BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004995
         (1564 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22501.3| unnamed protein product [Vitis vinifera]              431   e-118
ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mi...   431   e-118
ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putativ...   429   e-117
ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group] g...   418   e-114
ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arab...   418   e-114

>emb|CBI22501.3| unnamed protein product [Vitis vinifera]
          Length = 424

 Score =  431 bits (1109), Expect = e-118
 Identities = 223/355 (62%), Positives = 258/355 (72%)
 Frame = -1

Query: 1492 RYRGKHDKPKPWDDESIDHWKVEKFDPSWNESGLLVTSSFATLFPAYREVYLQEVSPIVK 1313
            +++GKHDKPKPWDD SIDHWKV+KFDPSWNE G+L  SSF+TLFP YRE YLQE  P V+
Sbjct: 55   KHKGKHDKPKPWDDPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPTVR 114

Query: 1312 AALKPYGISFDLNMVEGTMTVSTTLKTRDPYIIVKAKELIRLLSRSVPAPQAIKILDDEM 1133
             ALK +G+  +LN+VEG MTVSTT KTRDPYII+KA++LI+LLSRSVPAPQAIKIL+DEM
Sbjct: 115  GALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQAIKILNDEM 174

Query: 1132 QCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNCYVLVQGNTVAAMGSFKGLK 953
            QCDII+IG LVR+KERF+KRRQ L+G NSSTLKA+EILT CY+LVQGNTVAAMGSFKGLK
Sbjct: 175  QCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 234

Query: 952  QVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWDRFLPXXXXXXXXXXKAISI 773
            QVRRVVEDCIQNK+HP+ HIK +M+KREL   P L  ENWDRFLP          K  S 
Sbjct: 235  QVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNVKQKKVKSK 294

Query: 772  EKKXXXXXXXXXXPSKIDLQLESGEYFLNDXXXXXXXXXXXXXXXXXXXXENKRKRDAAF 593
            EKK          PSK+DLQLESGEYFL+D                    ENKRKR+AAF
Sbjct: 295  EKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAENKRKREAAF 354

Query: 592  LPPEEHLGLNSSKFGDGKNDVTDIVMSXXXXXXXXXXXXAVENVNAEDYIAAPAE 428
            +PP E +  + SK  D KNDV  + MS            ++ENVN E YIAA  E
Sbjct: 355  VPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAASGE 409


>ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis vinifera]
          Length = 386

 Score =  431 bits (1109), Expect = e-118
 Identities = 223/355 (62%), Positives = 258/355 (72%)
 Frame = -1

Query: 1492 RYRGKHDKPKPWDDESIDHWKVEKFDPSWNESGLLVTSSFATLFPAYREVYLQEVSPIVK 1313
            +++GKHDKPKPWDD SIDHWKV+KFDPSWNE G+L  SSF+TLFP YRE YLQE  P V+
Sbjct: 17   KHKGKHDKPKPWDDPSIDHWKVDKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPTVR 76

Query: 1312 AALKPYGISFDLNMVEGTMTVSTTLKTRDPYIIVKAKELIRLLSRSVPAPQAIKILDDEM 1133
             ALK +G+  +LN+VEG MTVSTT KTRDPYII+KA++LI+LLSRSVPAPQAIKIL+DEM
Sbjct: 77   GALKEFGVKSELNLVEGCMTVSTTRKTRDPYIIMKARDLIKLLSRSVPAPQAIKILNDEM 136

Query: 1132 QCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNCYVLVQGNTVAAMGSFKGLK 953
            QCDII+IG LVR+KERF+KRRQ L+G NSSTLKA+EILT CY+LVQGNTVAAMGSFKGLK
Sbjct: 137  QCDIIKIGSLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTVAAMGSFKGLK 196

Query: 952  QVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWDRFLPXXXXXXXXXXKAISI 773
            QVRRVVEDCIQNK+HP+ HIK +M+KREL   P L  ENWDRFLP          K  S 
Sbjct: 197  QVRRVVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLPKFKKKNVKQKKVKSK 256

Query: 772  EKKXXXXXXXXXXPSKIDLQLESGEYFLNDXXXXXXXXXXXXXXXXXXXXENKRKRDAAF 593
            EKK          PSK+DLQLESGEYFL+D                    ENKRKR+AAF
Sbjct: 257  EKKPYTPFPPPQPPSKVDLQLESGEYFLSDQKKFAKKWQQKLEKQAEKTAENKRKREAAF 316

