BLASTX nr result

ID: Coptis24_contig00005138 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005138
         (2122 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277920.1| PREDICTED: cyclin-T1-4 [Vitis vinifera]           164   6e-51
ref|XP_002517211.1| Cyclin-L1, putative [Ricinus communis] gi|22...   164   2e-50
emb|CAN71612.1| hypothetical protein VITISV_012971 [Vitis vinifera]   164   4e-47
ref|XP_003536540.1| PREDICTED: cyclin-T1-4-like [Glycine max]         149   1e-46
emb|CBI26220.3| unnamed protein product [Vitis vinifera]              167   1e-38

>ref|XP_002277920.1| PREDICTED: cyclin-T1-4 [Vitis vinifera]
          Length = 363

 Score =  164 bits (416), Expect(2) = 6e-51
 Identities = 85/117 (72%), Positives = 96/117 (82%)
 Frame = +2

Query: 704  MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
            ++ATA+LFLAAKSEET RPLN+V+RASCEI HK  L F   LLPVDWFEQYRERV +AEQ
Sbjct: 202  LIATASLFLAAKSEETQRPLNNVVRASCEILHKLDLTFLSYLLPVDWFEQYRERVIEAEQ 261

Query: 884  MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYTVFIFQILNYH 1054
            MILTTL+FEL V+HPY PLTSVL+KLGLSQTVLVNLAL LVSEG  +    Q   +H
Sbjct: 262  MILTTLDFELTVEHPYVPLTSVLNKLGLSQTVLVNLALHLVSEGLRSSLWLQFKPHH 318



 Score = 65.1 bits (157), Expect(2) = 6e-51
 Identities = 30/51 (58%), Positives = 36/51 (70%)
 Frame = +1

Query: 1144 QFKPHHIXXXXXXXXXKILNFDLATHHGMWQEFQTTPSICQDVVKQLTELF 1296
            QFKPHHI         KILN D+A++  +WQEFQTTP+I QDV +QL ELF
Sbjct: 313  QFKPHHIAAGAAYLAAKILNLDVASYQYIWQEFQTTPAILQDVAQQLMELF 363



 Score =  113 bits (282), Expect = 2e-22
 Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
 Frame = +1

Query: 265 PTSKKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCL-TGAKRDLEIL 441
           P+ K+RKFSAS+WE+    YQ+    +NAPST NS   AP R +      T  KRD   L
Sbjct: 66  PSLKRRKFSASAWEDTGRRYQQQTTYDNAPSTCNSLVPAPTRPNANAYTSTSCKRDRSKL 125

Query: 442 -DDDIVFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
            DDD+VFMSR EIER SPSRKDGID+LRE +LRYSYCAFLQN
Sbjct: 126 EDDDMVFMSRDEIERCSPSRKDGIDALREMHLRYSYCAFLQN 167


>ref|XP_002517211.1| Cyclin-L1, putative [Ricinus communis] gi|223543846|gb|EEF45374.1|
            Cyclin-L1, putative [Ricinus communis]
          Length = 403

 Score =  164 bits (414), Expect(2) = 2e-50
 Identities = 83/117 (70%), Positives = 96/117 (82%)
 Frame = +2

Query: 704  MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
            ++ATAALFLA+KSEET RPLN++LRAS EI HKQ ++    LLPVDWFEQYRERV +AEQ
Sbjct: 242  LIATAALFLASKSEETPRPLNNMLRASSEILHKQDMSLLSYLLPVDWFEQYRERVIEAEQ 301

Query: 884  MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYTVFIFQILNYH 1054
            MILTTLNFELNVQHPY PLTSVL+K+G SQTVLVNLAL L+SEG  +    Q   +H
Sbjct: 302  MILTTLNFELNVQHPYAPLTSVLNKIGFSQTVLVNLALNLISEGLRSSLWLQFKPHH 358



 Score = 63.9 bits (154), Expect(2) = 2e-50
 Identities = 29/51 (56%), Positives = 34/51 (66%)
 Frame = +1

Query: 1144 QFKPHHIXXXXXXXXXKILNFDLATHHGMWQEFQTTPSICQDVVKQLTELF 1296
            QFKPHHI         + LN DLA +  +WQEFQTTP+I QDV +QL ELF
Sbjct: 353  QFKPHHIAAGAAYLAARFLNLDLACYQNIWQEFQTTPAIIQDVAQQLMELF 403



 Score = 92.4 bits (228), Expect = 4e-16
 Identities = 54/102 (52%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
 Frame = +1

Query: 265 PTSKKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCL-TGAKRDLEIL 441
           P+ K+RKFSA +WE+ R  + +    E+A S++ +      R++ +    T  KRD   L
Sbjct: 106 PSLKRRKFSAGTWEDVRREFVQPVSYESAASSAYNNLVPLTRSNAETSTSTSCKRDRSKL 165

Query: 442 -DDDIVFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
            DDD VFMSR EIER SPSRKDGID+LRE++LRYSYCAFLQN
Sbjct: 166 EDDDPVFMSRDEIERHSPSRKDGIDALRESHLRYSYCAFLQN 207


>emb|CAN71612.1| hypothetical protein VITISV_012971 [Vitis vinifera]
          Length = 443

 Score =  164 bits (416), Expect(2) = 4e-47
 Identities = 85/117 (72%), Positives = 96/117 (82%)
 Frame = +2

Query: 704  MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
            ++ATA+LFLAAKSEET RPLN+V+RASCEI HK  L F   LLPVDWFEQYRERV +AEQ
Sbjct: 202  LIATASLFLAAKSEETQRPLNNVVRASCEILHKLDLTFLSYLLPVDWFEQYRERVIEAEQ 261

