BLASTX nr result
ID: Coptis24_contig00004782
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004782
(1203 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, put... 278 2e-72
ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleop... 272 1e-70
ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleop... 266 6e-69
ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory pr... 266 1e-68
ref|XP_002307213.1| predicted protein [Populus trichocarpa] gi|2... 259 7e-67
>ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus communis]
gi|223539109|gb|EEF40705.1| heterogeneous nuclear
ribonucleoprotein, putative [Ricinus communis]
Length = 264
Score = 278 bits (711), Expect = 2e-72
Identities = 140/192 (72%), Positives = 155/192 (80%), Gaps = 3/192 (1%)
Frame = -3
Query: 1075 MYGSR-AMLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSYSGGLNRA-FPVI 902
MYGSR AMLGSGG SDGYEVGSKR RM+ES+PYFAV+GG+S +QPY Y GG A FPV+
Sbjct: 1 MYGSRGAMLGSGGVSDGYEVGSKRPRMMESNPYFAVSGGSSGFQPYGYGGGFQSAPFPVV 60
Query: 901 RLRGLPFNCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSM 722
RLRGLPFNCTDIDIFKFF GLDIVDVLL NKNGRFTGEAFVVF ++Q EFALQRD Q+M
Sbjct: 61 RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQNM 120
Query: 721 GRRYVEVFRCNKQDYYRAVAAEVKYEGIYD-EYXXXXXXXXXXXSVDKDQLEYTEFLKLR 545
GRRYVEVFRC +QDYY AVAAEV YEGIYD +Y DKDQLEYTE LK+R
Sbjct: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKDQLEYTEILKMR 180
Query: 544 GLPYSVTKSDIV 509
GLP+S K +I+
Sbjct: 181 GLPFSAKKPEII 192
Score = 62.4 bits (150), Expect = 2e-07
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = -2
Query: 335 KAMDKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 234
+AM KDKMTIGSRYVELF STPDEARRA+SRSRQ
Sbjct: 231 RAMSKDKMTIGSRYVELFPSTPDEARRAESRSRQ 264
>ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 263
Score = 272 bits (695), Expect = 1e-70
Identities = 139/191 (72%), Positives = 151/191 (79%), Gaps = 2/191 (1%)
Frame = -3
Query: 1075 MYGSR-AMLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSY-SGGLNRAFPVI 902
MYG R AMLGSGG SDGYEVGSKRQRM+E +PYFAV+ T+ +QPY Y S AFPV+
Sbjct: 1 MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVV 60
Query: 901 RLRGLPFNCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSM 722
RLRGLPFNCTDIDIFKFF GLDIVDVLL NKNGRF GEAFVVF SVQ EFALQRD Q+M
Sbjct: 61 RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNM 120
Query: 721 GRRYVEVFRCNKQDYYRAVAAEVKYEGIYDEYXXXXXXXXXXXSVDKDQLEYTEFLKLRG 542
GRRYVEVFRC +QDYY AVAAEV YEGIYD DKDQ+EYTE LKLRG
Sbjct: 121 GRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRG 180
Query: 541 LPYSVTKSDIV 509
LP+SVTKS+I+
Sbjct: 181 LPFSVTKSNII 191
Score = 60.5 bits (145), Expect = 8e-07
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = -2
Query: 335 KAMDKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 234
+AM KDKMTIGSRYVELF STP+EARRA+SRSRQ
Sbjct: 230 RAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ 263
Score = 58.9 bits (141), Expect = 2e-06
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = -3
Query: 907 VIRLRGLPFNCTDIDIFKFFTGLDIVDV---LLTNKNGRFTGEAFVVFPSSVQSEFALQR 737
+++LRGLPF+ T +I +FF D+ + + + +G+ TGEA+V F S+ +++ A+ +
Sbjct: 175 ILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSK 234
Query: 736 DHQSMGRRYVEVFRCNKQDYYRA 668
D ++G RYVE+F + RA
Sbjct: 235 DKMTIGSRYVELFPSTPNEARRA 257
>ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 256
Score = 266 bits (681), Expect = 6e-69
Identities = 134/184 (72%), Positives = 146/184 (79%), Gaps = 1/184 (0%)
Frame = -3
Query: 1057 MLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSY-SGGLNRAFPVIRLRGLPF 881
MLGSGG SDGYEVGSKRQRM+E +PYFAV+ T+ +QPY Y S AFPV+RLRGLPF
Sbjct: 1 MLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTAGFQPYGYGSFPPTHAFPVVRLRGLPF 60
Query: 880 NCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSMGRRYVEV 701