Query: 592  LPPEEHLGLNSSKFGDGKNDVTDIVMSXXXXXXXXXXXXAVENVNAEDYIAAPAE 428
            +PP E +  + SK  D KNDV  + MS            ++ENVN E YIAA  E
Sbjct: 317  VPPMEPMVQDPSKSADDKNDVAAMAMSLKKKAKEFGKQKSLENVNPETYIAASGE 371


>ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
            gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly
            protein mis3, putative [Ricinus communis]
          Length = 377

 Score =  429 bits (1103), Expect = e-117
 Identities = 225/365 (61%), Positives = 264/365 (72%), Gaps = 2/365 (0%)
 Frame = -1

Query: 1516 MEGVVRPPR-YRGKHDKPKPWD-DESIDHWKVEKFDPSWNESGLLVTSSFATLFPAYREV 1343
            MEG +   + ++GKHDKPKPWD D +ID WK+EKFDPSWNE G+L  SSF+TLFP YRE 
Sbjct: 1    MEGEIETKKKHKGKHDKPKPWDEDPNIDRWKIEKFDPSWNEGGMLEVSSFSTLFPQYREK 60

Query: 1342 YLQEVSPIVKAALKPYGISFDLNMVEGTMTVSTTLKTRDPYIIVKAKELIRLLSRSVPAP 1163
            YLQEV P+VK+A+K YG++ +LN+VEG+MTVSTT KTRDPYIIVKA++LI+LLSRSVPAP
Sbjct: 61   YLQEVWPMVKSAIKEYGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAP 120

Query: 1162 QAIKILDDEMQCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNCYVLVQGNTV 983
            QAIKIL DEMQCDII+IG LVR KERF+KRRQ L+G NSSTLKA+EILT CY+LVQGNTV
Sbjct: 121  QAIKILHDEMQCDIIKIGNLVRKKERFVKRRQHLVGPNSSTLKALEILTGCYILVQGNTV 180

Query: 982  AAMGSFKGLKQVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWDRFLPXXXXX 803
            AAMGSFKGLKQVR++VEDCIQNKLHP+ HIK +M+K+EL K P L  ENWDRFLP     
Sbjct: 181  AAMGSFKGLKQVRKIVEDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLPKFKKK 240

Query: 802  XXXXXKAISIEKKXXXXXXXXXXPSKIDLQLESGEYFLNDXXXXXXXXXXXXXXXXXXXX 623
                 K    EKK          PSK+D +LESGEYFLN+                    
Sbjct: 241  NVKHNKVKRKEKKPYTPFPPEQQPSKVDRELESGEYFLNNQKKQAKKWQEKQERQAEKTA 300

Query: 622  ENKRKRDAAFLPPEEHLGLNSSKFGDGKNDVTDIVMSXXXXXXXXXXXXAVENVNAEDYI 443
            ENKRKRD AF+PPEEH   ++ K  D  NDV  I +S            AVEN+NAE+YI
Sbjct: 301  ENKRKRDTAFVPPEEHRDQDAGKSEDKNNDVAAIALSIKKKAKDFGKKNAVENINAEEYI 360

Query: 442  AAPAE 428
            AA  E
Sbjct: 361  AASGE 365


>ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group] gi|31432429|gb|AAP54059.1|
            Ribosomal RNA assembly protein mis3, putative, expressed
            [Oryza sativa Japonica Group]
            gi|113639346|dbj|BAF26651.1| Os10g0452800 [Oryza sativa
            Japonica Group] gi|215687236|dbj|BAG91801.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|222612935|gb|EEE51067.1| hypothetical protein
            OsJ_31745 [Oryza sativa Japonica Group]
          Length = 395

 Score =  418 bits (1075), Expect = e-114
 Identities = 217/361 (60%), Positives = 261/361 (72%), Gaps = 3/361 (0%)
 Frame = -1

Query: 1510 GVVRPPRYRGKHDKPKPWDDE-SIDHWKVEKFDPSWNESGLLVTSSFATLFPAYREVYLQ 1334
            G  +PPR++GKHDKPKPWDD+ +IDHWK+EKFDPSWNE G+L  SSF+TLFP YRE YLQ
Sbjct: 19   GRKKPPRHKGKHDKPKPWDDDPNIDHWKIEKFDPSWNEGGMLEVSSFSTLFPQYREKYLQ 78

Query: 1333 EVSPIVKAALKPYGISFDLNMVEGTMTVSTTLKTRDPYIIVKAKELIRLLSRSVPAPQAI 1154
            E  PIVK ALK +G++ +LN+VEG+MTVSTT KTRDPYIIVKAKELI+LLSRSVPAPQAI
Sbjct: 79   EAWPIVKGALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKAKELIKLLSRSVPAPQAI 138

Query: 1153 KILDDEMQCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNCYVLVQGNTVAAM 974
            KIL+DEM CDII+IG ++R+KERF+KRR+ LLG N STLKAIEILT CY+LVQGNTVAAM
Sbjct: 139  KILNDEMSCDIIKIGSIIRNKERFVKRRERLLGPNLSTLKAIEILTGCYILVQGNTVAAM 198

Query: 973  GSFKGLKQVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWDRFLPXXXXXXXX 794
            GS+KGLKQVRRVVEDCI+N  HP+ HIKE+++KREL K P LA E+WDRFLP        
Sbjct: 199  GSWKGLKQVRRVVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLPKFKKKNVK 258

Query: 793  XXKAISIEKKXXXXXXXXXXPSKIDLQLESGEYFLNDXXXXXXXXXXXXXXXXXXXXENK 614
              K I+ EKK          PSKIDL+LESGEYF++D                    ENK
Sbjct: 259  QKKPITKEKKPYTPFPPPQQPSKIDLELESGEYFMSDKKKSAKKWQEKLEKQSEKAEENK 318

Query: 613  RKRDAAFLPPEEHLG--LNSSKFGDGKNDVTDIVMSXXXXXXXXXXXXAVENVNAEDYIA 440
            RKR+AAF+PP+E       S+K     +++ D+  S            A ENV  E Y+A
Sbjct: 319  RKREAAFVPPKEDTATPYESAKSTSNNDEIADMAKSLKKKAKEFRKSEAQENVRLESYVA 378

Query: 439  A 437
            +
Sbjct: 379  S 379


>ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
            lyrata] gi|297317162|gb|EFH47584.1| hypothetical protein
            ARALYDRAFT_487679 [Arabidopsis lyrata subsp. lyrata]
          Length = 391

 Score =  418 bits (1075), Expect = e-114
 Identities = 220/376 (58%), Positives = 272/376 (72%), Gaps = 6/376 (1%)
 Frame = -1

Query: 1540 MEDVKNMDME--GVVRPPRYRGKHDKPKPWDDE-SIDHWKVEKFDPSWNESGLLVTSSFA 1370
            M +V+ ++ E   + +  R +GKHDKPKPWDD+ +ID W +EKFDP+WN +G+L TSSF+
Sbjct: 1    MAEVEELEHEEQNIEKRVRQKGKHDKPKPWDDDPNIDRWTIEKFDPAWNPTGMLETSSFS 60

Query: 1369 TLFPAYREVYLQEVSPIVKAALKPYGISFDLNMVEGTMTVSTTLKTRDPYIIVKAKELIR 1190
            TLFP YRE YLQE  P V++ALK YG++  LN+VEG+MTVSTT KTRDPYIIVKA++LI+
Sbjct: 61   TLFPQYREKYLQESWPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIK 120

Query: 1189 LLSRSVPAPQAIKILDDEMQCDIIRIGGLVRSKERFIKRRQLLLGSNSSTLKAIEILTNC 1010
            LLSRSVPAPQAIKIL+DEMQCDII+IG LVR+K+RF+KRRQ L+G NSSTLKA+EILTNC
Sbjct: 121  LLSRSVPAPQAIKILEDEMQCDIIKIGSLVRNKQRFVKRRQRLVGPNSSTLKALEILTNC 180

Query: 1009 YVLVQGNTVAAMGSFKGLKQVRRVVEDCIQNKLHPLRHIKEMMVKRELGKRPELATENWD 830
            Y+LVQG+TVAAMG FKGLKQ+RR+VEDC+QNK+HP+ HIK +M+K+EL K P LA E+WD
Sbjct: 181  YILVQGSTVAAMGPFKGLKQLRRIVEDCVQNKMHPVYHIKTLMMKKELEKDPALANESWD 240

Query: 829  RFLPXXXXXXXXXXKAISIEKKXXXXXXXXXXPSKIDLQLESGEYFLNDXXXXXXXXXXX 650
            RFLP          K  S EKK          PSKID+QLESGEYF++D           
Sbjct: 241  RFLPTFRKKNVKQKKPKSKEKKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWLEK 300

Query: 649  XXXXXXXXXENKRKRDAAFLPPEEHLGLNS--SKFGDGKNDVTDIVMSXXXXXXXXXXXX 476
                     ENKRKRDA+FLPPEE +  NS  +   DGKND+T++  S            
Sbjct: 301  QEKQTEKSTENKRKRDASFLPPEEPMNNNSKANNSEDGKNDITELTQSLKSKTKELKKQK 360

Query: 475  AV-ENVNAEDYIAAPA 431
               E VNAE+YIA P+
Sbjct: 361  KTHERVNAEEYIAGPS 376