BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004778
         (542 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]   159   1e-56
ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3...   159   1e-56
ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|2...   165   9e-56
ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|2...   165   9e-56
ref|XP_003538383.1| PREDICTED: 60S ribosomal export protein NMD3...   153   4e-55

>emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]
          Length = 594

 Score =  159 bits (401), Expect(2) = 1e-56
 Identities = 73/112 (65%), Positives = 87/112 (77%)
 Frame = +1

Query: 4   LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183
           +KF+EF+GKV P +SR+DKQLVSHDTKSN+YNYK+TFSVEICP+CREDL+C         
Sbjct: 208 VKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTFSVEICPICREDLICLPPKVAVSL 267

Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339
                   C KV+NNI L+DPFTLRH FLDADQYWR  F++LLS +QLVEYI
Sbjct: 268 GNLGPVVICTKVSNNIALLDPFTLRHCFLDADQYWRSSFKALLSSRQLVEYI 319



 Score = 86.3 bits (212), Expect(2) = 1e-56
 Identities = 39/47 (82%), Positives = 43/47 (91%)
 Frame = +2

Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523
           AD QVA VSDFGKND IFNIRTHLGHLLNPGD+ALGYD+Y AN+ND+
Sbjct: 340 ADAQVARVSDFGKNDTIFNIRTHLGHLLNPGDHALGYDVYAANSNDM 386


>ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]
          Length = 510

 Score =  159 bits (401), Expect(2) = 1e-56
 Identities = 73/112 (65%), Positives = 87/112 (77%)
 Frame = +1

Query: 4   LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183
           +KF+EF+GKV P +SR+DKQLVSHDTKSN+YNYK+TFSVEICP+CREDL+C         
Sbjct: 208 VKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTFSVEICPICREDLICLPPKVAVSL 267

Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339
                   C KV+NNI L+DPFTLRH FLDADQYWR  F++LLS +QLVEYI
Sbjct: 268 GNLGPLVICTKVSNNIALLDPFTLRHCFLDADQYWRSSFKALLSSRQLVEYI 319



 Score = 86.3 bits (212), Expect(2) = 1e-56
 Identities = 39/47 (82%), Positives = 43/47 (91%)
 Frame = +2

Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523
           AD QVA VSDFGKND IFNIRTHLGHLLNPGD+ALGYD+Y AN+ND+
Sbjct: 340 ADAQVARVSDFGKNDTIFNIRTHLGHLLNPGDHALGYDVYAANSNDM 386


>ref|XP_002306035.1| predicted protein [Populus trichocarpa] gi|222848999|gb|EEE86546.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score =  165 bits (417), Expect(2) = 9e-56
 Identities = 76/112 (67%), Positives = 89/112 (79%)
 Frame = +1

Query: 4   LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183
           +KF++F+GKV P+KSRNDKQLVSHDTKSN+YNYKHTFSVEI P+CREDLVC         
Sbjct: 209 VKFVDFVGKVAPVKSRNDKQLVSHDTKSNNYNYKHTFSVEISPICREDLVCLPPRVAVSL 268

Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339
                   C+KVTN+I L+DPFTLRH FLDADQYWR PF+SLL+ +QLVEYI
Sbjct: 269 GNLGPLVICSKVTNSIALLDPFTLRHCFLDADQYWRTPFKSLLTSRQLVEYI 320



 Score = 77.4 bits (189), Expect(2) = 9e-56
 Identities = 34/47 (72%), Positives = 41/47 (87%)
 Frame = +2

Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523
           AD  VA +SDFGKND +FNI+THLGH+L PGDYALGYDL+ AN+ND+
Sbjct: 341 ADATVARMSDFGKNDTMFNIKTHLGHILKPGDYALGYDLHGANSNDM 387


>ref|XP_002305882.1| predicted protein [Populus trichocarpa] gi|222848846|gb|EEE86393.1|
           predicted protein [Populus trichocarpa]
          Length = 511

 Score =  165 bits (417), Expect(2) = 9e-56
 Identities = 76/112 (67%), Positives = 89/112 (79%)
 Frame = +1

Query: 4   LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183
           +KF++F+GKV P+KSRNDKQLVSHDTKSN+YNYKHTFSVEI P+CREDLVC         
Sbjct: 209 VKFVDFVGKVAPVKSRNDKQLVSHDTKSNNYNYKHTFSVEISPICREDLVCLPPRVAVSL 268

Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339
                   C+KVTN+I L+DPFTLRH FLDADQYWR PF+SLL+ +QLVEYI
Sbjct: 269 GNLGPLVICSKVTNSIALLDPFTLRHCFLDADQYWRTPFKSLLTSRQLVEYI 320



 Score = 77.4 bits (189), Expect(2) = 9e-56
 Identities = 34/47 (72%), Positives = 41/47 (87%)
 Frame = +2

Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523
           AD  VA +SDFGKND +FNI+THLGH+L PGDYALGYDL+ AN+ND+
Sbjct: 341 ADATVARMSDFGKNDTMFNIKTHLGHILKPGDYALGYDLHGANSNDM 387


>ref|XP_003538383.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max]
          Length = 510

 Score =  153 bits (386), Expect(2) = 4e-55
 Identities = 70/112 (62%), Positives = 86/112 (76%)
 Frame = +1

Query: 4   LKFLEFMGKVVPIKSRNDKQLVSHDTKSNDYNYKHTFSVEICPVCREDLVCXXXXXXXXX 183
           +KF+EF+GKV P++SR+DKQLVSHD KSN+YNYK+TFSVEI P+CREDL+C         
Sbjct: 217 VKFVEFIGKVSPVRSRHDKQLVSHDPKSNNYNYKYTFSVEISPICREDLICLPPRVAVSL 276

Query: 184 XXXXXXXXCAKVTNNIVLVDPFTLRHAFLDADQYWRLPFRSLLSCKQLVEYI 339
                   C KVTN+I L+DPFTLRH F+DADQYWR  F+SLL+ +QLVEYI
Sbjct: 277 GNIGPLVICTKVTNSIALLDPFTLRHCFIDADQYWRTSFKSLLTSRQLVEYI 328



 Score = 87.0 bits (214), Expect(2) = 4e-55
 Identities = 40/47 (85%), Positives = 43/47 (91%)
 Frame = +2

Query: 383 ADVQVACVSDFGKNDKIFNIRTHLGHLLNPGDYALGYDLYVANNNDI 523
           AD QVA VSDFGKND IFNI+THLGHLLNPGDYALGYDLY AN+ND+
Sbjct: 349 ADAQVARVSDFGKNDTIFNIKTHLGHLLNPGDYALGYDLYGANSNDM 395