BLASTX nr result
ID: Coptis24_contig00005227
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00005227 (1134 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, ... 434 e-119 ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, ... 431 e-118 ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Po... 430 e-118 gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides] 429 e-118 ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, ... 429 e-118 >ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis vinifera] gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera] Length = 259 Score = 434 bits (1117), Expect = e-119 Identities = 209/261 (80%), Positives = 221/261 (84%), Gaps = 1/261 (0%) Frame = +3 Query: 93 MALSIASTAVANLPLRE-SRQHVGRACIRVCARLRRTNVQATKGVSSVCVPLPPDRPLWF 269 MALSIASTA ++LP RE S +H R R + ATKGVSSVC PLPPDRPLWF Sbjct: 1 MALSIASTAFSSLPTREVSSKHFPRKLTTWLPG--RVRLNATKGVSSVCEPLPPDRPLWF 58 Query: 270 PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLES 449 PGSSPPEWLDGSLPGDFGFDPLGLGSDPE LRWFAQAEL+H RWAMLAVAGILIPE LE Sbjct: 59 PGSSPPEWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLER 118 Query: 450 LGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRKN 629 LGFIENFSWY+AG E++ D TTLFVVQL LMGW EGRRWADL+NPGCVDI L PN+ Sbjct: 119 LGFIENFSWYDAGAQEFFADPTTLFVVQLALMGWVEGRRWADLINPGCVDIQLTFPNKAK 178 Query: 630 PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 809 P PDVGYPGG WFDP MWGRGSPEPVMVLRTKEIKNGRLAMLAF+GF FQAIYTGE PIE Sbjct: 179 PKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAIYTGEGPIE 238 Query: 810 NLMAHIADPGHCNIFSAFTSQ 872 NLMAHIADPGHCN+FSAFTSQ Sbjct: 239 NLMAHIADPGHCNVFSAFTSQ 259 >ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like [Glycine max] Length = 260 Score = 431 bits (1109), Expect = e-118 Identities = 203/259 (78%), Positives = 224/259 (86%), Gaps = 1/259 (0%) Frame = +3 Query: 93 MALSIASTAVANLPLRESRQHVGRACIRVCARL-RRTNVQATKGVSSVCVPLPPDRPLWF 269 MAL+++STA+++LP RE RQ C L RRT ATKGVS+VC PLPPDRPLWF Sbjct: 1 MALALSSTALSSLPNREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWF 60 Query: 270 PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLES 449 PGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+H RWAMLAV GIL+PE LE Sbjct: 61 PGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILVPELLER 120 Query: 450 LGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRKN 629 +G+IENFSWY+AGT EY+ D TTLFVVQ+ LMGW EGRRWAD+VNPG VDI+ K+P+ N Sbjct: 121 IGYIENFSWYDAGTREYFVDPTTLFVVQMGLMGWVEGRRWADIVNPGSVDIEPKVPHVTN 180 Query: 630 PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 809 P PDVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GFWFQAIYTGE PIE Sbjct: 181 PKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIE 240 Query: 810 NLMAHIADPGHCNIFSAFT 866 NLMAH+ADPGHCNIFSAFT Sbjct: 241 NLMAHLADPGHCNIFSAFT 259 >ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa] gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa] Length = 261 Score = 430 bits (1105), Expect = e-118 Identities = 199/261 (76%), Positives = 223/261 (85%), Gaps = 2/261 (0%) Frame = +3 Query: 93 MALSIASTAVANLPLR--ESRQHVGRACIRVCARLRRTNVQATKGVSSVCVPLPPDRPLW 266 MAL+ AS+++++LP R + Q I C ++ V ATKGVSSVC PLPPDRPLW Sbjct: 1 MALNFASSSLSSLPTRTRDKPQKSLLGKIEKCQAVK-VRVNATKGVSSVCEPLPPDRPLW 59 Query: 267 FPGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLE 446 FPGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+HGRWAMLA AGILIPEWLE Sbjct: 60 FPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWLE 119 Query: 447 SLGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRK 626 LGFI+NF+W++AGT EY+ D TTLFVVQL+LMGW EGRRWAD++ PGCVDID KLP++ Sbjct: 120 RLGFIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLPHKT 179 Query: 627 NPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPI 806 P PDVGYPGG WFDP WGRGSPEPVM +RTKEIKNGRLAMLAF+GFWFQAIYTGE PI Sbjct: 180 KPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAIYTGEGPI 239 Query: 807 ENLMAHIADPGHCNIFSAFTS 869 +NLMAHIADPGHCNIFSAFTS Sbjct: 240 DNLMAHIADPGHCNIFSAFTS 260 >gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides] Length = 261 Score = 429 bits (1104), Expect = e-118 Identities = 198/261 (75%), Positives = 223/261 (85%), Gaps = 2/261 (0%) Frame = +3 Query: 93 MALSIASTAVANLPLR--ESRQHVGRACIRVCARLRRTNVQATKGVSSVCVPLPPDRPLW 266 MAL+ AS+++++LP R + Q I C ++ V ATKGVSSVC PLPPDRPLW Sbjct: 1 MALNFASSSLSSLPTRTRDKPQKSLLGKIEKCQAVK-VRVNATKGVSSVCEPLPPDRPLW 59 Query: 267 FPGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLE 446 FPGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+HGRWAMLA AGILIPEWLE Sbjct: 60 FPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWLE 119 Query: 447 SLGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRK 626 LGFI+NF+W++AGT EY+ D TTLFVVQL+LMGW EGRRWAD++ PGCVDID KLP++ Sbjct: 120 RLGFIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLPHKT 179 Query: 627 NPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPI 806 P PD+GYPGG WFDP WGRGSPEPVM +RTKEIKNGRLAMLAF+GFWFQAIYTGE PI Sbjct: 180 KPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAMLAFVGFWFQAIYTGEGPI 239 Query: 807 ENLMAHIADPGHCNIFSAFTS 869 +NLMAHIADPGHCNIFSAFTS Sbjct: 240 DNLMAHIADPGHCNIFSAFTS 260 >ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like [Glycine max] Length = 260 Score = 429 bits (1103), Expect = e-118 Identities = 202/259 (77%), Positives = 223/259 (86%), Gaps = 1/259 (0%) Frame = +3 Query: 93 MALSIASTAVANLPLRESRQHVGRACIRVCARL-RRTNVQATKGVSSVCVPLPPDRPLWF 269 MAL+++STA+++LP RE RQ C L RRT ATKGVS+VC PLPPDRPLWF Sbjct: 1 MALALSSTALSSLPNREIRQKGFPDRTPTCLSLTRRTVAYATKGVSAVCEPLPPDRPLWF 60 Query: 270 PGSSPPEWLDGSLPGDFGFDPLGLGSDPEQLRWFAQAELVHGRWAMLAVAGILIPEWLES 449 PGSSPPEWLDGSLPGDFGFDPLGLGSDPE L+WFAQAEL+H RWAMLAV GIL+PE LE Sbjct: 61 PGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILVPELLEK 120 Query: 450 LGFIENFSWYEAGTLEYYTDTTTLFVVQLVLMGWAEGRRWADLVNPGCVDIDLKLPNRKN 629 +G+IENFSWY+AG EY+ D TTLFVVQ+ LMGW EGRRWAD+VNPG VDI+ K+P+ N Sbjct: 121 IGYIENFSWYDAGAREYFVDPTTLFVVQMGLMGWVEGRRWADMVNPGSVDIEPKVPHITN 180 Query: 630 PTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFMGFWFQAIYTGERPIE 809 P PDVGYPGG WFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAF+GFWFQAIYTGE PIE Sbjct: 181 PKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAIYTGEGPIE 240 Query: 810 NLMAHIADPGHCNIFSAFT 866 NLMAH+ADPGHCNIFSAFT Sbjct: 241 NLMAHLADPGHCNIFSAFT 259