BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00005004
         (1463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...   154   7e-35
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...   147   7e-33
ref|XP_002316992.1| predicted protein [Populus trichocarpa] gi|2...   146   1e-32
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...   132   2e-28
ref|XP_002322524.1| predicted protein [Populus trichocarpa] gi|2...   129   2e-27

>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
            gi|222861279|gb|EEE98821.1| f-box family protein [Populus
            trichocarpa]
          Length = 422

 Score =  154 bits (388), Expect = 7e-35
 Identities = 121/388 (31%), Positives = 181/388 (46%), Gaps = 33/388 (8%)
 Frame = +1

Query: 124  PDEISISILSWLHIRYLMRCRCVSRNWRLLISDPIFVDMHLNNQRLLQLNDMVDTDLVVI 303
            P EI+  ILS L I  L++ +CV R WR L+ DP  VD++L+           DTD   +
Sbjct: 29   PREIAHDILSRLPITSLVQFKCVCRAWRALVQDPQLVDLYLSCSTQ-------DTDHPCL 81

Query: 304  VRETFLPV--NFYMLENVGCTNES--VKPFPVP-PSHLTKCKVVNSCNGLLCLRGITMLN 468
            +     P+  N Y ++      E   VK  P P  S + + +VV SCNGLLCL   ++ N
Sbjct: 82   ILHCDFPIRNNLYFVDFAAHEEEKEKVKRIPAPFSSMMPEFEVVGSCNGLLCLSD-SLYN 140

Query: 469  QLIYIWNPFTGEILDIPLSPDLMEVRIFC-FGYDSTSNVYKVVVISY-----PGIPLLDD 630
              +YI+NPFTG   ++P S    +  +   FG++  +  YKV+ I Y      G P    
Sbjct: 141  DSLYIYNPFTGCYKELPKSLQYPDQEVVSGFGFNPKTKEYKVIRIVYYRNGHGGYPRSRR 200

Query: 631  DTEFLVVAEVWTLGSGSWRKIEKVPFLPVNQQFS--MEGSLYWKSYESYESDVVGIGSFH 804
                L   ++ TLG   WR + KV +  V +     + G L+W S          + SF 
Sbjct: 201  IIYPLSEVQILTLGCPEWRSLGKVSYRLVRRASGALVNGRLHWISRPCRNKPARRLVSFD 260

Query: 805  VRTEEFQFVSLPPSFNSVLNTGYVDIGALGGCIALVDYYASPGHAEIWIMKHLGVQESWT 984
            +  E+F+ VS P      LN     +  L GC++    Y + G  EIW+MK   V+ESW 
Sbjct: 261  LTDEQFREVSKPDCGG--LNRCNYHLVVLRGCLSAA-VYCNYGRLEIWVMKEYNVKESWV 317

Query: 985  KQYVL--------------------LMEDFKYINLLCLLKSGEILFLYNGAKLVSYDPRN 1104
            K+Y +                       + + +  LC+LK+GEIL  Y    LVSYDP+N
Sbjct: 318  KEYNIGAYMPKGLKQNQDRQLKIWKNSSNGRVVGALCVLKNGEILLEYKNRVLVSYDPKN 377

Query: 1105 GQIREVGVSSVSHNADYLIERFVFVGTL 1188
            G+ +++ +      A    +  V VG+L
Sbjct: 378  GKFKDIEL----QGAPNWFQTVVHVGSL 401


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
            gi|222843314|gb|EEE80861.1| f-box family protein [Populus
            trichocarpa]
          Length = 408

 Score =  147 bits (371), Expect = 7e-33
 Identities = 121/368 (32%), Positives = 178/368 (48%), Gaps = 35/368 (9%)
 Frame = +1

