BLASTX nr result
ID: Coptis24_contig00005138
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005138
(2122 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277920.1| PREDICTED: cyclin-T1-4 [Vitis vinifera] 164 6e-51
ref|XP_002517211.1| Cyclin-L1, putative [Ricinus communis] gi|22... 164 2e-50
emb|CAN71612.1| hypothetical protein VITISV_012971 [Vitis vinifera] 164 4e-47
ref|XP_003536540.1| PREDICTED: cyclin-T1-4-like [Glycine max] 149 1e-46
emb|CBI26220.3| unnamed protein product [Vitis vinifera] 167 1e-38
>ref|XP_002277920.1| PREDICTED: cyclin-T1-4 [Vitis vinifera]
Length = 363
Score = 164 bits (416), Expect(2) = 6e-51
Identities = 85/117 (72%), Positives = 96/117 (82%)
Frame = +2
Query: 704 MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
++ATA+LFLAAKSEET RPLN+V+RASCEI HK L F LLPVDWFEQYRERV +AEQ
Sbjct: 202 LIATASLFLAAKSEETQRPLNNVVRASCEILHKLDLTFLSYLLPVDWFEQYRERVIEAEQ 261
Query: 884 MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYTVFIFQILNYH 1054
MILTTL+FEL V+HPY PLTSVL+KLGLSQTVLVNLAL LVSEG + Q +H
Sbjct: 262 MILTTLDFELTVEHPYVPLTSVLNKLGLSQTVLVNLALHLVSEGLRSSLWLQFKPHH 318
Score = 65.1 bits (157), Expect(2) = 6e-51
Identities = 30/51 (58%), Positives = 36/51 (70%)
Frame = +1
Query: 1144 QFKPHHIXXXXXXXXXKILNFDLATHHGMWQEFQTTPSICQDVVKQLTELF 1296
QFKPHHI KILN D+A++ +WQEFQTTP+I QDV +QL ELF
Sbjct: 313 QFKPHHIAAGAAYLAAKILNLDVASYQYIWQEFQTTPAILQDVAQQLMELF 363
Score = 113 bits (282), Expect = 2e-22
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
Frame = +1
Query: 265 PTSKKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCL-TGAKRDLEIL 441
P+ K+RKFSAS+WE+ YQ+ +NAPST NS AP R + T KRD L
Sbjct: 66 PSLKRRKFSASAWEDTGRRYQQQTTYDNAPSTCNSLVPAPTRPNANAYTSTSCKRDRSKL 125
Query: 442 -DDDIVFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
DDD+VFMSR EIER SPSRKDGID+LRE +LRYSYCAFLQN
Sbjct: 126 EDDDMVFMSRDEIERCSPSRKDGIDALREMHLRYSYCAFLQN 167
>ref|XP_002517211.1| Cyclin-L1, putative [Ricinus communis] gi|223543846|gb|EEF45374.1|
Cyclin-L1, putative [Ricinus communis]
Length = 403
Score = 164 bits (414), Expect(2) = 2e-50
Identities = 83/117 (70%), Positives = 96/117 (82%)
Frame = +2
Query: 704 MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
++ATAALFLA+KSEET RPLN++LRAS EI HKQ ++ LLPVDWFEQYRERV +AEQ
Sbjct: 242 LIATAALFLASKSEETPRPLNNMLRASSEILHKQDMSLLSYLLPVDWFEQYRERVIEAEQ 301
Query: 884 MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYTVFIFQILNYH 1054
MILTTLNFELNVQHPY PLTSVL+K+G SQTVLVNLAL L+SEG + Q +H
Sbjct: 302 MILTTLNFELNVQHPYAPLTSVLNKIGFSQTVLVNLALNLISEGLRSSLWLQFKPHH 358
Score = 63.9 bits (154), Expect(2) = 2e-50
Identities = 29/51 (56%), Positives = 34/51 (66%)
Frame = +1
Query: 1144 QFKPHHIXXXXXXXXXKILNFDLATHHGMWQEFQTTPSICQDVVKQLTELF 1296
QFKPHHI + LN DLA + +WQEFQTTP+I QDV +QL ELF
Sbjct: 353 QFKPHHIAAGAAYLAARFLNLDLACYQNIWQEFQTTPAIIQDVAQQLMELF 403
Score = 92.4 bits (228), Expect = 4e-16
Identities = 54/102 (52%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Frame = +1
Query: 265 PTSKKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCL-TGAKRDLEIL 441
P+ K+RKFSA +WE+ R + + E+A S++ + R++ + T KRD L
Sbjct: 106 PSLKRRKFSAGTWEDVRREFVQPVSYESAASSAYNNLVPLTRSNAETSTSTSCKRDRSKL 165
Query: 442 -DDDIVFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
DDD VFMSR EIER SPSRKDGID+LRE++LRYSYCAFLQN
Sbjct: 166 EDDDPVFMSRDEIERHSPSRKDGIDALRESHLRYSYCAFLQN 207
>emb|CAN71612.1| hypothetical protein VITISV_012971 [Vitis vinifera]
Length = 443
Score = 164 bits (416), Expect(2) = 4e-47
Identities = 85/117 (72%), Positives = 96/117 (82%)
Frame = +2
Query: 704 MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
