BLASTX nr result
ID: Coptis24_contig00005174
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005174
(2506 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containi... 651 0.0
ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containi... 607 e-171
ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containi... 606 e-171
ref|XP_003602247.1| Pentatricopeptide repeat-containing protein ... 602 e-169
ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containi... 601 e-169
>ref|XP_002272755.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
[Vitis vinifera]
Length = 672
Score = 651 bits (1680), Expect = 0.0
Identities = 352/641 (54%), Positives = 443/641 (69%), Gaps = 8/641 (1%)
Frame = -2
Query: 2319 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2140
S+R LS+ TPEE R LRIEPPL+S+R Q+ E V
Sbjct: 30 SLRHLSFVTPEEAAAERRRRKRRLRIEPPLSSLRHQQAQPRQNPNPNHNPNAPKLP-EPV 88
Query: 2139 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1960
SAL G RL+LHN+IL LIR NDLDEAAL TRHSIYSNC+PTIFT N+V+AALLRQSRYSD
Sbjct: 89 SALSGNRLNLHNRILGLIRVNDLDEAALLTRHSIYSNCRPTIFTVNSVLAALLRQSRYSD 148
Query: 1959 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1780
+LSLHRF+TQAGVAANVVTHNLLINAY DCRKTDTALEHYKQLIN+APF+PSPTTYRIL+
Sbjct: 149 LLSLHRFITQAGVAANVVTHNLLINAYLDCRKTDTALEHYKQLINDAPFNPSPTTYRILI 208
Query: 1779 KGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDRALALYEELKGKLDF 1600
KG+VDN KV+RA+ELK+EML KG ADPVVY+YL+LG V+N + D LYEELK KL
Sbjct: 209 KGIVDNGKVERALELKEEMLGKGFAADPVVYSYLMLGHVRNLNADGVFELYEELKEKLGD 268
Query: 1599 VNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDEA 1420
V+DG+V G+LMK YFL+G++KEAM+ YA+ GEGS I+M+A+A+NSVL AL KNGK DEA
Sbjct: 269 VDDGVVVGSLMKGYFLRGMEKEAMQCYAEAVGEGSKIRMSAVAFNSVLDALSKNGKFDEA 328
Query: 1419 LQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSFN 1240
+ LFERM E++PPR+L++NLGS+NVMVD FC G+F DAIEVFRKMGEKR S DTLS+N
Sbjct: 329 MLLFERMMAEYNPPRRLSMNLGSFNVMVDGFCTAGRFKDAIEVFRKMGEKRCSADTLSYN 388
Query: 1239 NLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFGKMVE 1060
NLI+QLC N ++ +AEELY EM G NPDE+TYVLL+D+CF+++R DD A YF KMVE
Sbjct: 389 NLIEQLCNNGMLAEAEELYGEMAN-KGVNPDEFTYVLLMDTCFKENRTDDGAGYFRKMVE 447
Query: 1059 SGLKPNLATYNRVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLDEV 880
+GL+PNLA Y+++VDGL+K GKIDEA F+ M+ KL++D A+++ +++AL E K D+V
Sbjct: 448 TGLRPNLAVYSKLVDGLVKVGKIDEAKSFYDLMVKKLKMDEASYKFLMKALFEVGKHDDV 507
Query: 879 LKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDLVXXXXXXXXXXXXXXXXXXXXXXX 700
LK++ +ML D+ +++ EFV++ LRKEGRE D+V
Sbjct: 508 LKMIGDMLDDDASEFTTDLQEFVKEELRKEGREEDVV----------------------K 545
Query: 699 XXXXXXXXXXXXXXXXAGGTYSLFGDTKPSNGNVSPLSLFGDTKTSNS-DV---PSAETF 532
A T + K + ++ P LFG T N DV + E
Sbjct: 546 LMEDKEREKAEAQAKEAAATEAAKASAKAAVSSLLPSKLFGSKDTENEPDVVIGNTVEAI 605
Query: 531 SMNGEAPSGNQEGSGGAPA----VEATPALGVVEETIDASD 421
