BLASTX nr result
ID: Coptis24_contig00005016
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00005016
(1150 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 269 1e-69
ref|XP_002313876.1| predicted protein [Populus trichocarpa] gi|2... 249 1e-63
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [... 244 2e-62
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 229 1e-57
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc... 227 5e-57
>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
gi|296090438|emb|CBI40257.3| unnamed protein product
[Vitis vinifera]
Length = 476
Score = 269 bits (687), Expect = 1e-69
Identities = 133/186 (71%), Positives = 149/186 (80%), Gaps = 2/186 (1%)
Frame = -1
Query: 1150 PRRSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCP 971
PRR GLISAPLGKVV+D+GK+ERITIVD+ Q S QHA+TEYRVI+SS HGYTWLEL P
Sbjct: 291 PRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSP 350
Query: 970 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKT--ERLPKLKMVPFGL 797
LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHR WK + S +EK E L K PFGL
Sbjct: 351 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGL 410
Query: 796 DLESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXLVAPLPLHMQRS 617
DLESGSIL+K+PHLHLHCK+MVLP+VSLALQ++Q+S + VAPLP HMQRS
Sbjct: 411 DLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQRS 470
Query: 616 WDALRS 599
WD L S
Sbjct: 471 WDILNS 476
>ref|XP_002313876.1| predicted protein [Populus trichocarpa] gi|222850284|gb|EEE87831.1|
predicted protein [Populus trichocarpa]
Length = 324
Score = 249 bits (635), Expect = 1e-63
Identities = 123/184 (66%), Positives = 145/184 (78%), Gaps = 2/184 (1%)
Frame = -1
Query: 1150 PRRSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCP 971
PRR GLISAPLGKVV+DNGK++RIT+V+++QN S QHAVT+YRVIESSH G+TWLEL P
Sbjct: 142 PRRPKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESSH-GFTWLELSP 200
Query: 970 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKTERLPKL--KMVPFGL 797
LTGRKHQLRVHCAEVLGTPIVGDYKY WQAHRNWK + S +E L K++PF L
Sbjct: 201 LTGRKHQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPFAL 260
Query: 796 DLESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXLVAPLPLHMQRS 617
DL+SGSI EK P LHLHCK+MVLPDVS ALQ +Q+S+D+ APLP +M++S
Sbjct: 261 DLDSGSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKS 320
Query: 616 WDAL 605
WD L
Sbjct: 321 WDIL 324
>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 536
Score = 244 bits (624), Expect = 2e-62
Identities = 121/186 (65%), Positives = 145/186 (77%), Gaps = 2/186 (1%)
Frame = -1
Query: 1150 PRRSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCP 971
PRR G+ISAPLGKVV+D+GK++RIT+V++ ++ S QHAVT+YRV+ESSH GY WLEL P
Sbjct: 352 PRRQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESSH-GYAWLELSP 410
Query: 970 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKTERLPKL--KMVPFGL 797
+TGRKHQLRVHCAEVLGTPIVGDYKYGWQ HR WK +P LEK L K++PFG+
Sbjct: 411 ITGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCKKILPFGI 470
Query: 796 DLESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXLVAPLPLHMQRS 617
DLESGSI EK P LHLHCK+MVLPDVS AL+ +Q S+++ L APLP +MQRS
Sbjct: 471 DLESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQRS 530
Query: 616 WDALRS 599
WD L S
Sbjct: 531 WDILNS 536
>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
sativus]
Length = 466
Score = 229 bits (583), Expect = 1e-57
Identities = 111/184 (60%), Positives = 137/184 (74%)
Frame = -1
Query: 1150 PRRSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCP 971
PRRS GLI+APLGK+VLD+G++E+I ++D+ + Q A+T+Y+VI+S HHGYTWLELCP
Sbjct: 289 PRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVIKS-HHGYTWLELCP 347
Query: 970 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKTERLPKLKMVPFGLDL 791
LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+NWKP ++ + K + +PFGLD
Sbjct: 348 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNF---HKNQGKKQFLPFGLDF 404
Query: 790 ESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXLVAPLPLHMQRSWD 611
ESGSI E P LHLHCK++ LPDVS AL + S D L APLP +MQ+SWD
Sbjct: 405 ESGSIAENNPRLHLHCKQLTLPDVSFALHN--DSLDRDCSRLECLELDAPLPSYMQKSWD 462
Query: 610 ALRS 599
+ S
Sbjct: 463 IINS 466
>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 227 bits (578), Expect = 5e-57
Identities = 110/182 (60%), Positives = 136/182 (74%)
Frame = -1
Query: 1150 PRRSSGLISAPLGKVVLDNGKAERITIVDDTQNQSCQHAVTEYRVIESSHHGYTWLELCP 971
PRRS GLI+APLGK+VLD+G++E+I ++D+ + Q A+T+Y+VI+S HHGYTWLELCP
Sbjct: 294 PRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQYKVIKS-HHGYTWLELCP 352
Query: 970 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPMPGSYLEKTERLPKLKMVPFGLDL 791
LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH+NWKP ++ + K + +PFGLD
Sbjct: 353 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPFCSNF---HKNQGKKQFLPFGLDF 409
Query: 790 ESGSILEKRPHLHLHCKRMVLPDVSLALQHMQISTDHXXXXXXXXXLVAPLPLHMQRSWD 611
ESGSI E P LHLHCK++ LPDVS AL + S D L APLP +MQ+SWD
Sbjct: 410 ESGSIAENSPRLHLHCKQLTLPDVSFALHN--DSLDRDCSRLECLELDAPLPSYMQKSWD 467
Query: 610 AL 605
+
Sbjct: 468 II 469