BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004927
         (1590 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation spec...   608   e-172
ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation spec...   608   e-171
ref|XP_003534764.1| PREDICTED: cleavage and polyadenylation spec...   606   e-171
ref|XP_002523201.1| conserved hypothetical protein [Ricinus comm...   588   e-165
emb|CBI30994.3| unnamed protein product [Vitis vinifera]              572   e-160

>ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation specificity factor
            CPSF30-like [Glycine max]
          Length = 691

 Score =  608 bits (1569), Expect = e-172
 Identities = 317/509 (62%), Positives = 350/509 (68%), Gaps = 8/509 (1%)
 Frame = -2

Query: 1505 MEEQEGGLNFDFEGGLEXXXXXXXXXXXXXXXXXXXXXXXXXTDSHFPQSLNQPQLIXXX 1326
            ME+ EG L+FDFEGGL+                           S+   +   P      
Sbjct: 1    MEDSEGVLSFDFEGGLDAAPSSAAAAVPSGPLVQHDSSAAASAVSNGGHAAPAPSTADPA 60

Query: 1325 XXNFSEXXXXXXXXXXXXXXXXGSRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPV 1146
              N                     RRSFRQTVCRHWLR LCMKGDACGFLHQYDKARMPV
Sbjct: 61   GGNVP------------------GRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPV 102

Query: 1145 CRFFRLYGECREQDCVYKHTNEEVKECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVFQ 966
            CRFFRLYGECREQDCVYKHTNE++KECNMY+LGFCPNGPDCRYRHAK PGPPPPVEEV Q
Sbjct: 103  CRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQ 162

Query: 965  KIQHLSS---GTNNRFFQPRNGGYGQQAERYQVPQGSSMVNQGFK-QSTTAESTXXXXXX 798
            KIQHL S    ++N+FFQ R   Y QQAE+ Q+PQG++  NQG   +   AES       
Sbjct: 163  KIQHLFSYNYNSSNKFFQQRGASYNQQAEKPQLPQGTNSTNQGVTGKPLPAES--GNAQP 220

Query: 797  XXXXXXXXXQVNQTQLPNLPDGQ---GNRMASPLPPGLSRYFVVKSCNRENLELSAQQGV 627
                     QVNQ+Q+ N+ +GQ    NR A+PLP G+SRYF+VKSCNRENLELS QQGV
Sbjct: 221  QQQVQQSQQQVNQSQMQNVANGQPNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGV 280

Query: 626  WATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSKIGEIAGGGNWKYAHGTAH 447
            WATQRSNE+KLNEAFDSVENVIL+FSVNRTRHFQGCAKMTS+IG    GGNWKYAHGTAH
Sbjct: 281  WATQRSNESKLNEAFDSVENVILVFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAH 340

Query: 446  YGRNFSVKWLKLCELSFHKTRHLRNPRNDNLPVKISRDCQELEPFIGQQLASLLYLEPDS 267
            YGRNFSVKWLKLCELSFHKTRHLRNP N+NLPVKISRDCQELEP IG+QLASLLYLEPDS
Sbjct: 341  YGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDS 400

Query: 266  ELMAISVAAESKRKEEKAMGVNPDDGAENPDIVPF-XXXXXXXXXXXXXXXXSXXXXXXX 90
            ELMAISVAAESKR+EEKA GVNPD+G ENPDIVPF                         
Sbjct: 401  ELMAISVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFSHGVGPA 460

Query: 89   XXXXXXXXXGMWPPHMHPAYGGRPIPGVR 3
                      MWPPHM    G RP+PG++
Sbjct: 461  GQGRGRGRGMMWPPHMPLGRGARPMPGMQ 489


>ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation specificity factor
            CPSF30-like [Vitis vinifera]
          Length = 673

 Score =  608 bits (1568), Expect = e-171
 Identities = 308/426 (72%), Positives = 332/426 (77%), Gaps = 9/426 (2%)
 Frame = -2

Query: 1253 RRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEEV 1074
            RRSFRQTVCRHWLR LCMKGDACGFLHQYDK+RMPVCRFFRLYGECREQDCVYKHTNE++
Sbjct: 57   RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDI 116

Query: 1073 KECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQHLSS---GTNNRFFQPRNGGY 903
            KECNMY+LGFCPNG DCRYRHAKLPGPPP +EEVFQKIQ LSS   G++NRF+Q RN  Y
Sbjct: 117  KECNMYKLGFCPNGSDCRYRHAKLPGPPPTMEEVFQKIQQLSSFNYGSSNRFYQNRNP-Y 175

