BLASTX nr result
ID: Coptis24_contig00005212
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005212
(1624 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002514537.1| ubiquitin-protein ligase, putative [Ricinus ... 464 e-128
ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|2... 458 e-126
ref|XP_002270150.2| PREDICTED: F-box/FBD/LRR-repeat protein At1g... 433 e-119
ref|XP_004135131.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g... 419 e-114
ref|XP_004155285.1| PREDICTED: LOW QUALITY PROTEIN: F-box/FBD/LR... 418 e-114
>ref|XP_002514537.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223546141|gb|EEF47643.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 421
Score = 464 bits (1194), Expect = e-128
Identities = 234/422 (55%), Positives = 298/422 (70%), Gaps = 1/422 (0%)
Frame = +1
Query: 127 GSDRAPDIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTS 306
G PD I++LP ++IE IL LP+RDAV+TSILS KWRYRW T+ LVFDD CV +
Sbjct: 2 GDYEVPDFITDLPSSIIESILTRLPIRDAVKTSILSTKWRYRWATLTHLVFDDKCVAMYC 61
Query: 307 SSLAVTKTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLEL 486
V +++ V F+ RAL LH GPI KF+LS SYLQ CPDIDQW+LFLS ++KE+ LEL
Sbjct: 62 DK-GVLESRLVKFISRALFLHHGPIHKFQLSTSYLQCCPDIDQWLLFLSRSDIKELVLEL 120
Query: 487 EEKEWYKVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILS 666
E EW++VPSCLF+C+ LT LEL RCE PPP FKGF LKSL+ Q +ES++S
Sbjct: 121 GEGEWFRVPSCLFNCKKLTRLELTRCEFDPPPNFKGFLCLKSLNLYQVLVAPEAIESLIS 180
Query: 667 SCPILESFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIAD 846
CP+LES +L+YFD+L +N+ APNLKYL LEGEFKDICLENTPLL + IA+YMTE+IA+
Sbjct: 181 GCPLLESLSLSYFDSLVLNVRAPNLKYLCLEGEFKDICLENTPLLVAMSIAMYMTEDIAE 240
Query: 847 HLEATTTCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFE 1026
H E +++CN IK LG VP LERL+ YF KYLS+ P QV FE
Sbjct: 241 HFEQSSSCNFIKFLGGVPRLERLIGHIYFTKYLSIGDYPGRHPITYSCLKVIELYQVSFE 300
Query: 1027 DVNEISVAICLLVCSPNLEELLFSASSDNEACI-GPDMDYWDKQHPIDCSFKRLQIVNMT 1203
D+ EI V + L+ SPNL+EL S SS+ A + PD+D+W K+ P +C+F++L +V +T
Sbjct: 301 DMKEIHVVLRLITNSPNLKELQISGSSNTLAAVEAPDLDFWLKECPRNCTFEKLGVVKLT 360
Query: 1204 DMSGVPDEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARIIYI 1383
DMSGVP EMEF KFLLA SPVL+ MSI Y+ ++G +ML+ELL F R+S QA I++I
Sbjct: 361 DMSGVPQEMEFIKFLLANSPVLEMMSITPCVYV-MDGRVNMLVELLKFRRSSAQAEILFI 419
Query: 1384 QD 1389
QD
Sbjct: 420 QD 421
>ref|XP_002315980.1| predicted protein [Populus trichocarpa] gi|222865020|gb|EEF02151.1|
predicted protein [Populus trichocarpa]
Length = 420
Score = 458 bits (1178), Expect = e-126
Identities = 234/419 (55%), Positives = 297/419 (70%), Gaps = 1/419 (0%)
Frame = +1
Query: 127 GSDRAPDIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTS 306
G PD+IS+LP +++E IL LP+RDAVRTSILS KWRYRWTT+ LVFDD C+ + S
Sbjct: 2 GDVEDPDLISDLPQSILESILTRLPIRDAVRTSILSSKWRYRWTTLTHLVFDDKCIRMCS 61
Query: 307 SSLAVTKTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLEL 486
V + V+F+ RAL LH+GPI KF+LS SYLQ CPDIDQWILFLS ++KE+ LEL
Sbjct: 62 DR-PVVENCMVNFITRALFLHQGPIHKFQLSTSYLQCCPDIDQWILFLSRSDIKELVLEL 120
