BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005230
         (777 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276795.1| PREDICTED: protein TIC 20-II, chloroplastic ...   244   2e-62
ref|XP_002328962.1| predicted protein [Populus trichocarpa] gi|1...   226   6e-57
ref|XP_004139099.1| PREDICTED: protein TIC 20-II, chloroplastic-...   216   6e-54
ref|NP_566112.1| uncharacterized protein [Arabidopsis thaliana] ...   197   2e-48
ref|XP_002882135.1| hypothetical protein ARALYDRAFT_483969 [Arab...   197   3e-48

>ref|XP_002276795.1| PREDICTED: protein TIC 20-II, chloroplastic [Vitis vinifera]
           gi|147792791|emb|CAN71033.1| hypothetical protein
           VITISV_000355 [Vitis vinifera]
          Length = 218

 Score =  244 bits (622), Expect = 2e-62
 Identities = 135/219 (61%), Positives = 159/219 (72%), Gaps = 10/219 (4%)
 Frame = -2

Query: 764 MAATTLLRFSL--QPSPQTLKSPFLSHTPV------PHYNFPTPRISPIKLS-NSKPIIV 612
           MA+  LLR SL  Q   + L  P+ + +        PH   PT +ISP  L   S+P I 
Sbjct: 1   MASIPLLRLSLHRQTPLKPLHQPYSAASITAQLPNFPHPLKPTLQISPRPLRPRSRPSIT 60

Query: 611 MSSYQPVPATERLISACAYFLPFFNGLQYGRYLFMKYPSLGLLIEPIFPLLKAYRSVPYA 432
           MS Y  VPATERLISA AY LPFFNGLQYGR+L M+YP+LGL++EPI P+L  YRS+PYA
Sbjct: 61  MS-YSAVPATERLISAAAYCLPFFNGLQYGRFLLMQYPALGLVLEPILPILSLYRSIPYA 119

Query: 431 SFVAFFALYLGVVRNPSFSKYVRFNSMQXXXXXXXXXXXXLFQRIFSPGK-GLGLQLLVM 255
           SFVAFFALYLGVVRNPSFS++VRFNSMQ            L  RIF+PG+ G+G +L+VM
Sbjct: 120 SFVAFFALYLGVVRNPSFSRFVRFNSMQAVVLDVLLVVPLLVNRIFNPGRAGVGFRLMVM 179

Query: 254 GYNGIFVFIVFCFLYSLGFCVLGRTPYLPFVADAADRQL 138
           G+N IFVF+V CFLYSLGFC+LGRTPYLPFVADAA RQL
Sbjct: 180 GHNAIFVFVVACFLYSLGFCILGRTPYLPFVADAAGRQL 218


>ref|XP_002328962.1| predicted protein [Populus trichocarpa] gi|118482664|gb|ABK93251.1|
           unknown [Populus trichocarpa]
           gi|222839196|gb|EEE77547.1| predicted protein [Populus
           trichocarpa]
          Length = 209

 Score =  226 bits (575), Expect = 6e-57
 Identities = 119/214 (55%), Positives = 146/214 (68%), Gaps = 5/214 (2%)
 Frame = -2

Query: 764 MAATTLLRFSLQPSPQTLKS--PFLSHTP--VPHYNFPTPRISPIKLSNSKPIIVMSSYQ 597
           MA+ +LLR SL P+P+TL    PF S  P   P   FP     P    + K  +   SY 
Sbjct: 1   MASISLLRLSLIPTPKTLSKSHPFSSFNPPLTPFLKFP-----PKTRLSQKSTVTRMSYN 55

Query: 596 PVPATERLISACAYFLPFFNGLQYGRYLFMKYPSLGLLIEPIFPLLKAYRSVPYASFVAF 417
           P PAT+RL+SA +Y LPFFN LQYGR+LF  YPSL LL++P+ PLL  YRS+PYASFVAF
Sbjct: 56  PTPATDRLVSAVSYTLPFFNSLQYGRFLFTTYPSLALLVDPLIPLLSLYRSIPYASFVAF 115

Query: 416 FALYLGVVRNPSFSKYVRFNSMQXXXXXXXXXXXXLFQRIFSPGK-GLGLQLLVMGYNGI 240
           FALYLGVVRNPSFS+YVRFN+MQ            L  RI SPG+ GLG +L+V G+N +
Sbjct: 116 FALYLGVVRNPSFSQYVRFNAMQAVTLDVLLVVPLLLTRILSPGRAGLGFKLMVWGHNAL 175

Query: 239 FVFIVFCFLYSLGFCVLGRTPYLPFVADAADRQL 138
           F+F  FCF+Y L   VLG+TPYLPF+A+AA RQ+
Sbjct: 176 FLFSCFCFVYGLASSVLGKTPYLPFIAEAAGRQV 209


>ref|XP_004139099.1| PREDICTED: protein TIC 20-II, chloroplastic-like [Cucumis sativus]
           gi|449485336|ref|XP_004157137.1| PREDICTED: protein TIC
           20-II, chloroplastic-like [Cucumis sativus]
          Length = 208

 Score =  216 bits (549), Expect = 6e-54
 Identities = 112/213 (52%), Positives = 145/213 (68%), Gaps = 1/213 (0%)
 Frame = -2

