BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004852
         (802 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533384.1| PREDICTED: DNA mismatch repair protein Msh6-...   226   3e-57
ref|XP_003620513.1| DNA mismatch repair protein Msh6-2 [Medicago...   226   6e-57
emb|CBI28088.3| unnamed protein product [Vitis vinifera]              221   1e-55
ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-...   221   1e-55
emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera]   220   3e-55

>ref|XP_003533384.1| PREDICTED: DNA mismatch repair protein Msh6-2-like [Glycine max]
          Length = 1116

 Score =  226 bits (577), Expect = 3e-57
 Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 2/158 (1%)
 Frame = -3

Query: 794  VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFKPNESTFS-GDRELVFLYR 618
            VFRHL+EKVNCR+LFATHYHSLTKEFASHP V +QHMACAFK    T S  D+ELVFLYR
Sbjct: 959  VFRHLIEKVNCRMLFATHYHSLTKEFASHPRVIMQHMACAFKSKSDTHSMRDQELVFLYR 1018

Query: 617  LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438
            LASG CPESYGLQVALMAGIP+K V +ASKA Q MK SIG++FRSSEQRSEFSTLHE WL
Sbjct: 1019 LASGPCPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGQSFRSSEQRSEFSTLHEEWL 1078

Query: 437  KTLLGFAK-KGGRSLDEDACDTFLCLYLELKSFYQKGK 327
            KTL+  ++ +   SLDEDA DT +CL+ ELK+ +  GK
Sbjct: 1079 KTLVSISRIEDCNSLDEDALDTLICLWYELKTSFISGK 1116


>ref|XP_003620513.1| DNA mismatch repair protein Msh6-2 [Medicago truncatula]
            gi|355495528|gb|AES76731.1| DNA mismatch repair protein
            Msh6-2 [Medicago truncatula]
          Length = 1160

 Score =  226 bits (575), Expect = 6e-57
 Identities = 115/157 (73%), Positives = 127/157 (80%), Gaps = 2/157 (1%)
 Frame = -3

Query: 794  VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFKPNESTFSG-DRELVFLYR 618
            VFRHL+EKVNCRLLFATHYH LTKEFASHP VT+QHMACAFK    T S  D+ELVFLYR
Sbjct: 1003 VFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTLSKQDQELVFLYR 1062

Query: 617  LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438
            LA GACPESYGLQVALMAGIP+K V VASKA Q MK SIGKNFRSSEQRSEFS+LHE WL
Sbjct: 1063 LAPGACPESYGLQVALMAGIPEKTVNVASKASQQMKISIGKNFRSSEQRSEFSSLHEEWL 1122

Query: 437  KTLLGFAK-KGGRSLDEDACDTFLCLYLELKSFYQKG 330
            KTL+  A+ +   S D+D  DT +CL  ELKS ++ G
Sbjct: 1123 KTLMSIARIEDVESFDDDVLDTLVCLRYELKSSFKSG 1159


>emb|CBI28088.3| unnamed protein product [Vitis vinifera]
          Length = 1126

 Score =  221 bits (564), Expect = 1e-55
 Identities = 109/154 (70%), Positives = 127/154 (82%), Gaps = 1/154 (0%)
 Frame = -3

Query: 794  VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFK-PNESTFSGDRELVFLYR 618
            VFRHLVEKVNCRLLFATHYH LTKEFASHP+VTLQHMAC F    E +  G++ELVFLY+
Sbjct: 959  VFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACTFNLKGEKSSGGEQELVFLYQ 1018

Query: 617  LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438
            L SGACPESYGLQVALMAG+PK++VE AS AG+MMK SIG++FR+SEQRSEFSTLHE WL
Sbjct: 1019 LTSGACPESYGLQVALMAGVPKEVVEAASTAGRMMKQSIGESFRTSEQRSEFSTLHEEWL 1078

Query: 437  KTLLGFAKKGGRSLDEDACDTFLCLYLELKSFYQ 336
            K LL  ++ G  + D+DA DT  CL+ E+KS  Q
Sbjct: 1079 KALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQ 1112


>ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-2 [Vitis vinifera]
          Length = 1122

 Score =  221 bits (564), Expect = 1e-55
 Identities = 109/154 (70%), Positives = 127/154 (82%), Gaps = 1/154 (0%)
 Frame = -3

Query: 794  VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFK-PNESTFSGDRELVFLYR 618
            VFRHLVEKVNCRLLFATHYH LTKEFASHP+VTLQHMAC F    E +  G++ELVFLY+
Sbjct: 955  VFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACTFNLKGEKSSGGEQELVFLYQ 1014

Query: 617  LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438
            L SGACPESYGLQVALMAG+PK++VE AS AG+MMK SIG++FR+SEQRSEFSTLHE WL
Sbjct: 1015 LTSGACPESYGLQVALMAGVPKEVVEAASTAGRMMKQSIGESFRTSEQRSEFSTLHEEWL 1074

Query: 437  KTLLGFAKKGGRSLDEDACDTFLCLYLELKSFYQ 336
            K LL  ++ G  + D+DA DT  CL+ E+KS  Q
Sbjct: 1075 KALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQ 1108


>emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera]
          Length = 1090

 Score =  220 bits (560), Expect = 3e-55
 Identities = 109/154 (70%), Positives = 126/154 (81%), Gaps = 1/154 (0%)
 Frame = -3

Query: 794  VFRHLVEKVNCRLLFATHYHSLTKEFASHPNVTLQHMACAFK-PNESTFSGDRELVFLYR 618
            VFRHLVEKVNCRLLFATHYH LTKEFASHP+VTLQHMAC F    E +  G++ELVFLY+
Sbjct: 923  VFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQHMACTFNLKGEKSSGGEQELVFLYQ 982

Query: 617  LASGACPESYGLQVALMAGIPKKLVEVASKAGQMMKDSIGKNFRSSEQRSEFSTLHEGWL 438
            L SGACPESYGLQVALMAG PK++VE AS AG+MMK SIG++FR+SEQRSEFSTLHE WL
Sbjct: 983  LTSGACPESYGLQVALMAGXPKEVVEAASTAGRMMKQSIGESFRTSEQRSEFSTLHEEWL 1042

Query: 437  KTLLGFAKKGGRSLDEDACDTFLCLYLELKSFYQ 336
            K LL  ++ G  + D+DA DT  CL+ E+KS  Q
Sbjct: 1043 KALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQ 1076