Query: 487 EEKEWYKVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILS 666
E EW++VPSCLF+C+ LT LELFRCE PPPTFKGF L+SLS Q +ES++S
Sbjct: 121 GEGEWFRVPSCLFNCKKLTCLELFRCEFDPPPTFKGFLCLRSLSLHQVLVAPEAIESLIS 180
Query: 667 SCPILESFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIAD 846
CP+LES L+YFD+L++NI APNLKYL LEGEF DICLENTPLL + +A+YM +E+A+
Sbjct: 181 GCPLLESLALSYFDSLALNIRAPNLKYLCLEGEFTDICLENTPLLVAMSVAMYMNDEMAE 240
Query: 847 HLEATTTCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFE 1026
E ++ CN IK LG VP LERL YF KYLS+ P QV FE
Sbjct: 241 CFEQSSKCNFIKFLGGVPRLERLAGHIYFTKYLSIGDYPGSLAITYSHLKIIELYQVSFE 300
Query: 1027 DVNEISVAICLLVCSPNLEELLFSASSDNEACI-GPDMDYWDKQHPIDCSFKRLQIVNMT 1203
D+ EI V + L++ SPNL+EL S SS A + P++++W K+ P DC+FK+L++V MT
Sbjct: 301 DMKEIRVVLRLIMNSPNLKELRISGSSTAVASVEAPNLEFWAKECPKDCTFKQLKVVKMT 360
Query: 1204 DMSGVPDEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARIIY 1380
DMSGVP EMEF KFLLA SPVL+TMSI Y+ ++G +MLI+L+ F RAS +A II+
Sbjct: 361 DMSGVPHEMEFMKFLLANSPVLETMSITPCVYV-MDGRLNMLIQLVRFRRASAEAEIIF 418
>ref|XP_002270150.2| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Vitis
vinifera]
Length = 414
Score = 433 bits (1114), Expect = e-119
Identities = 223/424 (52%), Positives = 291/424 (68%), Gaps = 5/424 (1%)
Frame = +1
Query: 133 DRAP--DIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTS 306
D AP D+ISNLPL++IE IL+ LP+R+AVRTSILS KWRYRW+ I LVF+D
Sbjct: 2 DDAPKLDLISNLPLSIIESILVRLPIREAVRTSILSSKWRYRWSGITDLVFED------- 54
Query: 307 SSLAVTKTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLEL 486
L + K F+ + LLLH GPI KF+++ S L+ CPDIDQWILFLS +VKEI LEL
Sbjct: 55 -DLFLLNDKLKKFITQVLLLHAGPIHKFQITTSNLRICPDIDQWILFLSRNDVKEILLEL 113
Query: 487 EEKEWYKVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILS 666
E EW+ VPSCLFSCQ LT LEL RCE+HPPPTFKGF +LK L+ Q ++S++S
Sbjct: 114 GECEWFTVPSCLFSCQKLTRLELVRCELHPPPTFKGFLHLKILNLHQVSITCEAIQSLVS 173
Query: 667 SCPILESFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIAD 846
SCP+LE +L+YFD+L++NI APNLKYL LEGEFK+ICLENTP L ++ +A+YM++++ +
Sbjct: 174 SCPLLECLSLSYFDSLALNISAPNLKYLFLEGEFKEICLENTPGLVSVTVAMYMSDDVVE 233
Query: 847 HLEATTTCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFE 1026
H E +++CN IK G P LERL+ YF K+LS+ + QV FE
Sbjct: 234 HFEQSSSCNFIKFFGGAPHLERLIGHIYFTKFLSIGNELGRHPITYHHLKNIELYQVSFE 293
Query: 1027 DVNEISVAICLLVCSPNLEELLFSASSDNEACIGP---DMDYWDKQHPIDCSFKRLQIVN 1197
D+ EI V + L++ SPNLEEL S SS+ + P D+D+W+ + P+DC+FK LQ V
Sbjct: 294 DIKEILVILRLIIYSPNLEELQISGSSNTS--VSPEVLDLDFWENECPLDCAFKCLQTVK 351
Query: 1198 MTDMSGVPDEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARII 1377
MTD+SG+P EM F KFLL SP+L+ MSI S Y +EG M+ ELL F R SPQA+I
Sbjct: 352 MTDISGLPHEMRFIKFLLENSPILEIMSITPSVY-AIEGRMHMVTELLEFRRVSPQAKIK 410
Query: 1378 YIQD 1389
++ D
Sbjct: 411 FVLD 414
>ref|XP_004135131.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Cucumis
sativus]
Length = 418
Score = 419 bits (1076), Expect = e-114
Identities = 214/416 (51%), Positives = 286/416 (68%), Gaps = 1/416 (0%)
Frame = +1
Query: 145 DIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTSSSLAVT 324
