ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528066|gb|EEF30142.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 521
Score = 100 bits (249), Expect(2) = 4e-36
Identities = 45/61 (73%), Positives = 54/61 (88%)
Frame = +2
Query: 2 YPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRAR 181
YPN+ITYSTL+ GLC GRL+EAI++FEEMVSKD+ILPD LTY++LI GFC GGK DRAR
Sbjct: 232 YPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRAR 291
Query: 182 R 184
+
Sbjct: 292 K 292
Score = 76.3 bits (186), Expect(2) = 4e-36
Identities = 34/47 (72%), Positives = 39/47 (82%)
Frame = +1
Query: 181 KIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMRRSRLE 321
KIM+FMR N C PN+FNYS LMNG+CKE R EEAKEVFDEM+ S L+
Sbjct: 292 KIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLK 338
Score = 61.6 bits (148), Expect = 6e-08
Identities = 30/58 (51%), Positives = 38/58 (65%)
Frame = +2
Query: 5 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRA 178
PN+ YS LM G C GRL+EA +VF+EM S + PDT+ Y LIN FC G++D A
Sbjct: 304 PNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSG-LKPDTVGYTTLINCFCGVGRIDEA 360
>ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 105 bits (261), Expect(2) = 1e-34
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = +2
Query: 2 YPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRAR 181
YPNL+TYSTL+GGLC+ G+L+EAI+ FEEMVSKD ILPD LTYNILINGFC+ GKVDRAR
Sbjct: 223 YPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRAR 282
Score = 66.6 bits (161), Expect(2) = 1e-34
Identities = 27/41 (65%), Positives = 35/41 (85%)
Frame = +1
Query: 184 IMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMR 306
I++FM+ N C PN+FNYS LMNGYCKE R +EAKEVF+E++
Sbjct: 284 ILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIK 324
Score = 61.6 bits (148), Expect(2) = 7e-11
Identities = 31/58 (53%), Positives = 38/58 (65%)
Frame = +2
Query: 5 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRA 178
PN+ YS LM G C GRLQEA +VF E+ S + PDT++Y LIN CR G+VD A
Sbjct: 295 PNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLG-MKPDTISYTTLINCLCRTGRVDEA 351
Score = 30.0 bits (66), Expect(2) = 7e-11
Identities = 8/41 (19%), Positives = 26/41 (63%)
Frame = +1
Query: 181 KIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEM 303
+++ M+ +C+ + ++ ++ G C+E R++EA ++ ++
Sbjct: 353 ELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKL 393
Score = 55.1 bits (131), Expect = 6e-06
Identities = 24/58 (41%), Positives = 39/58 (67%)
Frame = +2
Query: 5 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRA 178
P+ I+Y+TL+ LC GR+ EA ++ ++M KD DT+T+N+++ G CR G+ D A
Sbjct: 330 PDTISYTTLINCLCRTGRVDEATELLQQMKDKD-CRADTVTFNVMLGGLCREGRFDEA 386
>ref|XP_002301082.1| predicted protein [Populus trichocarpa] gi|222842808|gb|EEE80355.1|
predicted protein [Populus trichocarpa]
Length = 509
Score = 102 bits (253), Expect(2) = 2e-33
Identities = 47/61 (77%), Positives = 56/61 (91%)
Frame = +2
Query: 2 YPNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRAR 181
YPNLITYSTLM GLC++GRL+EAI++FEEMVSKD+ILPD LTYN+LINGF GKVDRA+
Sbjct: 223 YPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAK 282
Query: 182 R 184
+
Sbjct: 283 K 283
Score = 65.5 bits (158), Expect(2) = 2e-33
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = +1
Query: 181 KIMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEAKEVFDEMR 306
KIM+FM+ N C PN+FNYS+LM+G+CKE R EEA + F+EM+
Sbjct: 283 KIMEFMKSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMK 324
Score = 60.1 bits (144), Expect(2) = 2e-10
Identities = 30/58 (51%), Positives = 37/58 (63%)
Frame = +2
Query: 5 PNLITYSTLMGGLCDAGRLQEAIQVFEEMVSKDEILPDTLTYNILINGFCRGGKVDRA 178
PN+ YS LM G C GRL+EA+ FEEM + DT+ Y ILIN FCR G++D A
Sbjct: 295 PNVFNYSALMSGFCKEGRLEEAMDAFEEM-KIFGLKQDTVGYTILINYFCRFGRIDEA 351
Score = 30.0 bits (66), Expect(2) = 2e-10
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 184 IMDFMRKNECQPNIFNYSSLMNGYCKEDRYEEA 282
+++ M++ +C+ +I + L+ G+C E R EEA
Sbjct: 354 LLEEMKETKCKADIVTVNVLLRGFCGEGRTEEA 386