NCTDIDIFKFF GLDIVDVLL NKNGRF GEAFVVF SVQ EFALQRD Q+MGRRYVEV
Sbjct: 61 NCTDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEV 120
Query: 700 FRCNKQDYYRAVAAEVKYEGIYDEYXXXXXXXXXXXSVDKDQLEYTEFLKLRGLPYSVTK 521
FRC +QDYY AVAAEV YEGIYD DKDQ+EYTE LKLRGLP+SVTK
Sbjct: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTK 180
Query: 520 SDIV 509
S+I+
Sbjct: 181 SNII 184
Score = 60.5 bits (145), Expect = 8e-07
Identities = 29/34 (85%), Positives = 32/34 (94%)
Frame = -2
Query: 335 KAMDKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 234
+AM KDKMTIGSRYVELF STP+EARRA+SRSRQ
Sbjct: 223 RAMSKDKMTIGSRYVELFPSTPNEARRAESRSRQ 256
Score = 58.9 bits (141), Expect = 2e-06
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Frame = -3
Query: 907 VIRLRGLPFNCTDIDIFKFFTGLDIVDV---LLTNKNGRFTGEAFVVFPSSVQSEFALQR 737
+++LRGLPF+ T +I +FF D+ + + + +G+ TGEA+V F S+ +++ A+ +
Sbjct: 168 ILKLRGLPFSVTKSNIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSK 227
Query: 736 DHQSMGRRYVEVFRCNKQDYYRA 668
D ++G RYVE+F + RA
Sbjct: 228 DKMTIGSRYVELFPSTPNEARRA 250
>ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory protein 2-like [Vitis
vinifera]
Length = 264
Score = 266 bits (679), Expect = 1e-68
Identities = 133/192 (69%), Positives = 153/192 (79%), Gaps = 3/192 (1%)
Frame = -3
Query: 1075 MYGSR-AMLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSYSGGLNR-AFPVI 902
MYGSR AMLGSGG SDGYE+GSKRQRM+ES+PYFAV+ S +QPY Y G FPV+
Sbjct: 1 MYGSRGAMLGSGGVSDGYEIGSKRQRMMESNPYFAVSSSASGFQPYGYGSGFQPPTFPVV 60
Query: 901 RLRGLPFNCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSM 722
RLRGLPFNCTDIDIFKFF GLDIVDVLL NK+GRF+GEA+VVF S+Q++FALQRD Q+M
Sbjct: 61 RLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNM 120
Query: 721 GRRYVEVFRCNKQDYYRAVAAEVKYEGIYD-EYXXXXXXXXXXXSVDKDQLEYTEFLKLR 545
GRRYVEVFRC KQDYY AVA+EV YEGIYD ++ DKDQ+E+TE LKLR
Sbjct: 121 GRRYVEVFRCKKQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLR 180
Query: 544 GLPYSVTKSDIV 509
GLP+SV KS I+
Sbjct: 181 GLPFSVKKSQIL 192
Score = 63.2 bits (152), Expect = 1e-07
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = -2
Query: 335 KAMDKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 234
KAM KDKMTIGSRYVELF STPDEARRA+SRSRQ
Sbjct: 231 KAMGKDKMTIGSRYVELFPSTPDEARRAESRSRQ 264
>ref|XP_002307213.1| predicted protein [Populus trichocarpa] gi|222856662|gb|EEE94209.1|
predicted protein [Populus trichocarpa]
Length = 257
Score = 259 bits (663), Expect = 7e-67
Identities = 127/185 (68%), Positives = 146/185 (78%), Gaps = 2/185 (1%)
Frame = -3
Query: 1057 MLGSGGFSDGYEVGSKRQRMIESHPYFAVTGGTSSYQPYSYSGGLNRA-FPVIRLRGLPF 881
MLGSGG SDGYEVGSKRQRM+ES+PYFAV+ G S +QPY Y GG FPV+RLRGLPF
Sbjct: 1 MLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGASGFQPYGYGGGFQPPPFPVVRLRGLPF 60
Query: 880 NCTDIDIFKFFTGLDIVDVLLTNKNGRFTGEAFVVFPSSVQSEFALQRDHQSMGRRYVEV 701
NC+D++I KFF GLDIVDVLL NK+GRFTGEAFVVF +Q EFALQRD Q+MGRRYVEV
Sbjct: 61 NCSDVEILKFFAGLDIVDVLLVNKSGRFTGEAFVVFAGPMQVEFALQRDRQNMGRRYVEV 120
Query: 700 FRCNKQDYYRAVAAEVKYEGIYD-EYXXXXXXXXXXXSVDKDQLEYTEFLKLRGLPYSVT 524
FRC +QDYY AVAAEV YEGIYD +Y DKDQ+EYTE LK+RGLP+S
Sbjct: 121 FRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPSRAKRFSDKDQMEYTEILKMRGLPFSAK 180
Query: 523 KSDIV 509
K++I+
Sbjct: 181 KAEII 185
Score = 59.3 bits (142), Expect = 2e-06
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = -2
Query: 335 KAMDKDKMTIGSRYVELFTSTPDEARRAKSRSRQ 234
+AM KDKMTIGSRYVELF ST DEARRA+SRSRQ
Sbjct: 224 RAMSKDKMTIGSRYVELFPSTQDEARRAESRSRQ 257
Score = 57.4 bits (137), Expect = 7e-06
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = -3
Query: 907 VIRLRGLPFNCTDIDIFKFFTGLDIVDV---LLTNKNGRFTGEAFVVFPSSVQSEFALQR 737
++++RGLPF+ +I +FF ++D + +G+ TGEA+V F S+ +++ A+ +
Sbjct: 169 ILKMRGLPFSAKKAEIIEFFKDFKLIDERIHIACRPDGKATGEAYVEFISAEEAKRAMSK 228
Query: 736 DHQSMGRRYVEVFRCNKQDYYRA 668
D ++G RYVE+F + + RA
Sbjct: 229 DKMTIGSRYVELFPSTQDEARRA 251