BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005141
         (1029 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vi...   233   4e-59
emb|CBI37850.3| unnamed protein product [Vitis vinifera]              233   4e-59
ref|XP_002516388.1| splicing factor, putative [Ricinus communis]...   208   2e-51
ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like [Glyc...   206   7e-51
gb|ADE76571.1| unknown [Picea sitchensis]                             205   1e-50

>ref|XP_002279887.2| PREDICTED: RNA-binding protein rsd1-like [Vitis vinifera]
          Length = 609

 Score =  233 bits (595), Expect = 4e-59
 Identities = 125/221 (56%), Positives = 144/221 (65%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1   DDDDGGGMSLNARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGM-PSTI 177
           DDD+GGG+SLNARSRAILMQKLDRSG    I GS+ +PVLN  GLPL+TA + G  P   
Sbjct: 416 DDDEGGGLSLNARSRAILMQKLDRSGTTPGIAGSLGSPVLNNPGLPLSTAPILGAAPVVS 475

Query: 178 PIVXXXXXXXXXXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDL 357
           P+V                +   VP VT  SID IG+PSECL+LK+MFDP +ETEPDFDL
Sbjct: 476 PLVAPLVQAPVPGLAGLPGAGLQVPAVTVPSIDTIGVPSECLMLKNMFDPKLETEPDFDL 535

Query: 358 DIKEDVQAECSKFGLVKHIYVDKHSAGFVYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 537
           DIKEDVQ ECSKFG VKHIYVDK+SAGFV+L                             
Sbjct: 536 DIKEDVQDECSKFGTVKHIYVDKNSAGFVFL----------------------------- 566

Query: 538 XXXXXXXAMNAQRALHGRWFAGKMITASYMVPQNYEAKFPD 660
                  A++AQRALHGRWFAGKMITA++M+PQNYEAKFPD
Sbjct: 567 RFENTQAAISAQRALHGRWFAGKMITATFMLPQNYEAKFPD 607


>emb|CBI37850.3| unnamed protein product [Vitis vinifera]
          Length = 427

 Score =  233 bits (595), Expect = 4e-59
 Identities = 125/221 (56%), Positives = 144/221 (65%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1   DDDDGGGMSLNARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGM-PSTI 177
           DDD+GGG+SLNARSRAILMQKLDRSG    I GS+ +PVLN  GLPL+TA + G  P   
Sbjct: 234 DDDEGGGLSLNARSRAILMQKLDRSGTTPGIAGSLGSPVLNNPGLPLSTAPILGAAPVVS 293

Query: 178 PIVXXXXXXXXXXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDL 357
           P+V                +   VP VT  SID IG+PSECL+LK+MFDP +ETEPDFDL
Sbjct: 294 PLVAPLVQAPVPGLAGLPGAGLQVPAVTVPSIDTIGVPSECLMLKNMFDPKLETEPDFDL 353

Query: 358 DIKEDVQAECSKFGLVKHIYVDKHSAGFVYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 537
           DIKEDVQ ECSKFG VKHIYVDK+SAGFV+L                             
Sbjct: 354 DIKEDVQDECSKFGTVKHIYVDKNSAGFVFL----------------------------- 384

Query: 538 XXXXXXXAMNAQRALHGRWFAGKMITASYMVPQNYEAKFPD 660
                  A++AQRALHGRWFAGKMITA++M+PQNYEAKFPD
Sbjct: 385 RFENTQAAISAQRALHGRWFAGKMITATFMLPQNYEAKFPD 425


>ref|XP_002516388.1| splicing factor, putative [Ricinus communis]
           gi|223544486|gb|EEF46005.1| splicing factor, putative
           [Ricinus communis]
          Length = 609

 Score =  208 bits (530), Expect = 2e-51
 Identities = 120/221 (54%), Positives = 140/221 (63%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1   DDDDGGGMSLNARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGMPSTIP 180
           DDD+GGG++LNARSRAILMQKLDRSG  SSI GS+ T   + +GL + TA + G    IP
Sbjct: 418 DDDEGGGLALNARSRAILMQKLDRSGTASSIAGSLGTSAAS-TGLAVPTAPILGAAPVIP 476