Query: 124  PDEISISILSWLHIRYLMRCRCVSRNWRLLISDPIFVDMHLNNQRLLQLNDMVDTDLVVI 303
            P EI+  ILS L I  L++ +CV R WR +  DP  V+++L+           +TD  VI
Sbjct: 29   PREIAQDILSRLPITSLVKFKCVCRAWRAMALDPEVVNLYLSCSTQ-------ETDPCVI 81

Query: 304  VRETFLPV--NFYMLENVGCTNES--VKPFPVP-PSHLTKCKVVNSCNGLLCLRGITMLN 468
            +   F P+  N Y ++      E   VK    P  S + + +VV SCNGLLCL   ++ N
Sbjct: 82   LHCDF-PIRNNLYFVDFAAHEEEKEKVKRIRAPFSSMMPEFEVVGSCNGLLCLSD-SLFN 139

Query: 469  QLIYIWNPFTGEILDIPLS---PDLMEVRIFCFGYDSTSNVYKVVVISY-----PGIPLL 624
              +YI+NPFTG   ++P S   PD  EV +F FG++  +N YKV+ I Y        P  
Sbjct: 140  DSLYIYNPFTGRYKELPKSLQYPD-QEV-VFGFGFNPKTNEYKVIRIVYYRNGHGRYPRS 197

Query: 625  DDDTEFLVVAEVWTLGSGSWRKIEKVPFLPVNQ--QFSMEGSLYWKSYESYESDVVGIGS 798
                  L   ++ TLG   WR + KV +  V +  +  + G L+W S          + S
Sbjct: 198  RRIIYPLSQVQILTLGCPGWRSLGKVSYRLVRRASETLVNGRLHWVSRPCRNKPARRLVS 257

Query: 799  FHVRTEEFQFVSLPPSFNSVLNTGYVDIGALGGCIALVDYYASPGHAEIWIMKHLGVQES 978
            F +  E+F+ V  P      LN     +  L GC++ V  Y + G  EIW+MK   V+ES
Sbjct: 258  FDLTDEQFREVPKPDCGG--LNRCDYHLAVLRGCLS-VAVYCNYGRLEIWVMKEYNVKES 314

Query: 979  WTKQYVL-----------LMEDFKY---------INLLCLLKSGEILFLYNGAKLVSYDP 1098
            W K+Y +           L+   K          +  LC+LK+GEIL  Y    LVSYDP
Sbjct: 315  WVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLKNGEILLEYKNRALVSYDP 374

Query: 1099 RNGQIREV 1122
            + G+ +++
Sbjct: 375  KKGKFKDI 382


>ref|XP_002316992.1| predicted protein [Populus trichocarpa] gi|222860057|gb|EEE97604.1|
            predicted protein [Populus trichocarpa]
          Length = 411

 Score =  146 bits (369), Expect = 1e-32
 Identities = 111/354 (31%), Positives = 177/354 (50%), Gaps = 22/354 (6%)
 Frame = +1

Query: 124  PDEISISILSWLHIRYLMRCRCVSRNWRLLISDPIFVDMHLNNQRLLQL--------NDM 279
            P+ + I ILS L IR L+ C+ V + W  L+SDP FV +HL       L         + 
Sbjct: 40   PNALIIDILSRLPIRPLLNCKSVCKTWLHLMSDPSFVRLHLERSPTTLLIQKTPFERKES 99

Query: 280  VDTDLVVIVRETFLPVNFYMLENVGCTNESVKPFPVPPSHLTKCKVVNSCNGLLCLRGIT 459
             +  LV IV E  +   FY+        E ++ FP      T  +++NSCNGLLCL   +
Sbjct: 100  TEMLLVEIVEED-ISKPFYI--------EIIRLFPTKNFPDTDVRILNSCNGLLCLYEDS 150

Query: 460  --MLNQLIYIWNPFTGEILDIP-LSPDLMEVRIFCFGYDSTSNVYKVVVISYPGIPLLDD 630
                + ++++ NP  GE +DIP ++ D        FG+ S SN YKV+   YP      D
Sbjct: 151  GDKSDMMVHVCNPVLGEYIDIPVVNTDKKFEHHLAFGFSSVSNQYKVLQTFYPE----KD 206

