BLASTX nr result

ID: Coptis24_contig00005212 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005212
         (1624 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514537.1| ubiquitin-protein ligase, putative [Ricinus ...   464   e-128
ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|2...   458   e-126
ref|XP_002270150.2| PREDICTED: F-box/FBD/LRR-repeat protein At1g...   433   e-119
ref|XP_004135131.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...   419   e-114
ref|XP_004155285.1| PREDICTED: LOW QUALITY PROTEIN: F-box/FBD/LR...   418   e-114

>ref|XP_002514537.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223546141|gb|EEF47643.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 421

 Score =  464 bits (1194), Expect = e-128
 Identities = 234/422 (55%), Positives = 298/422 (70%), Gaps = 1/422 (0%)
 Frame = +1

Query: 127  GSDRAPDIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTS 306
            G    PD I++LP ++IE IL  LP+RDAV+TSILS KWRYRW T+  LVFDD CV +  
Sbjct: 2    GDYEVPDFITDLPSSIIESILTRLPIRDAVKTSILSTKWRYRWATLTHLVFDDKCVAMYC 61

Query: 307  SSLAVTKTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLEL 486
                V +++ V F+ RAL LH GPI KF+LS SYLQ CPDIDQW+LFLS  ++KE+ LEL
Sbjct: 62   DK-GVLESRLVKFISRALFLHHGPIHKFQLSTSYLQCCPDIDQWLLFLSRSDIKELVLEL 120

Query: 487  EEKEWYKVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILS 666
             E EW++VPSCLF+C+ LT LEL RCE  PPP FKGF  LKSL+  Q       +ES++S
Sbjct: 121  GEGEWFRVPSCLFNCKKLTRLELTRCEFDPPPNFKGFLCLKSLNLYQVLVAPEAIESLIS 180

Query: 667  SCPILESFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIAD 846
             CP+LES +L+YFD+L +N+ APNLKYL LEGEFKDICLENTPLL  + IA+YMTE+IA+
Sbjct: 181  GCPLLESLSLSYFDSLVLNVRAPNLKYLCLEGEFKDICLENTPLLVAMSIAMYMTEDIAE 240

Query: 847  HLEATTTCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFE 1026
            H E +++CN IK LG VP LERL+   YF KYLS+   P                QV FE
Sbjct: 241  HFEQSSSCNFIKFLGGVPRLERLIGHIYFTKYLSIGDYPGRHPITYSCLKVIELYQVSFE 300

Query: 1027 DVNEISVAICLLVCSPNLEELLFSASSDNEACI-GPDMDYWDKQHPIDCSFKRLQIVNMT 1203
            D+ EI V + L+  SPNL+EL  S SS+  A +  PD+D+W K+ P +C+F++L +V +T
Sbjct: 301  DMKEIHVVLRLITNSPNLKELQISGSSNTLAAVEAPDLDFWLKECPRNCTFEKLGVVKLT 360

Query: 1204 DMSGVPDEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARIIYI 1383
            DMSGVP EMEF KFLLA SPVL+ MSI    Y+ ++G  +ML+ELL F R+S QA I++I
Sbjct: 361  DMSGVPQEMEFIKFLLANSPVLEMMSITPCVYV-MDGRVNMLVELLKFRRSSAQAEILFI 419

Query: 1384 QD 1389
            QD
Sbjct: 420  QD 421


>ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|222865020|gb|EEF02151.1|
            predicted protein [Populus trichocarpa]
          Length = 420

 Score =  458 bits (1178), Expect = e-126
 Identities = 234/419 (55%), Positives = 297/419 (70%), Gaps = 1/419 (0%)
 Frame = +1

Query: 127  GSDRAPDIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTS 306
            G    PD+IS+LP +++E IL  LP+RDAVRTSILS KWRYRWTT+  LVFDD C+ + S
Sbjct: 2    GDVEDPDLISDLPQSILESILTRLPIRDAVRTSILSSKWRYRWTTLTHLVFDDKCIRMCS 61

Query: 307  SSLAVTKTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLEL 486
                V +   V+F+ RAL LH+GPI KF+LS SYLQ CPDIDQWILFLS  ++KE+ LEL
Sbjct: 62   DR-PVVENCMVNFITRALFLHQGPIHKFQLSTSYLQCCPDIDQWILFLSRSDIKELVLEL 120

Query: 487  EEKEWYKVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILS 666
             E EW++VPSCLF+C+ LT LELFRCE  PPPTFKGF  L+SLS  Q       +ES++S
Sbjct: 121  GEGEWFRVPSCLFNCKKLTCLELFRCEFDPPPTFKGFLCLRSLSLHQVLVAPEAIESLIS 180