S+N E QE G +PA EAT A + + + D
Sbjct: 606 SVNEEVEDVEQESIGDSPAESGSEEATKAHNSADLDVKSDD 646
>ref|XP_004146221.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
[Cucumis sativus] gi|449511036|ref|XP_004163845.1|
PREDICTED: pentatricopeptide repeat-containing protein
At3g49240-like [Cucumis sativus]
Length = 624
Score = 607 bits (1566), Expect = e-171
Identities = 302/517 (58%), Positives = 391/517 (75%), Gaps = 1/517 (0%)
Frame = -2
Query: 2319 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2140
++R LS+A+ EE R LRIEPPL+S R PEH+
Sbjct: 34 TLRFLSFASAEEADAERRRRKRRLRIEPPLSSSSAARPLTQPPRSQTPQNPNAPKIPEHI 93
Query: 2139 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1960
SAL G RL+LHN+ILTLIRENDL+EAAL+TRHSIYSNC+PTIFT NAV+ A LRQS+Y+D
Sbjct: 94 SALSGNRLNLHNRILTLIRENDLEEAALFTRHSIYSNCRPTIFTVNAVLNAQLRQSKYAD 153
Query: 1959 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1780
+LSLHRF+TQAGV N++THNL+ Y DCRK DTA+EHYKQLIN+APF+PSPTTYRIL+
Sbjct: 154 LLSLHRFITQAGVVPNIITHNLIFQTYLDCRKPDTAMEHYKQLINDAPFNPSPTTYRILI 213
Query: 1779 KGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDRALALYEELKGKLD- 1603
KGLVDN K++RA+ELKDEM+EKG DP++Y+YL+ G V++ D D L+EELK KL
Sbjct: 214 KGLVDNNKLERAMELKDEMIEKGFAPDPLIYHYLMGGCVRSLDPDGVFKLFEELKEKLGA 273
Query: 1602 FVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDE 1423
V DG+VYGNLMK YF+K +++EAM+ Y + G+ S +KM+A+AYNSVL AL +NGK E
Sbjct: 274 TVEDGVVYGNLMKGYFMKEMEEEAMKCYEETVGDNSVVKMSAIAYNSVLDALCRNGKFGE 333
Query: 1422 ALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSF 1243
AL LF+RM +EH PPR L VNLGS+NVMVD +C +G+F +AIEVF KMG+ R PDTLSF
Sbjct: 334 ALTLFDRMTKEHRPPRHLAVNLGSFNVMVDGYCIEGRFKEAIEVFEKMGDYRCCPDTLSF 393
Query: 1242 NNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFGKMV 1063
NNLI+QLC N ++ +AE LY M + G NPDE+TY LL+DSCF+++RADDAA YF KMV
Sbjct: 394 NNLIEQLCNNGMLAEAEMLYGTMDD-KGVNPDEFTYGLLMDSCFKKNRADDAAAYFRKMV 452
Query: 1062 ESGLKPNLATYNRVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLDE 883
+SGL+PN+A YN +VD L+K GKID+A FF M+ KL++DA++++ +++AL E+ K+DE
Sbjct: 453 DSGLRPNIAVYNILVDELVKLGKIDDAKSFFDLMVKKLKMDASSYQFIMKALSESGKMDE 512
Query: 882 VLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 772
+L +V +L D+ + + E+ EFVR LRKE RE DL
Sbjct: 513 ILNVVDTLLDDDGIEFSEELQEFVRGELRKENREEDL 549
>ref|XP_003523367.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
[Glycine max]
Length = 631
Score = 606 bits (1563), Expect = e-171
Identities = 303/517 (58%), Positives = 392/517 (75%), Gaps = 1/517 (0%)
Frame = -2
Query: 2319 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2140
SIR LS+++PEE R LR+EPPL+++ + PEHV
Sbjct: 27 SIRLLSFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPLQSPYYLNPNNPKLPEHV 86
Query: 2139 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1960
SAL G RL+LHN+ILTLIRENDLDEAALYTRHSIYSNC+PTIFT NAV+AALLRQSRYSD