Query: 902  GQQAERYQVPQGSSMVNQGFKQSTTAES--TXXXXXXXXXXXXXXXQVNQTQLPNLPDG- 732
             QQ E+ Q+ QGS+ VN G    T A+S  T               QV+QT + NLP+G 
Sbjct: 176  NQQTEKSQILQGSNAVNLG----TVAKSSTTEAINVQQQQVQPPQQQVSQTPMQNLPNGL 231

Query: 731  --QGNRMASPLPPGLSRYFVVKSCNRENLELSAQQGVWATQRSNEAKLNEAFDSVENVIL 558
              Q N+ ASPLP G+SRYF+VKSCNRENLELS QQGVWATQRSNEAKLNEAFDSVENVIL
Sbjct: 232  PNQANKTASPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVIL 291

Query: 557  IFSVNRTRHFQGCAKMTSKIGEIAGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHL 378
            IFSVNRTRHFQGCAKMTSKIG   GGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHL
Sbjct: 292  IFSVNRTRHFQGCAKMTSKIGGFVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHL 351

Query: 377  RNPRNDNLPVKISRDCQELEPFIGQQLASLLYLEPDSELMAISVAAESKRKEEKAMGVNP 198
            RNP N+NLPVKISRDCQELEP IG+QLASLLYLEPDSELMAIS+AAESKR+EEKA GVNP
Sbjct: 352  RNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVNP 411

Query: 197  DDGAENPDIVPF-XXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXGMWPPHMHPAYGGR 21
            D+G ENPDIVPF                                   MWPPHM  A G R
Sbjct: 412  DNGGENPDIVPFEDNEEEEEEESEEEEESFGQALGPAAQGRGRGRGIMWPPHMPLARGAR 471

Query: 20   PIPGVR 3
            PIP +R
Sbjct: 472  PIPSMR 477


>ref|XP_003534764.1| PREDICTED: cleavage and polyadenylation specificity factor
            CPSF30-like [Glycine max]
          Length = 681

 Score =  606 bits (1562), Expect = e-171
 Identities = 300/424 (70%), Positives = 326/424 (76%), Gaps = 7/424 (1%)
 Frame = -2

Query: 1253 RRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEEV 1074
            RRSFRQTVCRHWLR LCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNE++
Sbjct: 67   RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDI 126

Query: 1073 KECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQHLSS---GTNNRFFQPRNGGY 903
            KECNMY+LGFCPNGPDCRYRHAK PGPPPPVEEV QKIQHL S    ++N+FFQ R   Y
Sbjct: 127  KECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGASY 186

Query: 902  GQQAERYQVPQGSSMVNQGFKQSTTAESTXXXXXXXXXXXXXXXQVNQTQLPNLPDGQ-- 729
             QQAE+  +PQG++  NQG        +                QVNQ+Q+ N+ +GQ  
Sbjct: 187  NQQAEKPLLPQGNNSTNQGVT-GNPLPAELGNAQPQQQVQQSQQQVNQSQMQNVANGQPN 245

Query: 728  -GNRMASPLPPGLSRYFVVKSCNRENLELSAQQGVWATQRSNEAKLNEAFDSVENVILIF 552
              NR A+PLP G+SRYF+VKSCNRENLELS QQGVWATQRSNE+KLNEAFDSVENVILIF
Sbjct: 246  QANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIF 305

Query: 551  SVNRTRHFQGCAKMTSKIGEIAGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRN 372
            SVNRTRHFQGCAKMTSKIG    GGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRN
Sbjct: 306  SVNRTRHFQGCAKMTSKIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRN 365

Query: 371  PRNDNLPVKISRDCQELEPFIGQQLASLLYLEPDSELMAISVAAESKRKEEKAMGVNPDD 192
            P N+NLPVKISRDCQELEP IG+QLASLLYLEPDSELMAISVAAESKR+EEKA GVNPD+
Sbjct: 366  PYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDN 425

Query: 191  GAENPDIVPF-XXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXGMWPPHMHPAYGGRPI 15
            G ENPDIVPF                                   MWPPHM    G RP+
Sbjct: 426  GGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPM 485

Query: 14   PGVR 3
            PG++
Sbjct: 486  PGMQ 489


>ref|XP_002523201.1| conserved hypothetical protein [Ricinus communis]
            gi|223537608|gb|EEF39232.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 702

 Score =  588 bits (1516), Expect = e-165
 Identities = 294/429 (68%), Positives = 322/429 (75%), Gaps = 12/429 (2%)
 Frame = -2

Query: 1253 RRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEEV 1074
            RRSFRQTVCRHWLR LCMKGDACGFLHQYDK+RMPVCRFFRLYGECREQDCVYKHTNE++
Sbjct: 70   RRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDI 129

