BLASTX nr result
ID: Coptis24_contig00004852
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004852 (802 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003533384.1| PREDICTED: DNA mismatch repair protein Msh6-... 226 3e-57 ref|XP_003620513.1| DNA mismatch repair protein Msh6-2 [Medicago... 226 6e-57 emb|CBI28088.3| unnamed protein product [Vitis vinifera] 221 1e-55 ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-... 221 1e-55 emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera] 220 3e-55 >ref|XP_003533384.1| PREDICTED: DNA mismatch repair protein Msh6-2-like [Glycine max] Length = 1116 Score = 226 bits (577), Expect = 3e-57 Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 2/158 (1%) Frame = -3 Query: 794 VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFKPNESTFS-GDRELVFLYR 618 VFRHL+EKVNCR+LFATHYHSLTKEFASHP V +QHMACAFK T S D+ELVFLYR Sbjct: 959 VFRHLIEKVNCRMLFATHYHSLTKEFASHPRVIMQHMACAFKSKSDTHSMRDQELVFLYR 1018 Query: 617 LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438 LASG CPESYGLQVALMAGIP+K V +ASKA Q MK SIG++FRSSEQRSEFSTLHE WL Sbjct: 1019 LASGPCPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGQSFRSSEQRSEFSTLHEEWL 1078 Query: 437 KTLLGFAK-KGGRSLDEDACDTFLCLYLELKSFYQKGK 327 KTL+ ++ + SLDEDA DT +CL+ ELK+ + GK Sbjct: 1079 KTLVSISRIEDCNSLDEDALDTLICLWYELKTSFISGK 1116 >ref|XP_003620513.1| DNA mismatch repair protein Msh6-2 [Medicago truncatula] gi|355495528|gb|AES76731.1| DNA mismatch repair protein Msh6-2 [Medicago truncatula] Length = 1160 Score = 226 bits (575), Expect = 6e-57 Identities = 115/157 (73%), Positives = 127/157 (80%), Gaps = 2/157 (1%) Frame = -3 Query: 794 VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFKPNESTFSG-DRELVFLYR 618 VFRHL+EKVNCRLLFATHYH LTKEFASHP VT+QHMACAFK T S D+ELVFLYR Sbjct: 1003 VFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKQDQELVFLYR 1062 Query: 617 LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438 LA GACPESYGLQVALMAGIP+K V VASKA Q MK SIGKNFRSSEQRSEFS+LHE WL Sbjct: 1063 LAPGACPESYGLQVALMAGIPEKTVNVASKASQQMKISIGKNFRSSEQRSEFSSLHEEWL 1122 Query: 437 KTLLGFAK-KGGRSLDEDACDTFLCLYLELKSFYQKG 330 KTL+ A+ + S D+D DT +CL ELKS ++ G Sbjct: 1123 KTLMSIARIEDVESFDDDVLDTLVCLRYELKSSFKSG 1159 >emb|CBI28088.3| unnamed protein product [Vitis vinifera] Length = 1126 Score = 221 bits (564), Expect = 1e-55 Identities = 109/154 (70%), Positives = 127/154 (82%), Gaps = 1/154 (0%) Frame = -3 Query: 794 VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFK-PNESTFSGDRELVFLYR 618 VFRHLVEKVNCRLLFATHYH LTKEFASHP+VTLQHMAC F E + G++ELVFLY+ Sbjct: 959 VFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACTFNLKGEKSSGGEQELVFLYQ 1018 Query: 617 LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438 L SGACPESYGLQVALMAG+PK++VE AS AG+MMK SIG++FR+SEQRSEFSTLHE WL Sbjct: 1019 LTSGACPESYGLQVALMAGVPKEVVEAASTAGRMMKQSIGESFRTSEQRSEFSTLHEEWL 1078 Query: 437 KTLLGFAKKGGRSLDEDACDTFLCLYLELKSFYQ 336 K LL ++ G + D+DA DT CL+ E+KS Q Sbjct: 1079 KALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQ 1112 >ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-2 [Vitis vinifera] Length = 1122 Score = 221 bits (564), Expect = 1e-55 Identities = 109/154 (70%), Positives = 127/154 (82%), Gaps = 1/154 (0%) Frame = -3 Query: 794 VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFK-PNESTFSGDRELVFLYR 618 VFRHLVEKVNCRLLFATHYH LTKEFASHP+VTLQHMAC F E + G++ELVFLY+ Sbjct: 955 VFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACTFNLKGEKSSGGEQELVFLYQ 1014 Query: 617 LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438 L SGACPESYGLQVALMAG+PK++VE AS AG+MMK SIG++FR+SEQRSEFSTLHE WL Sbjct: 1015 LTSGACPESYGLQVALMAGVPKEVVEAASTAGRMMKQSIGESFRTSEQRSEFSTLHEEWL 1074 Query: 437 KTLLGFAKKGGRSLDEDACDTFLCLYLELKSFYQ 336 K LL ++ G + D+DA DT CL+ E+KS Q Sbjct: 1075 KALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQ 1108 >emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera] Length = 1090 Score = 220 bits (560), Expect = 3e-55 Identities = 109/154 (70%), Positives = 126/154 (81%), Gaps = 1/154 (0%) Frame = -3 Query: 794 VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFK-PNESTFSGDRELVFLYR 618 VFRHLVEKVNCRLLFATHYH LTKEFASHP+VTLQHMAC F E + G++ELVFLY+ Sbjct: 923 VFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACTFNLKGEKSSGGEQELVFLYQ 982 Query: 617 LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438 L SGACPESYGLQVALMAG PK++VE AS AG+MMK SIG++FR+SEQRSEFSTLHE WL Sbjct: 983 LTSGACPESYGLQVALMAGXPKEVVEAASTAGRMMKQSIGESFRTSEQRSEFSTLHEEWL 1042 Query: 437 KTLLGFAKKGGRSLDEDACDTFLCLYLELKSFYQ 336 K LL ++ G + D+DA DT CL+ E+KS Q Sbjct: 1043 KALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQ 1076