BLASTX nr result
ID: Coptis24_contig00005222
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005222
(1905 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containin... 353 9e-95
ref|XP_003525622.1| PREDICTED: zinc finger CCCH domain-containin... 349 1e-93
ref|XP_003522417.1| PREDICTED: zinc finger CCCH domain-containin... 346 1e-92
ref|XP_003549835.1| PREDICTED: zinc finger CCCH domain-containin... 343 7e-92
ref|XP_003634306.1| PREDICTED: zinc finger CCCH domain-containin... 338 2e-90
>ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1
[Vitis vinifera] gi|297733636|emb|CBI14883.3| unnamed
protein product [Vitis vinifera]
Length = 484
Score = 353 bits (906), Expect = 9e-95
Identities = 181/368 (49%), Positives = 229/368 (62%), Gaps = 9/368 (2%)
Frame = -1
Query: 1440 YPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKNPKVLKASLSGDSDESQQXXXX 1261
YP+RP+ DC FY+RT +C FGSNCKFNHP+ KV + + +E +
Sbjct: 126 YPVRPDAVDCSFYLRTGTCKFGSNCKFNHPIRRKNQVAKEKVKEK----EKEEFPERP-- 179
Query: 1260 XXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREKSVVGPPAEFNFLGLPIRPGERECP 1081
GQ ECKYYLR+GGCKFGKACRY H + K P E NFLGLPIR GE+ECP
Sbjct: 180 --------GQTECKYYLRTGGCKFGKACRYNHTKAKPSAVPVLELNFLGLPIRMGEKECP 231
Query: 1080 FYMRTGSCKFASNCRFNHPDPTAGGADSGDNGTSSG---PLYSSIDSQPAVASWSLPRPS 910
+YMRTGSCK+ +NCRFNHPDPTA G +G +G PL + SQ +ASWS PR
Sbjct: 232 YYMRTGSCKYGANCRFNHPDPTAAGGYESPSGYGNGGSVPLQGA--SQSNMASWSSPRAL 289
Query: 909 ADTVPYSETSRSYVPVMMAP-QGAHSGH-EWNGYQAPLSPLYPLEGTLRPAVASSMNGSI 736
+ P +VP+M +P QG + EWNGYQAPL P P E ++ P A +N +
Sbjct: 290 NEPAP-------FVPIMFSPTQGVPPPNPEWNGYQAPLYPPPPPERSMHPPPAFVINNTA 342
Query: 735 KPTNVYLPHLQQMP--VDEFPERPGQQECQYYVKTGDCKFKSSCRYHHPKARVSKSP--N 568
NVY H QQ +++FPERPGQ EC Y++KTGDCKF+++C+YHHPK R+ KSP
Sbjct: 343 TDANVYGHHQQQQQSLIEDFPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCT 402
Query: 567 LSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVSTAAPPQYIMPSAT 388
LS GLPLRPDQ +C+H++RYGICK+G ACK+DH N+G+S S + + Q P
Sbjct: 403 LSDKGLPLRPDQNICTHYNRYGICKFGPACKFDHPVNYGNSASAPSAESGQDQ---PPPF 459
Query: 387 SGGAEASG 364
G A G
Sbjct: 460 GGSVTADG 467
Score = 70.5 bits (171), Expect = 2e-09
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Frame = -1
Query: 687 EFPERPGQQECQYYVKTGDCKFKSSCRYHHPKARVS-----KSPNLSPLGLPLRPDQLVC 523
++P RP +C +Y++TG CKF S+C+++HP R + K P RP Q C
Sbjct: 125 QYPVRPDAVDCSFYLRTGTCKFGSNCKFNHPIRRKNQVAKEKVKEKEKEEFPERPGQTEC 184
Query: 522 SHFSRYGICKYGAACKYDHS 463
++ R G CK+G AC+Y+H+
Sbjct: 185 KYYLRTGGCKFGKACRYNHT 204
>ref|XP_003525622.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
[Glycine max]
Length = 490
Score = 349 bits (896), Expect = 1e-93
Identities = 182/370 (49%), Positives = 231/370 (62%), Gaps = 9/370 (2%)
Frame = -1
Query: 1446 YFYPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKNPKVLKASLSGDSDESQQXX 1267
+ YPLRPE DC FY++T +C FG NCKFNHP+ + K +G+ +E+ +
Sbjct: 138 HHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIKRKSQAVKEK------AGEREETTERS 191
Query: 1266 XXXXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREK--SVVGPPAEFNFLGLPIRPGE 1093
G ECKYY RSGGCKFGK+C+Y H R K + P E NFLGLPIRPGE
Sbjct: 192 ----------GMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRPGE 241