Query: 667  SCPILESFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIAD 846
             CP+LES  L+YFD+L++NI APNLKYL LEGEF DICLENTPLL  + +A+YM +E+A+
Sbjct: 181  GCPLLESLALSYFDSLALNIRAPNLKYLCLEGEFTDICLENTPLLVAMSVAMYMNDEMAE 240

Query: 847  HLEATTTCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFE 1026
              E ++ CN IK LG VP LERL    YF KYLS+   P                QV FE
Sbjct: 241  CFEQSSKCNFIKFLGGVPRLERLAGHIYFTKYLSIGDYPGSLAITYSHLKIIELYQVSFE 300

Query: 1027 DVNEISVAICLLVCSPNLEELLFSASSDNEACI-GPDMDYWDKQHPIDCSFKRLQIVNMT 1203
            D+ EI V + L++ SPNL+EL  S SS   A +  P++++W K+ P DC+FK+L++V MT
Sbjct: 301  DMKEIRVVLRLIMNSPNLKELRISGSSTAVASVEAPNLEFWAKECPKDCTFKQLKVVKMT 360

Query: 1204 DMSGVPDEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARIIY 1380
            DMSGVP EMEF KFLLA SPVL+TMSI    Y+ ++G  +MLI+L+ F RAS +A II+
Sbjct: 361  DMSGVPHEMEFMKFLLANSPVLETMSITPCVYV-MDGRLNMLIQLVRFRRASAEAEIIF 418


>ref|XP_002270150.2| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Vitis
            vinifera]
          Length = 414

 Score =  433 bits (1114), Expect = e-119
 Identities = 223/424 (52%), Positives = 291/424 (68%), Gaps = 5/424 (1%)
 Frame = +1

Query: 133  DRAP--DIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTS 306
            D AP  D+ISNLPL++IE IL+ LP+R+AVRTSILS KWRYRW+ I  LVF+D       
Sbjct: 2    DDAPKLDLISNLPLSIIESILVRLPIREAVRTSILSSKWRYRWSGITDLVFED------- 54

Query: 307  SSLAVTKTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLEL 486
              L +   K   F+ + LLLH GPI KF+++ S L+ CPDIDQWILFLS  +VKEI LEL
Sbjct: 55   -DLFLLNDKLKKFITQVLLLHAGPIHKFQITTSNLRICPDIDQWILFLSRNDVKEILLEL 113

Query: 487  EEKEWYKVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILS 666
             E EW+ VPSCLFSCQ LT LEL RCE+HPPPTFKGF +LK L+  Q       ++S++S
Sbjct: 114  GECEWFTVPSCLFSCQKLTRLELVRCELHPPPTFKGFLHLKILNLHQVSITCEAIQSLVS 173

Query: 667  SCPILESFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIAD 846
            SCP+LE  +L+YFD+L++NI APNLKYL LEGEFK+ICLENTP L ++ +A+YM++++ +
Sbjct: 174  SCPLLECLSLSYFDSLALNISAPNLKYLFLEGEFKEICLENTPGLVSVTVAMYMSDDVVE 233

Query: 847  HLEATTTCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFE 1026
            H E +++CN IK  G  P LERL+   YF K+LS+ +                  QV FE
Sbjct: 234  HFEQSSSCNFIKFFGGAPHLERLIGHIYFTKFLSIGNELGRHPITYHHLKNIELYQVSFE 293

Query: 1027 DVNEISVAICLLVCSPNLEELLFSASSDNEACIGP---DMDYWDKQHPIDCSFKRLQIVN 1197
            D+ EI V + L++ SPNLEEL  S SS+    + P   D+D+W+ + P+DC+FK LQ V 
Sbjct: 294  DIKEILVILRLIIYSPNLEELQISGSSNTS--VSPEVLDLDFWENECPLDCAFKCLQTVK 351

Query: 1198 MTDMSGVPDEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARII 1377
            MTD+SG+P EM F KFLL  SP+L+ MSI  S Y  +EG   M+ ELL F R SPQA+I 
Sbjct: 352  MTDISGLPHEMRFIKFLLENSPILEIMSITPSVY-AIEGRMHMVTELLEFRRVSPQAKIK 410

Query: 1378 YIQD 1389
            ++ D
Sbjct: 411  FVLD 414


>ref|XP_004135131.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Cucumis
            sativus]
          Length = 418

 Score =  419 bits (1076), Expect = e-114
 Identities = 214/416 (51%), Positives = 286/416 (68%), Gaps = 1/416 (0%)
 Frame = +1

Query: 145  DIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTSSSLAVT 324
            D +S+LP ++IE IL  LP+RDA+RTSILSR+WRY+WTT+ QLVFDD CV +++  +   
Sbjct: 8    DHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIY-- 65