Sbjct: 87 SALTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSD 146
Query: 1959 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1780
+LSLHRF+TQAGV N++THNL+ Y DCRK DTALEHYKQ +N+AP +PSPTTYR+L+
Sbjct: 147 LLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLI 206
Query: 1779 KGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDRALALYEELKGKL-D 1603
KGL+DN K++RA+++K EM KG DP+VY+YL+LG + DGD L LYEEL+ +L
Sbjct: 207 KGLIDNSKLERAMDIKTEMDSKGFAPDPLVYHYLMLGHARVSDGDAILRLYEELRERLGG 266
Query: 1602 FVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDE 1423
V DGIV+G LMK YF+KG++KEAME Y + G+ KM+A+ YNSVL AL KNG+ DE
Sbjct: 267 VVQDGIVFGCLMKGYFVKGMEKEAMECYEEALGKK---KMSAVGYNSVLDALSKNGRFDE 323
Query: 1422 ALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDTLSF 1243
AL+LF+RM +EH P ++L+VNLGS+NV+VD +C++G+F++A+EVFRKMGE R SPDTLSF
Sbjct: 324 ALRLFDRMMKEHEPLKRLSVNLGSFNVIVDGYCDEGRFEEAMEVFRKMGEYRCSPDTLSF 383
Query: 1242 NNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFGKMV 1063
NNLI +LC N + +AEE+Y EM E G +PDE+TY LL+D+CF ++RADDAA YF KMV
Sbjct: 384 NNLIDRLCDNGRIVEAEEVYGEM-EGKGVSPDEFTYGLLMDACFRENRADDAAAYFRKMV 442
Query: 1062 ESGLKPNLATYNRVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLDE 883
+SGL+PNLA YNR+V GL+K GKIDEA GFF M+ KL++D +++ +++ L + +LDE
Sbjct: 443 DSGLRPNLAVYNRLVGGLVKVGKIDEAKGFFELMVKKLKMDVTSYQFIMKVLSDEGRLDE 502
Query: 882 VLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 772
+LK+V +L D V + E EFV+ LRKEGRE +L
Sbjct: 503 MLKIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEEL 539
>ref|XP_003602247.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491295|gb|AES72498.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 704
Score = 602 bits (1551), Expect = e-169
Identities = 306/520 (58%), Positives = 388/520 (74%), Gaps = 6/520 (1%)
Frame = -2
Query: 2313 RCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXP----- 2149
R LS+A+PEE R LRIEPPL+++ ++
Sbjct: 31 RFLSFASPEEAAAERRRRKRQLRIEPPLSALNRNQQQSPNPNPKSQSPPYYLNPTDPKLP 90
Query: 2148 EHVSALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSR 1969
EH SAL G R++LHN ILTLIR+NDLDEAALYTRHSIYSNC+PTIFT NAV+ AL RQSR
Sbjct: 91 EHASALTGNRVNLHNTILTLIRQNDLDEAALYTRHSIYSNCRPTIFTINAVLFALFRQSR 150
Query: 1968 YSDMLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYR 1789
YSD+LSLHRF+TQAGV N++T+NL+ Y DCRK DTALE++KQ I +APF+PSPTT+R
Sbjct: 151 YSDLLSLHRFITQAGVVPNIITYNLIFQTYLDCRKPDTALENFKQFIKDAPFNPSPTTFR 210
Query: 1788 ILVKGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDRALALYEELKGK 1609
IL+KGLVDN ++DRA+++KD+M G DP+VY+YL+LG ++ DGD L +YEELK K
Sbjct: 211 ILIKGLVDNNRLDRAMDIKDQMNASGFAPDPLVYHYLMLGHARSSDGDGVLRVYEELKEK 270
Query: 1608 L-DFVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGK 1432
L V DG+V G LMK YFLKG++KEAME Y ++ EG KM+ +AYNSVL AL KNGK
Sbjct: 271 LGGVVEDGVVLGCLMKGYFLKGMEKEAMECYQEVFVEGK--KMSDIAYNSVLDALAKNGK 328