Query: 1092 RECPFYMRTGSCKFASNCRFNHPDPTAGGADSGDNGT---SSGPLYSSIDSQPAVASWSL 922
RECP+YMRTGSCKF +NC+FNHPDPTA G G+ + + G + SQ +V SWS
Sbjct: 242 RECPYYMRTGSCKFGANCKFNHPDPTAVGGGGGNPPSGYGNGGSISLQGVSQTSVPSWSS 301
Query: 921 PRPSADTVPYSETSRSYVPVMMAP-QGAHS-GHEWNGYQAPLSPLYPLEGTLRPAVASSM 748
PR + P+ VP+M++P QG + +WNGYQA + Y E ++ P M
Sbjct: 302 PRTLNEASPF-------VPMMLSPTQGVSTQSSDWNGYQASV---YLPERSIHPPSTFVM 351
Query: 747 NGSIKPTNVYLPHLQQMPVDEFPERPGQQECQYYVKTGDCKFKSSCRYHHPKARVSKSP- 571
N TNVY+ H +QMPVDEFPERPG+ EC +++KTGDCKFKS+C++HHPK RV++ P
Sbjct: 352 NNPAIDTNVYMHHQKQMPVDEFPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRVTRLPP 411
Query: 570 -NLSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVSTAAPPQYIMPS 394
NLS GLPLRPDQ VCSH+SRYGICK+G ACK+DH N PV+ Q S
Sbjct: 412 CNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINL----QPVMIPGLEQQSYSNS 467
Query: 393 ATSGGAEASG 364
A++G A G
Sbjct: 468 ASAGVAGIGG 477
>ref|XP_003522417.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
[Glycine max]
Length = 570
Score = 346 bits (887), Expect = 1e-92
Identities = 181/368 (49%), Positives = 229/368 (62%), Gaps = 12/368 (3%)
Frame = -1
Query: 1440 YPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKNPKVLKASLSGDSDESQQXXXX 1261
YPLRPE DC FY++T +C FG NCKFNHPL +K +G+ +E +
Sbjct: 230 YPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNQAKKEN------AGEREEQAERS-- 281
Query: 1260 XXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREKSVVGPPAEFNFLGLPIRPGERECP 1081
GQ+ECKYYLRSGGCKFGKAC++ H R KS E NFLGLPIR GE+EC
Sbjct: 282 --------GQMECKYYLRSGGCKFGKACKFNHTRGKSSSASATELNFLGLPIRVGEKECL 333
Query: 1080 FYMRTGSCKFASNCRFNHPDPTAGGADSGDNGTSSGPLYSSID----SQPAVASWSLPRP 913
+YMRTGSCKF +NCRFNHPDPT G +G +G SSI SQ +++SWS RP
Sbjct: 334 YYMRTGSCKFGANCRFNHPDPTTVGGGDSPSGYGNG---SSISLQGVSQSSISSWSSTRP 390
Query: 912 SADTVPYSETSRSYVPVMMAPQGAHS--GHEWNGYQAPLSPLYPLEGTLRPAVASSMNGS 739
++ P +VPV+++P S EWNGYQA P+Y E +L P MN
Sbjct: 391 LNESAP-------FVPVILSPNPGVSPQSSEWNGYQA---PVYLSERSLHPPSTYVMNNP 440
Query: 738 IKPTNVYLPHLQQMPVDEFPERPGQQECQYYVKTGDCKFKSSCRYHHPKARVSKSP--NL 565
+NVY+ H +QM V+EFPERPG+ EC Y++KTGDCKFKS+C++HHPK R+++ P NL
Sbjct: 441 AMESNVYMHHQKQMLVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPLCNL 500
Query: 564 SPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVSTAAPPQYI----MP 397
S GLPLRPDQ VC+++ RYGICK+G ACK+DH +G ST YI +
Sbjct: 501 SDKGLPLRPDQNVCTYYRRYGICKFGPACKFDHPAPSTMAGHDQQST-----YINSAGVD 555
Query: 396 SATSGGAE 373
A +GGAE
Sbjct: 556 VAENGGAE 563
Score = 68.2 bits (165), Expect = 8e-09
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Frame = -1
Query: 687 EFPERPGQQECQYYVKTGDCKFKSSCRYHHPKAR--VSKSPNLSPLGLPL-RPDQLVCSH 517
++P RP ++C +Y+KTG CKF +C+++HP R +K N R Q+ C +
Sbjct: 229 QYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNQAKKENAGEREEQAERSGQMECKY 288
Query: 516 FSRYGICKYGAACKYDHSPNHGSSGS 439
+ R G CK+G ACK++H+ SS S
Sbjct: 289 YLRSGGCKFGKACKFNHTRGKSSSAS 314
>ref|XP_003549835.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
[Glycine max]
Length = 501
Score = 343 bits (881), Expect = 7e-92
Identities = 174/337 (51%), Positives = 218/337 (64%), Gaps = 9/337 (2%)
