BLASTX nr result
ID: Coptis24_contig00004778
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004778 (542 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera] 159 1e-56 ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3... 159 1e-56 ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|2... 165 9e-56 ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|2... 165 9e-56 ref|XP_003538383.1| PREDICTED: 60S ribosomal export protein NMD3... 153 4e-55 >emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera] Length = 594 Score = 159 bits (401), Expect(2) = 1e-56 Identities = 73/112 (65%), Positives = 87/112 (77%) Frame = +1 Query: 4 LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183 +KF+EF+GKV P +SR+DKQLVSHDTKSN+YNYK+TFSVEICP+CREDL+C Sbjct: 208 VKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTFSVEICPICREDLICLPPKVAVSL 267 Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339 C KV+NNI L+DPFTLRH FLDADQYWR F++LLS +QLVEYI Sbjct: 268 GNLGPVVICTKVSNNIALLDPFTLRHCFLDADQYWRSSFKALLSSRQLVEYI 319 Score = 86.3 bits (212), Expect(2) = 1e-56 Identities = 39/47 (82%), Positives = 43/47 (91%) Frame = +2 Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523 AD QVA VSDFGKND IFNIRTHLGHLLNPGD+ALGYD+Y AN+ND+ Sbjct: 340 ADAQVARVSDFGKNDTIFNIRTHLGHLLNPGDHALGYDVYAANSNDM 386 >ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera] Length = 510 Score = 159 bits (401), Expect(2) = 1e-56 Identities = 73/112 (65%), Positives = 87/112 (77%) Frame = +1 Query: 4 LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183 +KF+EF+GKV P +SR+DKQLVSHDTKSN+YNYK+TFSVEICP+CREDL+C Sbjct: 208 VKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTFSVEICPICREDLICLPPKVAVSL 267 Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339 C KV+NNI L+DPFTLRH FLDADQYWR F++LLS +QLVEYI Sbjct: 268 GNLGPLVICTKVSNNIALLDPFTLRHCFLDADQYWRSSFKALLSSRQLVEYI 319 Score = 86.3 bits (212), Expect(2) = 1e-56 Identities = 39/47 (82%), Positives = 43/47 (91%) Frame = +2 Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523 AD QVA VSDFGKND IFNIRTHLGHLLNPGD+ALGYD+Y AN+ND+ Sbjct: 340 ADAQVARVSDFGKNDTIFNIRTHLGHLLNPGDHALGYDVYAANSNDM 386 >ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1| predicted protein [Populus trichocarpa] Length = 511 Score = 165 bits (417), Expect(2) = 9e-56 Identities = 76/112 (67%), Positives = 89/112 (79%) Frame = +1 Query: 4 LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183 +KF++F+GKV P+KSRNDKQLVSHDTKSN+YNYKHTFSVEI P+CREDLVC Sbjct: 209 VKFVDFVGKVAPVKSRNDKQLVSHDTKSNNYNYKHTFSVEISPICREDLVCLPPRVAVSL 268 Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339 C+KVTN+I L+DPFTLRH FLDADQYWR PF+SLL+ +QLVEYI Sbjct: 269 GNLGPLVICSKVTNSIALLDPFTLRHCFLDADQYWRTPFKSLLTSRQLVEYI 320 Score = 77.4 bits (189), Expect(2) = 9e-56 Identities = 34/47 (72%), Positives = 41/47 (87%) Frame = +2 Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523 AD VA +SDFGKND +FNI+THLGH+L PGDYALGYDL+ AN+ND+ Sbjct: 341 ADATVARMSDFGKNDTMFNIKTHLGHILKPGDYALGYDLHGANSNDM 387 >ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|222848846|gb|EEE86393.1| predicted protein [Populus trichocarpa] Length = 511 Score = 165 bits (417), Expect(2) = 9e-56 Identities = 76/112 (67%), Positives = 89/112 (79%) Frame = +1 Query: 4 LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183 +KF++F+GKV P+KSRNDKQLVSHDTKSN+YNYKHTFSVEI P+CREDLVC Sbjct: 209 VKFVDFVGKVAPVKSRNDKQLVSHDTKSNNYNYKHTFSVEISPICREDLVCLPPRVAVSL 268 Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339 C+KVTN+I L+DPFTLRH FLDADQYWR PF+SLL+ +QLVEYI Sbjct: 269 GNLGPLVICSKVTNSIALLDPFTLRHCFLDADQYWRTPFKSLLTSRQLVEYI 320 Score = 77.4 bits (189), Expect(2) = 9e-56 Identities = 34/47 (72%), Positives = 41/47 (87%) Frame = +2 Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523 AD VA +SDFGKND +FNI+THLGH+L PGDYALGYDL+ AN+ND+ Sbjct: 341 ADATVARMSDFGKNDTMFNIKTHLGHILKPGDYALGYDLHGANSNDM 387 >ref|XP_003538383.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max] Length = 510 Score = 153 bits (386), Expect(2) = 4e-55 Identities = 70/112 (62%), Positives = 86/112 (76%) Frame = +1 Query: 4 LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183 +KF+EF+GKV P++SR+DKQLVSHD KSN+YNYK+TFSVEI P+CREDL+C Sbjct: 217 VKFVEFIGKVSPVRSRHDKQLVSHDPKSNNYNYKYTFSVEISPICREDLICLPPRVAVSL 276 Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339 C KVTN+I L+DPFTLRH F+DADQYWR F+SLL+ +QLVEYI Sbjct: 277 GNIGPLVICTKVTNSIALLDPFTLRHCFIDADQYWRTSFKSLLTSRQLVEYI 328 Score = 87.0 bits (214), Expect(2) = 4e-55 Identities = 40/47 (85%), Positives = 43/47 (91%) Frame = +2 Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523 AD QVA VSDFGKND IFNI+THLGHLLNPGDYALGYDLY AN+ND+ Sbjct: 349 ADAQVARVSDFGKNDTIFNIKTHLGHLLNPGDYALGYDLYGANSNDM 395