++ATA+LFLAAKSEET RPLN+V+RASCEI HK L F LLPVDWFEQYRERV +AEQ
Sbjct: 202 LIATASLFLAAKSEETQRPLNNVVRASCEILHKLDLTFLSYLLPVDWFEQYRERVIEAEQ 261
Query: 884 MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYTVFIFQILNYH 1054
MILTTL+FEL V+HPY PLTSVL+KLGLSQTVLVNLAL LVSEG + Q +H
Sbjct: 262 MILTTLDFELTVEHPYVPLTSVLNKLGLSQTVLVNLALHLVSEGLRSSLWLQFKPHH 318
Score = 52.4 bits (124), Expect(2) = 4e-47
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +1
Query: 1144 QFKPHHIXXXXXXXXXKILNFDLATHHGMWQEFQTTPSICQDVVKQLTE 1290
QFKPHHI KILN D+A++ +WQEFQTTP+I Q +++ E
Sbjct: 313 QFKPHHIAAGAAYLAAKILNLDVASYQYIWQEFQTTPAILQGHLERKKE 361
Score = 114 bits (286), Expect = 8e-23
Identities = 62/102 (60%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Frame = +1
Query: 265 PTSKKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCL-TGAKRDLEIL 441
P+ K+RKFSAS+WE+ +YQ+ +NAPST NS AP R + T KRD L
Sbjct: 66 PSLKRRKFSASAWEDTGRHYQQQTTYDNAPSTCNSLVPAPTRPNANAYTSTSCKRDRSKL 125
Query: 442 -DDDIVFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
DDD+VFMSR EIER SPSRKDGID+LRE +LRYSYCAFLQN
Sbjct: 126 EDDDMVFMSRDEIERCSPSRKDGIDALREMHLRYSYCAFLQN 167
>ref|XP_003536540.1| PREDICTED: cyclin-T1-4-like [Glycine max]
Length = 372
Score = 149 bits (376), Expect(2) = 1e-46
Identities = 79/117 (67%), Positives = 89/117 (76%)
Frame = +2
Query: 704 MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
++ATAALFL AKSEE R LN+VLR S EI +KQ PVDWFEQYRERV +AEQ
Sbjct: 211 LIATAALFLTAKSEEAPRHLNNVLRTSSEILYKQDFALLSYRFPVDWFEQYRERVLEAEQ 270
Query: 884 MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYTVFIFQILNYH 1054
+ILTTLNFELNVQHPY PLTSVL+KLGLS+TVLVNLAL LVSEG + Q +H
Sbjct: 271 LILTTLNFELNVQHPYVPLTSVLNKLGLSKTVLVNLALNLVSEGLRSSLWLQFKPHH 327
Score = 65.9 bits (159), Expect(2) = 1e-46
Identities = 31/51 (60%), Positives = 34/51 (66%)
Frame = +1
Query: 1144 QFKPHHIXXXXXXXXXKILNFDLATHHGMWQEFQTTPSICQDVVKQLTELF 1296
QFKPHHI K LN DLA + +WQEFQTTPSI QDV +QL ELF
Sbjct: 322 QFKPHHIAAGAAYLAAKFLNMDLAAYQNIWQEFQTTPSILQDVSQQLMELF 372
Score = 90.5 bits (223), Expect = 2e-15
Identities = 52/99 (52%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Frame = +1
Query: 274 KKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCLTGA-KRDLEILDDD 450
K+RK+SA W+ + YY +N PS N F P R+D + + KRD I +DD
Sbjct: 79 KRRKYSAPVWQESQQYYVPPMVHDNIPSAYN-FQGPPTRSDGDASTSASCKRDCSIFEDD 137
Query: 451 I-VFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
VFMSR EI+R SPSRKDGID ET+LRYSYCAFLQN
Sbjct: 138 KPVFMSRDEIDRHSPSRKDGIDVHHETHLRYSYCAFLQN 176
>emb|CBI26220.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 167 bits (423), Expect = 1e-38
Identities = 85/107 (79%), Positives = 94/107 (87%)
Frame = +2
Query: 704 MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
++ATA+LFLAAKSEET RPLN+V+RASCEI HK L F LLPVDWFEQYRERV +AEQ
Sbjct: 202 LIATASLFLAAKSEETQRPLNNVVRASCEILHKLDLTFLSYLLPVDWFEQYRERVIEAEQ 261
Query: 884 MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYT 1024
MILTTL+FEL V+HPY PLTSVL+KLGLSQTVLVNLAL LVSEG YT
Sbjct: 262 MILTTLDFELTVEHPYVPLTSVLNKLGLSQTVLVNLALHLVSEGIYT 308
Score = 113 bits (282), Expect = 2e-22
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
Frame = +1
Query: 265 PTSKKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCL-TGAKRDLEIL 441
P+ K+RKFSAS+WE+ YQ+ +NAPST NS AP R + T KRD L
Sbjct: 66 PSLKRRKFSASAWEDTGRRYQQQTTYDNAPSTCNSLVPAPTRPNANAYTSTSCKRDRSKL 125
Query: 442 -DDDIVFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
DDD+VFMSR EIER SPSRKDGID+LRE +LRYSYCAFLQN
Sbjct: 126 EDDDMVFMSRDEIERCSPSRKDGIDALREMHLRYSYCAFLQN 167