D +S+LP ++IE IL LP+RDA+RTSILSR+WRY+WTT+ QLVFDD CV +++ +
Sbjct: 8 DHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIY-- 65
Query: 325 KTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLELEEKEWY 504
+ F+ L LH GPI KF LS +YLQ+ PD+DQW+LFLS + ++E+ +EL + EW+
Sbjct: 66 -EDLIYFITHVLFLHEGPIHKFHLSATYLQNTPDLDQWLLFLSRKGIRELIIELGDGEWF 124
Query: 505 KVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILSSCPILE 684
+V SCLF+C LT LEL+RCE+ PPPTFKGF LKSL Q +ES++S+CP+LE
Sbjct: 125 RVHSCLFNCSKLTLLELYRCELDPPPTFKGFLCLKSLKLHQVLIAPEDIESLISNCPLLE 184
Query: 685 SFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIADHLEATT 864
S L+YFD+L +NICAPNLKYL LEGEF+DICL+NTPLL +I +ALYM +E ++ +
Sbjct: 185 SLALSYFDSLVLNICAPNLKYLYLEGEFRDICLQNTPLLVSISVALYMNDE-SEPFGDLS 243
Query: 865 TCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFEDVNEIS 1044
CN K LG VP LE+L YF KYLS+ + QV FED+NEI
Sbjct: 244 DCNYEKFLGGVPYLEKLTGHVYFTKYLSIGNSARKMPISYIYLKSIELHQVSFEDMNEIL 303
Query: 1045 VAICLLVCSPNLEELLFSASSDNEACI-GPDMDYWDKQHPIDCSFKRLQIVNMTDMSGVP 1221
V + L+ SPNLEEL S SS+ A PD+D+W+ + P + +F +L++V TDMSGVP
Sbjct: 304 VVLRLITSSPNLEELQISGSSNPVAASEAPDLDFWENECPSNLTFGKLRVVKATDMSGVP 363
Query: 1222 DEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARIIYIQD 1389
EMEF K+LL PVL+ MSI+ Y+T + +MLIELL F RASP+A I++IQ+
Sbjct: 364 HEMEFIKYLLRNCPVLEIMSIRPCVYVT-DRRLNMLIELLKFRRASPEAEILFIQE 418
>ref|XP_004155285.1| PREDICTED: LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein
At1g13570-like [Cucumis sativus]
Length = 418
Score = 418 bits (1075), Expect = e-114
Identities = 214/416 (51%), Positives = 286/416 (68%), Gaps = 1/416 (0%)
Frame = +1
Query: 145 DIISNLPLNVIEGILMCLPLRDAVRTSILSRKWRYRWTTIPQLVFDDTCVPVTSSSLAVT 324
D +S+LP ++IE IL LP+RDA+RTSILSR+WRY+WTT+ QLVFDD CV +++ +
Sbjct: 8 DHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAMSNDGIY-- 65
Query: 325 KTKFVSFVDRALLLHRGPIQKFKLSISYLQSCPDIDQWILFLSWRNVKEISLELEEKEWY 504
+ F+ L LH GPI KF LS +YLQ+ PD+DQW+LFLS + ++E+ +EL + EW+
Sbjct: 66 -EDLIYFITHVLXLHEGPIHKFHLSATYLQNTPDLDQWLLFLSRKGIRELIIELGDGEWF 124
Query: 505 KVPSCLFSCQYLTHLELFRCEVHPPPTFKGFSNLKSLSFQQSYFENGVVESILSSCPILE 684
+V SCLF+C LT LEL+RCE+ PPPTFKGF LKSL Q +ES++S+CP+LE
Sbjct: 125 RVHSCLFNCSKLTLLELYRCELDPPPTFKGFLCLKSLKLHQVLIAPEDIESLISNCPLLE 184
Query: 685 SFTLTYFDTLSMNICAPNLKYLRLEGEFKDICLENTPLLETICIALYMTEEIADHLEATT 864
S L+YFD+L +NICAPNLKYL LEGEF+DICL+NTPLL +I +ALYM +E ++ +
Sbjct: 185 SLALSYFDSLVLNICAPNLKYLYLEGEFRDICLQNTPLLVSISVALYMNDE-SEPFGDLS 243
Query: 865 TCNLIKALGNVPALERLVAESYFVKYLSVKSVPSXXXXXXXXXXXXXXXQVGFEDVNEIS 1044
CN K LG VP LE+L YF KYLS+ + QV FED+NEI
Sbjct: 244 DCNYEKFLGGVPYLEKLTGHVYFTKYLSIGNSARKMPISYIYLKSIELHQVSFEDMNEIL 303
Query: 1045 VAICLLVCSPNLEELLFSASSDNEACI-GPDMDYWDKQHPIDCSFKRLQIVNMTDMSGVP 1221
V + L+ SPNLEEL S SS+ A PD+D+W+ + P + +F +L++V TDMSGVP
Sbjct: 304 VVLRLITSSPNLEELQISGSSNPVAASEAPDLDFWENECPSNLTFGKLRVVKATDMSGVP 363
Query: 1222 DEMEFTKFLLAKSPVLKTMSIKSSTYLTVEGAWDMLIELLGFPRASPQARIIYIQD 1389
EMEF K+LL PVL+ MSI+ Y+T + +MLIELL F RASP+A I++IQ+
Sbjct: 364 HEMEFIKYLLRNCPVLEIMSIRPCVYVT-DRRLNMLIELLKFRRASPEAEILFIQE 418