Query: 884  MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYTVFIFQILNYH 1054
            MILTTL+FEL V+HPY PLTSVL+KLGLSQTVLVNLAL LVSEG  +    Q   +H
Sbjct: 262  MILTTLDFELTVEHPYVPLTSVLNKLGLSQTVLVNLALHLVSEGLRSSLWLQFKPHH 318



 Score = 52.4 bits (124), Expect(2) = 4e-47
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +1

Query: 1144 QFKPHHIXXXXXXXXXKILNFDLATHHGMWQEFQTTPSICQDVVKQLTE 1290
            QFKPHHI         KILN D+A++  +WQEFQTTP+I Q  +++  E
Sbjct: 313  QFKPHHIAAGAAYLAAKILNLDVASYQYIWQEFQTTPAILQGHLERKKE 361



 Score =  114 bits (286), Expect = 8e-23
 Identities = 62/102 (60%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
 Frame = +1

Query: 265 PTSKKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCL-TGAKRDLEIL 441
           P+ K+RKFSAS+WE+   +YQ+    +NAPST NS   AP R +      T  KRD   L
Sbjct: 66  PSLKRRKFSASAWEDTGRHYQQQTTYDNAPSTCNSLVPAPTRPNANAYTSTSCKRDRSKL 125

Query: 442 -DDDIVFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
            DDD+VFMSR EIER SPSRKDGID+LRE +LRYSYCAFLQN
Sbjct: 126 EDDDMVFMSRDEIERCSPSRKDGIDALREMHLRYSYCAFLQN 167


>ref|XP_003536540.1| PREDICTED: cyclin-T1-4-like [Glycine max]
          Length = 372

 Score =  149 bits (376), Expect(2) = 1e-46
 Identities = 79/117 (67%), Positives = 89/117 (76%)
 Frame = +2

Query: 704  MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
            ++ATAALFL AKSEE  R LN+VLR S EI +KQ         PVDWFEQYRERV +AEQ
Sbjct: 211  LIATAALFLTAKSEEAPRHLNNVLRTSSEILYKQDFALLSYRFPVDWFEQYRERVLEAEQ 270

Query: 884  MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYTVFIFQILNYH 1054
            +ILTTLNFELNVQHPY PLTSVL+KLGLS+TVLVNLAL LVSEG  +    Q   +H
Sbjct: 271  LILTTLNFELNVQHPYVPLTSVLNKLGLSKTVLVNLALNLVSEGLRSSLWLQFKPHH 327



 Score = 65.9 bits (159), Expect(2) = 1e-46
 Identities = 31/51 (60%), Positives = 34/51 (66%)
 Frame = +1

Query: 1144 QFKPHHIXXXXXXXXXKILNFDLATHHGMWQEFQTTPSICQDVVKQLTELF 1296
            QFKPHHI         K LN DLA +  +WQEFQTTPSI QDV +QL ELF
Sbjct: 322  QFKPHHIAAGAAYLAAKFLNMDLAAYQNIWQEFQTTPSILQDVSQQLMELF 372



 Score = 90.5 bits (223), Expect = 2e-15
 Identities = 52/99 (52%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
 Frame = +1

Query: 274 KKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCLTGA-KRDLEILDDD 450
           K+RK+SA  W+  + YY      +N PS  N F   P R+D     + + KRD  I +DD
Sbjct: 79  KRRKYSAPVWQESQQYYVPPMVHDNIPSAYN-FQGPPTRSDGDASTSASCKRDCSIFEDD 137

Query: 451 I-VFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
             VFMSR EI+R SPSRKDGID   ET+LRYSYCAFLQN
Sbjct: 138 KPVFMSRDEIDRHSPSRKDGIDVHHETHLRYSYCAFLQN 176


>emb|CBI26220.3| unnamed protein product [Vitis vinifera]
          Length = 315

 Score =  167 bits (423), Expect = 1e-38
 Identities = 85/107 (79%), Positives = 94/107 (87%)
 Frame = +2

Query: 704  MVATAALFLAAKSEETARPLNDVLRASCEICHKQGLNFFPSLLPVDWFEQYRERVTDAEQ 883
            ++ATA+LFLAAKSEET RPLN+V+RASCEI HK  L F   LLPVDWFEQYRERV +AEQ
Sbjct: 202  LIATASLFLAAKSEETQRPLNNVVRASCEILHKLDLTFLSYLLPVDWFEQYRERVIEAEQ 261

Query: 884  MILTTLNFELNVQHPYDPLTSVLSKLGLSQTVLVNLALCLVSEGXYT 1024
            MILTTL+FEL V+HPY PLTSVL+KLGLSQTVLVNLAL LVSEG YT
Sbjct: 262  MILTTLDFELTVEHPYVPLTSVLNKLGLSQTVLVNLALHLVSEGIYT 308



 Score =  113 bits (282), Expect = 2e-22
 Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
 Frame = +1

Query: 265 PTSKKRKFSASSWENGRGYYQEYHRRENAPSTSNSFYSAPIRADQKLCL-TGAKRDLEIL 441
           P+ K+RKFSAS+WE+    YQ+    +NAPST NS   AP R +      T  KRD   L
Sbjct: 66  PSLKRRKFSASAWEDTGRRYQQQTTYDNAPSTCNSLVPAPTRPNANAYTSTSCKRDRSKL 125

Query: 442 -DDDIVFMSRIEIERLSPSRKDGIDSLRETYLRYSYCAFLQN 564
            DDD+VFMSR EIER SPSRKDGID+LRE +LRYSYCAFLQN
Sbjct: 126 EDDDMVFMSRDEIERCSPSRKDGIDALREMHLRYSYCAFLQN 167


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