Query: 181 -IVXXXXXXXXXXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDL 357
            IV                +S  +P     S+D IG+PSECLLLK+MFDPSIETEPDFDL
Sbjct: 477 PIVAPLISGSAPAFPGLPGASVQLPGAIP-SVDTIGVPSECLLLKNMFDPSIETEPDFDL 535

Query: 358 DIKEDVQAECSKFGLVKHIYVDKHSAGFVYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 537
           DIKEDVQ ECSKFG ++HIYVDK+SAGFVYL                             
Sbjct: 536 DIKEDVQLECSKFGNLQHIYVDKNSAGFVYL----------------------------- 566

Query: 538 XXXXXXXAMNAQRALHGRWFAGKMITASYMVPQNYEAKFPD 660
                  A++AQRALHGRWFAGKMITA++MVPQ YE KFPD
Sbjct: 567 RFENTQSAISAQRALHGRWFAGKMITATFMVPQVYETKFPD 607


>ref|XP_003536719.1| PREDICTED: RNA-binding protein 39-like [Glycine max]
          Length = 597

 Score =  206 bits (524), Expect = 7e-51
 Identities = 117/220 (53%), Positives = 136/220 (61%)
 Frame = +1

Query: 1   DDDDGGGMSLNARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGMPSTIP 180
           DDD+GGG+SLNA SRAILMQKLDRSG  SS+ GS+    +N +GL L        P+T  
Sbjct: 419 DDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSIGNSGVNNTGLNL--------PATGN 470

Query: 181 IVXXXXXXXXXXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDLD 360
           I+                    +PT T  SIDPIG+PSECL+LK+MFDP  ETEPDFDLD
Sbjct: 471 ILAAAPVGGLAG------GGLQIPTATIPSIDPIGVPSECLMLKNMFDPKDETEPDFDLD 524

Query: 361 IKEDVQAECSKFGLVKHIYVDKHSAGFVYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 540
           IKEDV+AECSKFG +KHIYVDK SAGFVYL                              
Sbjct: 525 IKEDVEAECSKFGALKHIYVDKKSAGFVYL-----------------------------R 555

Query: 541 XXXXXXAMNAQRALHGRWFAGKMITASYMVPQNYEAKFPD 660
                 A++AQ+ALHGRWFAGKMITAS+MVPQ+YE KFPD
Sbjct: 556 FEDTQSAISAQQALHGRWFAGKMITASFMVPQSYEDKFPD 595


>gb|ADE76571.1| unknown [Picea sitchensis]
          Length = 203

 Score =  205 bits (522), Expect = 1e-50
 Identities = 116/221 (52%), Positives = 134/221 (60%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1   DDDDGGGMSLNARSRAILMQKLDRSGVVSSITGSMVTPVLNGSGLPLATATVPGMPSTI- 177
           DDDDGG +SLNARSRAILMQKLDRSG+ +S  GS+    L    L L   TVPGM S + 
Sbjct: 12  DDDDGGAISLNARSRAILMQKLDRSGIATS--GSVAPVPLANPSLSLPGPTVPGMSSLVA 69

Query: 178 PIVXXXXXXXXXXXXXXXXSSFGVPTVTATSIDPIGIPSECLLLKDMFDPSIETEPDFDL 357
           P+V                S+   P V A  +DPIG+P++CLLLK+MFDP+ ETEPDFDL
Sbjct: 70  PLVPSLGPTTMSGYMGLHGSAVAAPAVAAPVMDPIGVPNDCLLLKNMFDPNNETEPDFDL 129

Query: 358 DIKEDVQAECSKFGLVKHIYVDKHSAGFVYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 537
           DIKEDVQ ECSKFG V+HI+VDKHSAG VYL                             
Sbjct: 130 DIKEDVQDECSKFGAVRHIFVDKHSAGHVYL----------------------------- 160

Query: 538 XXXXXXXAMNAQRALHGRWFAGKMITASYMVPQNYEAKFPD 660
                  A+ AQRALHGRWFAGKMITA++M    YEAKFPD
Sbjct: 161 RFDSATSAIGAQRALHGRWFAGKMITATFMPSYTYEAKFPD 201