Query: 1073 KECNMYRLGFCPNGPDCRYRHAKLPGPPPPVEEVFQKIQHLSS---GTNNRFFQPRNGGY 903
            KECNMY+LGFCPNGPDCRYRHAKLPGPPPPVEEV QKIQ L+S   G++N+FFQ R  G+
Sbjct: 130  KECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLNSYNYGSSNKFFQQRGAGF 189

Query: 902  GQQAERYQVPQGSSMVNQGFK------QSTTAESTXXXXXXXXXXXXXXXQVNQTQLPNL 741
             Q A++ Q  QG + + QG        +S   +                 Q  QT   NL
Sbjct: 190  QQHADKSQFSQGPNNMGQGMAAKPPGTESANVQQPQQQQPQPGQGQQSQQQATQTPTQNL 249

Query: 740  PDGQ---GNRMASPLPPGLSRYFVVKSCNRENLELSAQQGVWATQRSNEAKLNEAFDSVE 570
            P+GQ    NR A PLP G+SRYF+VKSCNRENLELS QQGVWATQRSNEAKLNEAFDS E
Sbjct: 250  PNGQPNQANRTAIPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAE 309

Query: 569  NVILIFSVNRTRHFQGCAKMTSKIGEIAGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHK 390
            NVILIFSVNRTRHFQGCAKMTSKIG   GGGNWKYAHGTAHYGRNFSVKWLKLCELSFHK
Sbjct: 310  NVILIFSVNRTRHFQGCAKMTSKIGASVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHK 369

Query: 389  TRHLRNPRNDNLPVKISRDCQELEPFIGQQLASLLYLEPDSELMAISVAAESKRKEEKAM 210
            TRHLRNP N+NLPVKISRDCQELEP +G QLA LLY EPDSELMAIS+AAE+KR+EEKA 
Sbjct: 370  TRHLRNPYNENLPVKISRDCQELEPSVGGQLACLLYDEPDSELMAISLAAEAKREEEKAK 429

Query: 209  GVNPDDGAENPDIVPFXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXGMWPPHMHPAY 30
            GVNP++G +NPDIVPF                S                G+  PHM  A 
Sbjct: 430  GVNPENGGDNPDIVPFEDNEEEEEEESEEEEESFGQALGAPGQGRGRGRGIIWPHMPLAR 489

Query: 29   GGRPIPGVR 3
            G RPIPG+R
Sbjct: 490  GARPIPGMR 498


>emb|CBI30994.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score =  572 bits (1474), Expect = e-160
 Identities = 292/409 (71%), Positives = 316/409 (77%), Gaps = 9/409 (2%)
 Frame = -2

Query: 1202 MKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEEVKECNMYRLGFCPNGPDC 1023
            MKGDACGFLHQYDK+RMPVCRFFRLYGECREQDCVYKHTNE++KECNMY+LGFCPNG DC
Sbjct: 1    MKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGSDC 60

Query: 1022 RYRHAKLPGPPPPVEEVFQKIQHLSS---GTNNRFFQPRNGGYGQQAERYQVPQGSSMVN 852
            RYRHAKLPGPPP +EEVFQKIQ LSS   G++NRF+Q RN  Y QQ E+ Q+ QGS+ VN
Sbjct: 61   RYRHAKLPGPPPTMEEVFQKIQQLSSFNYGSSNRFYQNRNP-YNQQTEKSQILQGSNAVN 119

Query: 851  QGFKQSTTAES--TXXXXXXXXXXXXXXXQVNQTQLPNLPDG---QGNRMASPLPPGLSR 687
             G    T A+S  T               QV+QT + NLP+G   Q N+ ASPLP G+SR
Sbjct: 120  LG----TVAKSSTTEAINVQQQQVQPPQQQVSQTPMQNLPNGLPNQANKTASPLPQGISR 175

Query: 686  YFVVKSCNRENLELSAQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMT 507
            YF+VKSCNRENLELS QQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMT
Sbjct: 176  YFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKMT 235

Query: 506  SKIGEIAGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPRNDNLPVKISRDCQ 327
            SKIG   GGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNP N+NLPVKISRDCQ
Sbjct: 236  SKIGGFVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQ 295

Query: 326  ELEPFIGQQLASLLYLEPDSELMAISVAAESKRKEEKAMGVNPDDGAENPDIVPF-XXXX 150
            ELEP IG+QLASLLYLEPDSELMAIS+AAESKR+EEKA GVNPD+G ENPDIVPF     
Sbjct: 296  ELEPSIGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVNPDNGGENPDIVPFEDNEE 355

Query: 149  XXXXXXXXXXXXSXXXXXXXXXXXXXXXXGMWPPHMHPAYGGRPIPGVR 3
                                          MWPPHM  A G RPIP +R
Sbjct: 356  EEEEESEEEEESFGQALGPAAQGRGRGRGIMWPPHMPLARGARPIPSMR 404