Query: 631  DTEFLVVAEVWTLGSGSWRKIEKVPF--LPVNQQFSMEGSLYWKSYESYESDVVGIGSFH 804
             T    +AE++T+G+G WR I    F    ++    +  S++W  Y S  + +  + +F 
Sbjct: 207  LTAAPCLAEIYTVGTGQWRSIGNASFRLQSLDANAFLHDSIHWIEYRS--NSIGFVSAFD 264

Query: 805  VRTEEFQFVSLPPSFNSVLNTGY-----VDIGALGGCIALVDYYASPGHA-EIWIMKHLG 966
              +E+F+ V+LPP+  S ++ G        +G + GC+ + +         EIW+M+  G
Sbjct: 265  FVSEQFKLVALPPA--SQIHDGMGRCYPSSVGVIKGCLFMTNGVCIENEKFEIWVMEEYG 322

Query: 967  VQESWTKQYVLL-MEDFKYINL--LCLLKSGEILFLYNGAKLVSYDPRNGQIRE 1119
            ++ESWTK++VL  +E   Y++   L  L SGEIL   +   +  Y P+  +I E
Sbjct: 323  IKESWTKKFVLSNLEVQHYVSYQPLYFLSSGEILICEDDESIGVYVPKLERIHE 376


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
            gi|147785390|emb|CAN68678.1| hypothetical protein
            VITISV_041941 [Vitis vinifera]
          Length = 409

 Score =  132 bits (333), Expect = 2e-28
 Identities = 116/387 (29%), Positives = 182/387 (47%), Gaps = 32/387 (8%)
 Frame = +1

Query: 124  PDEISISILSWLHIRYLMRCRCVSRNWRLLISDPIFVDMHLNNQRLLQLNDMVDTDLVVI 303
            P +I + ILS L +  L++ R V R WRL+  D +    HL   R  Q N  +       
Sbjct: 31   PRDIILDILSRLPVTSLVQFRFVCRGWRLMAQDSLLASKHLC--RTAQYNPCLILHCDYP 88

Query: 304  VRETFLPVNFYMLENVGCTNESVKPFPVPP-SHLTKCKVVNSCNGLLCLRGITMLNQLIY 480
            +R     ++F  +       + V+   +P  + + + +VV SCNGLLCL   ++    +Y
Sbjct: 89   IRNQ---ISFVDISAESRDKDMVRKLTIPFWASMPEFEVVGSCNGLLCLAD-SLFKDAVY 144

Query: 481  IWNPFTGEILDIPLS---PDLMEVRIFCFGYDSTSNVYKVVVI-----SYPGIPLLDDDT 636
            + NPFT +   +P S   PD  EV +F FGY   + VYKVV +      Y G       T
Sbjct: 145  VHNPFTRDFKQLPKSLQYPD-QEV-VFGFGYHPMTEVYKVVKVVYYRNGYGGFSRFRRIT 202

Query: 637  EFLVVAEVWTLGSGSWRKIEKVPFLPVN--QQFSMEGSLYWKSY-ESYESDVVGIGSFHV 807
                  +V TLGS +WR + KV +       +  + G L+W +    Y +    I SF +
Sbjct: 203  CSQSEVQVLTLGSPTWRSLGKVSYQLDRWPSEALVNGRLHWVTRPRRYVTRF--IVSFDL 260

Query: 808  RTEEFQFVSLPPSFNSVLNTGYVDIGALGGCIALVDYYASPGHAEIWIMKHLGVQESWTK 987
              E+F+ +  P      L+     +  LGGC++    + S G  E+W+MK   V+ESW K
Sbjct: 261  ADEQFREIPKPDCGG--LSRCNYHLLVLGGCLSAA-VHRSNGKLEVWVMKEYDVKESWIK 317

