BLASTX nr result
ID: Coptis24_contig00004980
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004980 (277 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002273010.1| PREDICTED: 60S ribosome subunit biogenesis p... 165 4e-39 ref|XP_002279785.1| PREDICTED: 60S ribosome subunit biogenesis p... 164 5e-39 ref|XP_004159812.1| PREDICTED: 60S ribosome subunit biogenesis p... 157 8e-37 ref|XP_004134205.1| PREDICTED: 60S ribosome subunit biogenesis p... 157 8e-37 gb|ADE76484.1| unknown [Picea sitchensis] 157 8e-37 >ref|XP_002273010.1| PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Vitis vinifera] Length = 187 Score = 165 bits (417), Expect = 4e-39 Identities = 78/91 (85%), Positives = 84/91 (92%) Frame = +3 Query: 3 TNISREKLISLGTCIGKFTKGGKFHLTIQCLNLLADNAKHKVWLKPSSEMSFLYGNHVLK 182 TNI R +L+SLGTCIGKFTKGGKFHLT+Q +NLLA NAKHKVWLKP+SEMSFLYGNHVLK Sbjct: 64 TNIGRAQLVSLGTCIGKFTKGGKFHLTVQSVNLLAANAKHKVWLKPTSEMSFLYGNHVLK 123 Query: 183 GGLGRITENTSTGDGVVVFSMSDVPLGFGVA 275 GGLGRITEN GDGVVVFSMSDVPLGFG+A Sbjct: 124 GGLGRITENIVAGDGVVVFSMSDVPLGFGIA 154 >ref|XP_002279785.1| PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Vitis vinifera] gi|147783622|emb|CAN68143.1| hypothetical protein VITISV_035660 [Vitis vinifera] Length = 187 Score = 164 bits (416), Expect = 5e-39 Identities = 77/91 (84%), Positives = 84/91 (92%) Frame = +3 Query: 3 TNISREKLISLGTCIGKFTKGGKFHLTIQCLNLLADNAKHKVWLKPSSEMSFLYGNHVLK 182 TNI R +L+SLGTCIGKFTKGGKFHLT+Q +NLLA NAKHKVWLKP+SEMSFLYGNHVLK Sbjct: 64 TNIGRAQLVSLGTCIGKFTKGGKFHLTVQSVNLLAANAKHKVWLKPTSEMSFLYGNHVLK 123 Query: 183 GGLGRITENTSTGDGVVVFSMSDVPLGFGVA 275 GGLGRITEN GDG+VVFSMSDVPLGFG+A Sbjct: 124 GGLGRITENIVAGDGIVVFSMSDVPLGFGIA 154 >ref|XP_004159812.1| PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus] Length = 187 Score = 157 bits (397), Expect = 8e-37 Identities = 73/91 (80%), Positives = 81/91 (89%) Frame = +3 Query: 3 TNISREKLISLGTCIGKFTKGGKFHLTIQCLNLLADNAKHKVWLKPSSEMSFLYGNHVLK 182 TN++R L+SLGTCIGKFT GG FHLT+Q L LL+ NAKHKVWLKP+SEMSFLYGNHVLK Sbjct: 64 TNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNHVLK 123 Query: 183 GGLGRITENTSTGDGVVVFSMSDVPLGFGVA 275 GGLGRITEN GDGVVV+SMSDVPLGFG+A Sbjct: 124 GGLGRITENIVPGDGVVVYSMSDVPLGFGIA 154 >ref|XP_004134205.1| PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus] Length = 187 Score = 157 bits (397), Expect = 8e-37 Identities = 73/91 (80%), Positives = 81/91 (89%) Frame = +3 Query: 3 TNISREKLISLGTCIGKFTKGGKFHLTIQCLNLLADNAKHKVWLKPSSEMSFLYGNHVLK 182 TN++R L+SLGTCIGKFT GG FHLT+Q L LL+ NAKHKVWLKP+SEMSFLYGNHVLK Sbjct: 64 TNVARSNLVSLGTCIGKFTHGGSFHLTVQSLGLLSPNAKHKVWLKPTSEMSFLYGNHVLK 123 Query: 183 GGLGRITENTSTGDGVVVFSMSDVPLGFGVA 275 GGLGRITEN GDGVVV+SMSDVPLGFG+A Sbjct: 124 GGLGRITENIVPGDGVVVYSMSDVPLGFGIA 154 >gb|ADE76484.1| unknown [Picea sitchensis] Length = 188 Score = 157 bits (397), Expect = 8e-37 Identities = 75/91 (82%), Positives = 84/91 (92%) Frame = +3 Query: 3 TNISREKLISLGTCIGKFTKGGKFHLTIQCLNLLADNAKHKVWLKPSSEMSFLYGNHVLK 182 TNISRE+L+SLGTCIGKFTK GKF LTIQ L+LLA +AK K+WLKP+SEMSFLYGNHVLK Sbjct: 65 TNISRERLVSLGTCIGKFTKSGKFQLTIQSLDLLAAHAKRKIWLKPTSEMSFLYGNHVLK 124 Query: 183 GGLGRITENTSTGDGVVVFSMSDVPLGFGVA 275 GGLGRITENT+ +GVV+FSMSDVPLGFGVA Sbjct: 125 GGLGRITENTAQNEGVVIFSMSDVPLGFGVA 155