BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004766
         (782 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263...   182   5e-44
ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putati...   172   6e-41
ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotei...   150   2e-34
emb|CBI32274.3| unnamed protein product [Vitis vinifera]              137   3e-30
ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|2...   132   6e-29

>ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263028 [Vitis vinifera]
           gi|363805533|sp|F6HQ26.1|RU1C_VITVI RecName: Full=U1
           small nuclear ribonucleoprotein C; Short=U1 snRNP C;
           Short=U1-C; Short=U1C
          Length = 213

 Score =  182 bits (463), Expect = 5e-44
 Identities = 103/206 (50%), Positives = 112/206 (54%), Gaps = 8/206 (3%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQ 247
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            SLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 248 TAAFQQVGAAYNQHLASF----XXXXXXXXXXXXXXXXGTAQGLMNS----GIXXXXXXX 403
           TAAFQQVGAAYNQHL SF                    G+A   MNS    G+       
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 404 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVNGLPRPPTMNPPLTMPGGTSTAVTNGLPS 583
                                         +N LPRPPTMN P  +PG TST  + G PS
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLPRPPTMNVPPAVPGSTSTPTSGGAPS 180

Query: 584 LVTQAVYQGNPTASGSGAFDSYNNNA 661
           ++TQ +YQ NP    SG FDS+N NA
Sbjct: 181 MMTQPMYQANPAGPTSGGFDSFNINA 206


>ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putative [Ricinus communis]
           gi|223540083|gb|EEF41660.1| U1 small nuclear
           ribonucleoprotein C, putative [Ricinus communis]
          Length = 206

 Score =  172 bits (437), Expect = 6e-41
 Identities = 101/207 (48%), Positives = 109/207 (52%), Gaps = 4/207 (1%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQ 247
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            SLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 248 TAAFQQVGAAYNQHLASFXXXXXXXXXXXXXXXXGTAQGLMNS----GIXXXXXXXXXXX 415
            AAFQQVGAAYNQHL                   G+AQ   N+    GI           
Sbjct: 61  AAAFQQVGAAYNQHL--LQRPRLPVLPTPMMPIPGSAQLPANTPLMPGIRPPPVLPRPVP 118

Query: 416 XXXXXXXXXXXXXXXXXXXXXXXXXQVNGLPRPPTMNPPLTMPGGTSTAVTNGLPSLVTQ 595
                                    QVNGLPRPP   PP T+PG  + A  +G PS+V  
Sbjct: 119 AAPGYMSSPAMPPMVAPPGAPSLPGQVNGLPRPPMSIPPATVPGSAAVAPPSGAPSMVPP 178

Query: 596 AVYQGNPTASGSGAFDSYNNNATPGLQ 676
           A YQ NP    S  FDS+NN  TP L+
Sbjct: 179 ASYQTNPAPPTSAGFDSFNN--TPNLE 203


>ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotein C-like [Cucumis
           sativus] gi|449491514|ref|XP_004158922.1| PREDICTED: U1
           small nuclear ribonucleoprotein C-like [Cucumis sativus]
          Length = 197

 Score =  150 bits (380), Expect = 2e-34
 Identities = 95/201 (47%), Positives = 102/201 (50%), Gaps = 1/201 (0%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQ 247
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            SLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 248 TAAFQQVGAAYNQHLASFXXXXXXXXXXXXXXXXGTAQGLMNSGIXXXXXXXXXXXXXXX 427
            AAFQQVGAA+NQHL                   G A GLM  GI               
Sbjct: 61  AAAFQQVGAAFNQHLLG---QRPRLPVLPTPVMPGAAPGLM-PGI--RPPVLPRPIPGAP 114

Query: 428 XXXXXXXXXXXXXXXXXXXXXQVNGLPRPPTMNPPLTMPGGT-STAVTNGLPSLVTQAVY 604
                                QVN   RPP   PP  +PG     + TNG P L   + Y
Sbjct: 115 GYLPTPTMPPMMAPPGAPIPGQVNIPSRPP---PPAPLPGSAPQPSSTNGAP-LAAPSTY 170

Query: 605 QGNPTASGSGAFDSYNNNATP 667
           Q NP A GSG +DS+ + A P
Sbjct: 171 QANPAAPGSGGYDSFTSMAQP 191


>emb|CBI32274.3| unnamed protein product [Vitis vinifera]
          Length = 190

 Score =  137 bits (345), Expect = 3e-30
 Identities = 65/78 (83%), Positives = 65/78 (83%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQ 247
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            SLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 248 TAAFQQVGAAYNQHLASF 301
           TAAFQQVGAAYNQHL SF
Sbjct: 61  TAAFQQVGAAYNQHLVSF 78


>ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|222841602|gb|EEE79149.1|
           predicted protein [Populus trichocarpa]
          Length = 202

 Score =  132 bits (333), Expect = 6e-29
 Identities = 62/75 (82%), Positives = 63/75 (84%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRXXXXXXXXXXXXSLIDQRIKEHLGQ 247
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR            S+IDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSIIDQRIKEHLGQ 60

Query: 248 TAAFQQVGAAYNQHL 292
           TAAFQQVGAAYNQHL
Sbjct: 61  TAAFQQVGAAYNQHL 75



 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 27/57 (47%), Positives = 35/57 (61%)
 Frame = +2

Query: 491 QVNGLPRPPTMNPPLTMPGGTSTAVTNGLPSLVTQAVYQGNPTASGSGAFDSYNNNA 661
           Q+NG+PRPPTM     +PG T+    +G PS+     YQ N  A+ SG FDS+N NA
Sbjct: 139 QMNGIPRPPTMIAQPNVPGSTAAPTPSGPPSMGPPVTYQANQAATTSGGFDSFNVNA 195