Query: 988  QYVL-------LMEDF-------------KYINLLCLLKSGEILFLYNGAKLVSYDPRNG 1107
            ++ +       L +D              + + LLCLLK+GEIL  Y G  LVSY+P  G
Sbjct: 318  EFNIGAHLPKGLKQDVNRPHRIWRNAPKGRGVRLLCLLKNGEILLEYKGRVLVSYNPERG 377

Query: 1108 QIREVGVSSVSHNADYLIERFVFVGTL 1188
            + +++ +  + +      + FV VG+L
Sbjct: 378  KFKDLTLKGLPN----WFQTFVHVGSL 400


>ref|XP_002322524.1| predicted protein [Populus trichocarpa] gi|222867154|gb|EEF04285.1|
            predicted protein [Populus trichocarpa]
          Length = 430

 Score =  129 bits (324), Expect = 2e-27
 Identities = 108/403 (26%), Positives = 196/403 (48%), Gaps = 44/403 (10%)
 Frame = +1

Query: 124  PDEISISILSWLHIRYLMRCRCVSRNWRLLISDPIFVDMHLNNQRLLQLNDMVDTDLVVI 303
            P+++   ILS+L ++ L+  RCVSR W  LI    F+ +HL N     ++D     L +I
Sbjct: 32   PEDVIAHILSYLPVKSLLLFRCVSRLWCSLIESEYFIKLHLRN----FVHDSSGAKLSLI 87

Query: 304  VRET-FLPVNFYMLENVGCTNESVKPFPVPPSHLTKCKVVNSCNGLLCL----------- 447
            +++T F     + + +VG  NE V+    P  + T  +++ SCNGLLC+           
Sbjct: 88   LQDTCFSTPKIFSVTHVGSQNECVE-LRAPFGYRT--RILGSCNGLLCVCQSDMEDSVEY 144

Query: 448  --RGITMLNQLIYIWNPFTGEILDIPLSP-------------DLMEVRIFCFGYDSTSNV 582
               G   ++  I +WNP T ++  +P +P             D +E + + FG+DS ++ 
Sbjct: 145  KRSGKYYVSPKIALWNPLTKKLHILPFAPIQVTTWSPLYGVLDSLEFQ-YAFGHDSFNDD 203

Query: 583  YKV--VVISYPGIPLLDDDTEFLVVAEVWTLGSGSWRKIEK---VPFLPVNQQFSMEGSL 747
            Y+V  +V   PG+P   D  +F++ A V++L + SWR+I     + ++   +   +  + 
Sbjct: 204  YRVLRIVQQNPGMP---DPDKFILKAMVYSLKANSWREIVAPGYLHYIVSKESVLVRDAF 260

Query: 748  YWKSYESYESDVVGIGSFHVRTEEFQFVSLPPSFNSVLNTGYVDIGALGGCIALVDYYAS 927
            +W   + +  D+V   +F ++ EE+  V L P+  +  +  Y ++G L  C++L    +S
Sbjct: 261  HWLLIQGHGLDIV---AFDIQREEYCTVPL-PNLETKSSLYYRNLGVLRQCLSLAS--SS 314

Query: 928  PGHAEIWIMKHLGVQESWTKQYVLLMEDFKYINL-------LCLLKSGE-----ILFLYN 1071
              + EIW+MK  G+++SW K ++L        +        L  +K        +L    
Sbjct: 315  VHNVEIWVMKEYGMKDSWVKLFLLEKSSSLCYSTVPYDLAPLAYVKDNNDDHKVLLKGLP 374

Query: 1072 GAKLVSYDPRNGQIREVGVSSVSHNADYLIERFVFVGTLVSPM 1200
               L+ YD +      V +    H A +L + ++FVG+LVSP+
Sbjct: 375  DQSLIWYDLKLKTYEHVQI----HGAPWLYQPYIFVGSLVSPL 413