BLASTX nr result

ID: Coptis24_contig00004834 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004834
         (328 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268698.2| PREDICTED: uncharacterized protein LOC100250...    73   1e-21
ref|XP_002300173.1| predicted protein [Populus trichocarpa] gi|2...    72   6e-21
ref|XP_004157675.1| PREDICTED: uncharacterized protein LOC101223...    73   1e-20
ref|XP_004133994.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...    73   1e-20
gb|ABK94861.1| unknown [Populus trichocarpa]                           73   2e-20

>ref|XP_002268698.2| PREDICTED: uncharacterized protein LOC100250267 [Vitis vinifera]
          Length = 307

 Score = 72.8 bits (177), Expect(2) = 1e-21
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +3

Query: 213 RMMAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHL 323
           RM+ QDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHL
Sbjct: 128 RMIPQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHL 164



 Score = 55.1 bits (131), Expect(2) = 1e-21
 Identities = 26/34 (76%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   LKSHLQKYRLGKQSCKDFADSSKDASGIAESQGT 103
           LKSHLQKYRLGKQSCK+  D+ K+AS IAESQ T
Sbjct: 86  LKSHLQKYRLGKQSCKELTDNCKEASCIAESQDT 119


>ref|XP_002300173.1| predicted protein [Populus trichocarpa] gi|222847431|gb|EEE84978.1|
           predicted protein [Populus trichocarpa]
          Length = 285

 Score = 71.6 bits (174), Expect(2) = 6e-21
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +3

Query: 213 RMMAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHL 323
           RM+AQDLNDGYQVTEALRVQMEVQRRLHEQLEVQR L
Sbjct: 124 RMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRL 160



 Score = 53.9 bits (128), Expect(2) = 6e-21
 Identities = 27/34 (79%), Positives = 30/34 (88%)
 Frame = +2

Query: 2   LKSHLQKYRLGKQSCKDFADSSKDASGIAESQGT 103
           LKSHLQKYRLGKQSCK+  D+SKDAS +AESQ T
Sbjct: 83  LKSHLQKYRLGKQSCKESTDNSKDAS-VAESQDT 115


>ref|XP_004157675.1| PREDICTED: uncharacterized protein LOC101223852 [Cucumis sativus]
          Length = 315

 Score = 73.2 bits (178), Expect(2) = 1e-20
 Identities = 35/37 (94%), Positives = 37/37 (100%)
 Frame = +3

Query: 213 RMMAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHL 323
           R+MAQDLNDG+QVTEALRVQMEVQRRLHEQLEVQRHL
Sbjct: 137 RIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHL 173



 Score = 51.6 bits (122), Expect(2) = 1e-20
 Identities = 26/34 (76%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   LKSHLQKYRLGKQSCKDFADSSKDASGIAESQGT 103
           LKSHLQKYRLGKQS K+  ++SKDAS IAESQ T
Sbjct: 95  LKSHLQKYRLGKQSFKESTENSKDASCIAESQET 128


>ref|XP_004133994.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
           LOC101213244 [Cucumis sativus]
          Length = 315

 Score = 73.2 bits (178), Expect(2) = 1e-20
 Identities = 35/37 (94%), Positives = 37/37 (100%)
 Frame = +3

Query: 213 RMMAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHL 323
           R+MAQDLNDG+QVTEALRVQMEVQRRLHEQLEVQRHL
Sbjct: 137 RIMAQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHL 173



 Score = 51.6 bits (122), Expect(2) = 1e-20
 Identities = 26/34 (76%), Positives = 29/34 (85%)
 Frame = +2

Query: 2   LKSHLQKYRLGKQSCKDFADSSKDASGIAESQGT 103
           LKSHLQKYRLGKQS K+  ++SKDAS IAESQ T
Sbjct: 95  LKSHLQKYRLGKQSFKESTENSKDASCIAESQET 128


>gb|ABK94861.1| unknown [Populus trichocarpa]
          Length = 309

 Score = 72.8 bits (177), Expect(2) = 2e-20
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = +3

Query: 213 RMMAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHL 323
           RM+AQDLNDGYQVTEALRVQMEVQRRLHEQLEVQ HL
Sbjct: 128 RMIAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHL 164



 Score = 51.2 bits (121), Expect(2) = 2e-20
 Identities = 26/37 (70%), Positives = 29/37 (78%), Gaps = 3/37 (8%)
 Frame = +2

Query: 2   LKSHLQKYRLGKQSCKDFADSSKD---ASGIAESQGT 103
           LKSHLQKYRLGKQSCK+  D+SKD   A  +AESQ T
Sbjct: 83  LKSHLQKYRLGKQSCKESTDNSKDVGIAPSVAESQDT 119


Top