Query: 1431 SDEALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRSSPDT 1252
DEA++LF+RM +EH+PP KL VNLGS+NVMVD +C +GKF +AIEVFR MGE R PDT
Sbjct: 329 FDEAMRLFDRMIKEHNPPAKLAVNLGSFNVMVDGYCAEGKFKEAIEVFRSMGESRCKPDT 388
Query: 1251 LSFNNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFG 1072
LSFNNLI+QLC N ++ +AEE+Y EM E G NPDEYTY LL+D+CF+++R DDAA YF
Sbjct: 389 LSFNNLIEQLCNNGMILEAEEVYGEM-EGKGVNPDEYTYGLLMDTCFKENRPDDAASYFK 447
Query: 1071 KMVESGLKPNLATYNRVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAK 892
KMVESGL+PNLA YNR+VDGL+K GKID+A FF M+ KL++D A+++ M++ L EA +
Sbjct: 448 KMVESGLRPNLAVYNRLVDGLVKVGKIDDAKFFFDLMVKKLKMDVASYQFMMKVLSEAGR 507
Query: 891 LDEVLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 772
LD+VL++V+ +L D V + E EFV+ LRKEGRE DL
Sbjct: 508 LDDVLQIVNMLLDDNGVDFDEEFQEFVKVELRKEGREEDL 547
>ref|XP_003526715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like
[Glycine max]
Length = 632
Score = 601 bits (1550), Expect = e-169
Identities = 300/518 (57%), Positives = 395/518 (76%), Gaps = 2/518 (0%)
Frame = -2
Query: 2319 SIRCLSYATPEEXXXXXXXXXRTLRIEPPLNSIRPQRRXXXXXXXXXXXXXXXXXXPEHV 2140
S+R +S+++PEE R LR+EPPL+++ + PEHV
Sbjct: 27 SLRLISFSSPEEAAAERRRRKRQLRMEPPLSALNRTQTAPKPQSSPYYLNPNNPKLPEHV 86
Query: 2139 SALKGKRLDLHNKILTLIRENDLDEAALYTRHSIYSNCKPTIFTCNAVMAALLRQSRYSD 1960
S+L G RL+LHN+ILTLIRENDLDEAALYTRHSIYSNC+PTIFT NAV+AALLRQSRYSD
Sbjct: 87 SSLTGNRLNLHNRILTLIRENDLDEAALYTRHSIYSNCRPTIFTINAVLAALLRQSRYSD 146
Query: 1959 MLSLHRFVTQAGVAANVVTHNLLINAYCDCRKTDTALEHYKQLINNAPFDPSPTTYRILV 1780
LSLHRF+TQAGV N++THNL+ Y DCRK DTALEHYKQ +N+AP +PSPTTYR+L+
Sbjct: 147 FLSLHRFITQAGVVPNIITHNLVFQTYLDCRKPDTALEHYKQFLNDAPMNPSPTTYRVLI 206
Query: 1779 KGLVDNLKVDRAVELKDEMLEKGLVADPVVYNYLILGLVKNEDGDRALALYEELKGKL-D 1603
KGL+DN K++RA+E+K EM +G DP+VY+YL+LG + DGD L LYEEL+ +L
Sbjct: 207 KGLIDNNKLERALEIKTEMDSRGFSPDPLVYHYLMLGHTRVSDGDGVLRLYEELRERLGG 266
Query: 1602 FVNDGIVYGNLMKAYFLKGLDKEAMEIYADLSGEGSSIKMNALAYNSVLQALIKNGKSDE 1423
V DG+V+G LMK YFLKG++KEAME Y ++ G+ KM+A+ YNSVL AL KNG+ DE
Sbjct: 267 VVEDGVVFGCLMKGYFLKGMEKEAMECYEEVLGKK---KMSAVGYNSVLDALSKNGRLDE 323
Query: 1422 ALQLFERMKEEHSPPRKLTVNLGSYNVMVDWFCEQGKFDDAIEVFRKMGEKRS-SPDTLS 1246
AL+LF+RM +E+ PP++L+VNLGS+NV+VD +C +G+F++A+EVFRK+GE R SPDTLS
Sbjct: 324 ALRLFDRMMKEYEPPKRLSVNLGSFNVIVDGYCGEGRFEEAMEVFRKIGEYRGCSPDTLS 383
Query: 1245 FNNLIQQLCANDLMPKAEELYREMGEIPGANPDEYTYVLLIDSCFEQSRADDAAEYFGKM 1066
FNNLI++LC N + +AEE+Y EM E G +PDE+TY LL+D+CF ++RADD+A YF KM
Sbjct: 384 FNNLIERLCDNGRIVEAEEVYGEM-EGKGVSPDEFTYGLLMDACFRENRADDSAAYFRKM 442
Query: 1065 VESGLKPNLATYNRVVDGLIKAGKIDEANGFFSQMIVKLRLDAANFEVMLRALCEAAKLD 886
V+SGL+PNLA YNR+VDGL+K GKIDEA GFF M+ KL++D A+++ M++ L + +LD
Sbjct: 443 VDSGLRPNLAVYNRLVDGLVKVGKIDEAKGFFELMVKKLKMDVASYQFMMKVLSDEGRLD 502
Query: 885 EVLKLVSEMLKDEKVGLNSEMDEFVRDALRKEGREGDL 772
E+L++V +L D V + E EFV+ LRKEGRE +L
Sbjct: 503 EMLQIVDTLLDDNGVDFDEEFQEFVKGELRKEGREEEL 540