Query: 773 LKKMAATTLLRFSLQPSPQTLKSPFLSHTPVPHYNFPTPRISPIKLSNSKPIIVMSSYQP 594
           L  ++A T +R +L P    +KS    H+ +P     +P+ +PI++S          Y P
Sbjct: 8   LLNLSAKTSIRAALFPHSSAIKSRH--HSSLPFLPSKSPKFTPIRMS----------YNP 55

Query: 593 VPATERLISACAYFLPFFNGLQYGRYLFMKYPSLGLLIEPIFPLLKAYRSVPYASFVAFF 414
            PAT+RLISA AY LPFFN LQYGR+LF +YP+LG   EP+ P+L  YRS+P++SFVAFF
Sbjct: 56  TPATDRLISAVAYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFF 115

Query: 413 ALYLGVVRNPSFSKYVRFNSMQXXXXXXXXXXXXLFQRIFSPGK-GLGLQLLVMGYNGIF 237
           ALYLGVVRNPSF+ YVRFNSMQ            L QRI SPG+ G+G +++V  +NG+F
Sbjct: 116 ALYLGVVRNPSFNHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRSGIGFKIMVWSHNGLF 175

Query: 236 VFIVFCFLYSLGFCVLGRTPYLPFVADAADRQL 138
           VF V CFLYS+  C+LGRTP+LP VADAA RQ+
Sbjct: 176 VFSVLCFLYSVVSCLLGRTPHLPIVADAAGRQI 208


>ref|NP_566112.1| uncharacterized protein [Arabidopsis thaliana]
           gi|75100577|sp|O82251.1|TI202_ARATH RecName:
           Full=Protein TIC 20-II, chloroplastic; AltName:
           Full=Translocon at the inner envelope membrane of
           chloroplasts 20-II; Short=AtTIC20-II; Flags: Precursor
           gi|3738296|gb|AAC63638.1| expressed protein [Arabidopsis
           thaliana] gi|330255801|gb|AEC10895.1| uncharacterized
           protein [Arabidopsis thaliana]
          Length = 208

 Score =  197 bits (501), Expect = 2e-48
 Identities = 105/199 (52%), Positives = 132/199 (66%), Gaps = 5/199 (2%)
 Frame = -2

Query: 719 QTLKSPFLSHTPVP-HYNFPTPRISPIKLSNSKP--IIVMSSYQPVPATERLISACAYFL 549
           QTL +P  +    P   +FP      I+ S+ +   +   +SY P PATER+IS  +Y L
Sbjct: 10  QTLTNPLSAPRCRPLSLSFPGSSTFSIRPSSRRATALTTRASYTPTPATERVISIASYAL 69

Query: 548 PFFNGLQYGRYLFMKYPSLGLLIEPIFPLLKAYRSVPYASFVAFFALYLGVVRNPSFSKY 369
           PFFN LQYGR+LF +YP LGLL EPIFP+L  YRSVPYASFVAFF LYLGVVRN SFS+Y
Sbjct: 70  PFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFFGLYLGVVRNTSFSRY 129

Query: 368 VRFNSMQXXXXXXXXXXXXLFQRIFSPGK--GLGLQLLVMGYNGIFVFIVFCFLYSLGFC 195
           VRFN+MQ            L  RI  PG+  G G++ ++ G+ G+FVF   CF+Y +   
Sbjct: 130 VRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFVFSFMCFVYGVVSS 189

Query: 194 VLGRTPYLPFVADAADRQL 138
           +LG+TPY+PFVADAA RQL
Sbjct: 190 LLGKTPYIPFVADAAGRQL 208


>ref|XP_002882135.1| hypothetical protein ARALYDRAFT_483969 [Arabidopsis lyrata subsp.
           lyrata] gi|297327974|gb|EFH58394.1| hypothetical protein
           ARALYDRAFT_483969 [Arabidopsis lyrata subsp. lyrata]
          Length = 209

 Score =  197 bits (500), Expect = 3e-48
 Identities = 96/163 (58%), Positives = 117/163 (71%), Gaps = 2/163 (1%)
 Frame = -2

Query: 620 IIVMSSYQPVPATERLISACAYFLPFFNGLQYGRYLFMKYPSLGLLIEPIFPLLKAYRSV 441
           +   +SY P PATER+IS  +Y LPFFN LQYGR+LF +YP LGLL EPIFP+L  YRSV
Sbjct: 47  VTTRASYTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSV 106

Query: 440 PYASFVAFFALYLGVVRNPSFSKYVRFNSMQXXXXXXXXXXXXLFQRIFSPGK--GLGLQ 267
           PYASFVAFF LYLGVVRN S S+YVRFN+MQ            L  RI  PG+  G G++
Sbjct: 107 PYASFVAFFGLYLGVVRNTSLSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMK 166

Query: 266 LLVMGYNGIFVFIVFCFLYSLGFCVLGRTPYLPFVADAADRQL 138
            ++ G+ G+FVF   CF+Y +  C+LG+TPY+PFVADAA RQL
Sbjct: 167 AMMWGHTGVFVFSSMCFVYGVVSCLLGKTPYIPFVADAAGRQL 209