Frame = -1
Query: 1440 YPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKNPKVLKASLSGDSDESQQXXXX 1261
YPLRPE DC FY++T +C FG NCKFNHP+ + K +G+ +E+ +
Sbjct: 150 YPLRPEAEDCAFYIKTGNCKFGFNCKFNHPIRRKSQAVKEK------AGEREETTERS-- 201
Query: 1260 XXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREK--SVVGPPAEFNFLGLPIRPGERE 1087
G ECKYY RSGGCKFGK+C+Y H R K + P E NFLGLPIR GERE
Sbjct: 202 --------GMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRLGERE 253
Query: 1086 CPFYMRTGSCKFASNCRFNHPDPTAGGADSGDNGT---SSGPLYSSIDSQPAVASWSLPR 916
CP+YMRTGSCKF +NC+FNHPDPTA G GD + + G + SQ +V SWS PR
Sbjct: 254 CPYYMRTGSCKFGANCKFNHPDPTAVGGVGGDPASGYGNGGSISLQGVSQTSVPSWSSPR 313
Query: 915 PSADTVPYSETSRSYVPVMMAP-QGAHS-GHEWNGYQAPLSPLYPLEGTLRPAVASSMNG 742
++ P+ VP+M++P QG + +WNGYQA + Y E + P MN
Sbjct: 314 TLNESSPF-------VPMMLSPTQGVSTQSSDWNGYQASV---YLPERNMHPPSTFVMNN 363
Query: 741 SIKPTNVYLPHLQQMPVDEFPERPGQQECQYYVKTGDCKFKSSCRYHHPKARVSKSP--N 568
TNVY+ H +QMPVDEFPERPG+ EC Y++KTGDCKFKS+C+++HPK RV++ P N
Sbjct: 364 PAIDTNVYMHHQKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFNHPKNRVARLPPCN 423
Query: 567 LSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPN 457
LS GLPLRPDQ VCSH+SRYGICK+G ACK+DH N
Sbjct: 424 LSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPIN 460
>ref|XP_003634306.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 2
[Vitis vinifera]
Length = 481
Score = 338 bits (868), Expect = 2e-90
Identities = 176/368 (47%), Positives = 226/368 (61%), Gaps = 9/368 (2%)
Frame = -1
Query: 1440 YPLRPEEPDCVFYVRTASCGFGSNCKFNHPLPHPKHSKNPKVLKASLSGDSDESQQXXXX 1261
YP+RP+ DC FY+RT +C FGSNCKFNHP+ KV + + +E +
Sbjct: 126 YPVRPDAVDCSFYLRTGTCKFGSNCKFNHPIRRKNQVAKEKVKEK----EKEEFPERP-- 179
Query: 1260 XXXXXXXVGQLECKYYLRSGGCKFGKACRYRHPREKSVVGPPAEFNFLGLPIRPGERECP 1081
GQ ECKYYLR+GGCKFGKACRY H + K P E NFLGLPIR GE+ECP
Sbjct: 180 --------GQTECKYYLRTGGCKFGKACRYNHTKAKPSAVPVLELNFLGLPIRMGEKECP 231
Query: 1080 FYMRTGSCKFASNCRFNHPDPTAGGADSGDNGTSSG---PLYSSIDSQPAVASWSLPRPS 910
+YMRTGSCK+ +NCRFNHPDPTA G +G +G PL + SQ +ASWS PR
Sbjct: 232 YYMRTGSCKYGANCRFNHPDPTAAGGYESPSGYGNGGSVPLQGA--SQSNMASWSSPRAL 289
Query: 909 ADTVPYSETSRSYVPVMMAP-QGAHSGH-EWNGYQAPLSPLYPLEGTLRPAVASSMNGSI 736
+ P +VP+M +P QG + EWNGYQ + L+ ++ P A +N +
Sbjct: 290 NEPAP-------FVPIMFSPTQGVPPPNPEWNGYQV---FMLLLKRSMHPPPAFVINNTA 339
Query: 735 KPTNVYLPHLQQMP--VDEFPERPGQQECQYYVKTGDCKFKSSCRYHHPKARVSKSP--N 568
NVY H QQ +++FPERPGQ EC Y++KTGDCKF+++C+YHHPK R+ KSP
Sbjct: 340 TDANVYGHHQQQQQSLIEDFPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCT 399
Query: 567 LSPLGLPLRPDQLVCSHFSRYGICKYGAACKYDHSPNHGSSGSPVVSTAAPPQYIMPSAT 388
LS GLPLRPDQ +C+H++RYGICK+G ACK+DH N+G+S S + + Q P
Sbjct: 400 LSDKGLPLRPDQNICTHYNRYGICKFGPACKFDHPVNYGNSASAPSAESGQDQ---PPPF 456
Query: 387 SGGAEASG 364
G A G
Sbjct: 457 GGSVTADG 464
Score = 70.5 bits (171), Expect = 2e-09
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Frame = -1
Query: 687 EFPERPGQQECQYYVKTGDCKFKSSCRYHHPKARVS-----KSPNLSPLGLPLRPDQLVC 523
++P RP +C +Y++TG CKF S+C+++HP R + K P RP Q C
Sbjct: 125 QYPVRPDAVDCSFYLRTGTCKFGSNCKFNHPIRRKNQVAKEKVKEKEKEEFPERPGQTEC 184
Query: 522 SHFSRYGICKYGAACKYDHS 463
++ R G CK+G AC+Y+H+
Sbjct: 185 KYYLRTGGCKFGKACRYNHT 204