Query: 325  KTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLELEEKEWY 504
                + F+   L LH GPI KF LS +YLQ+ PD+DQW+LFLS + ++E+ +EL + EW+
Sbjct: 66   -EDLIYFITHVLFLHEGPIHKFHLSATYLQNTPDLDQWLLFLSRKGIRELIIELGDGEWF 124

Query: 505  KVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILSSCPILE 684
            +V SCLF+C  LT LEL+RCE+ PPPTFKGF  LKSL   Q       +ES++S+CP+LE
Sbjct: 125  RVHSCLFNCSKLTLLELYRCELDPPPTFKGFLCLKSLKLHQVLIAPEDIESLISNCPLLE 184

Query: 685  SFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIADHLEATT 864
            S  L+YFD+L +NICAPNLKYL LEGEF+DICL+NTPLL +I +ALYM +E ++     +
Sbjct: 185  SLALSYFDSLVLNICAPNLKYLYLEGEFRDICLQNTPLLVSISVALYMNDE-SEPFGDLS 243

Query: 865  TCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFEDVNEIS 1044
             CN  K LG VP LE+L    YF KYLS+ +                  QV FED+NEI 
Sbjct: 244  DCNYEKFLGGVPYLEKLTGHVYFTKYLSIGNSARKMPISYIYLKSIELHQVSFEDMNEIL 303

Query: 1045 VAICLLVCSPNLEELLFSASSDNEACI-GPDMDYWDKQHPIDCSFKRLQIVNMTDMSGVP 1221
            V + L+  SPNLEEL  S SS+  A    PD+D+W+ + P + +F +L++V  TDMSGVP
Sbjct: 304  VVLRLITSSPNLEELQISGSSNPVAASEAPDLDFWENECPSNLTFGKLRVVKATDMSGVP 363

Query: 1222 DEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARIIYIQD 1389
             EMEF K+LL   PVL+ MSI+   Y+T +   +MLIELL F RASP+A I++IQ+
Sbjct: 364  HEMEFIKYLLRNCPVLEIMSIRPCVYVT-DRRLNMLIELLKFRRASPEAEILFIQE 418


>ref|XP_004155285.1| PREDICTED: LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein
            At1g13570-like [Cucumis sativus]
          Length = 418

 Score =  418 bits (1075), Expect = e-114
 Identities = 214/416 (51%), Positives = 286/416 (68%), Gaps = 1/416 (0%)
 Frame = +1

Query: 145  DIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTSSSLAVT 324
            D +S+LP ++IE IL  LP+RDA+RTSILSR+WRY+WTT+ QLVFDD CV +++  +   
Sbjct: 8    DHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIY-- 65

Query: 325  KTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLELEEKEWY 504
                + F+   L LH GPI KF LS +YLQ+ PD+DQW+LFLS + ++E+ +EL + EW+
Sbjct: 66   -EDLIYFITHVLXLHEGPIHKFHLSATYLQNTPDLDQWLLFLSRKGIRELIIELGDGEWF 124

Query: 505  KVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILSSCPILE 684
            +V SCLF+C  LT LEL+RCE+ PPPTFKGF  LKSL   Q       +ES++S+CP+LE
Sbjct: 125  RVHSCLFNCSKLTLLELYRCELDPPPTFKGFLCLKSLKLHQVLIAPEDIESLISNCPLLE 184

Query: 685  SFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIADHLEATT 864
            S  L+YFD+L +NICAPNLKYL LEGEF+DICL+NTPLL +I +ALYM +E ++     +
Sbjct: 185  SLALSYFDSLVLNICAPNLKYLYLEGEFRDICLQNTPLLVSISVALYMNDE-SEPFGDLS 243

Query: 865  TCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFEDVNEIS 1044
             CN  K LG VP LE+L    YF KYLS+ +                  QV FED+NEI 
Sbjct: 244  DCNYEKFLGGVPYLEKLTGHVYFTKYLSIGNSARKMPISYIYLKSIELHQVSFEDMNEIL 303

Query: 1045 VAICLLVCSPNLEELLFSASSDNEACI-GPDMDYWDKQHPIDCSFKRLQIVNMTDMSGVP 1221
            V + L+  SPNLEEL  S SS+  A    PD+D+W+ + P + +F +L++V  TDMSGVP
Sbjct: 304  VVLRLITSSPNLEELQISGSSNPVAASEAPDLDFWENECPSNLTFGKLRVVKATDMSGVP 363

Query: 1222 DEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARIIYIQD 1389
             EMEF K+LL   PVL+ MSI+   Y+T +   +MLIELL F RASP+A I++IQ+
Sbjct: 364  HEMEFIKYLLRNCPVLEIMSIRPCVYVT-DRRLNMLIELLKFRRASPEAEILFIQE 418


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