BLASTX nr result
ID: Coptis24_contig00004732
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004732
(668 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|2... 293 3e-77
ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containi... 291 1e-76
ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 282 4e-74
ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containi... 280 1e-73
ref|XP_002891080.1| pentatricopeptide repeat-containing protein ... 262 5e-68
>ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|222856179|gb|EEE93726.1|
predicted protein [Populus trichocarpa]
Length = 578
Score = 293 bits (749), Expect = 3e-77
Identities = 139/222 (62%), Positives = 169/222 (76%)
Frame = +3
Query: 3 RLFDEMGVRDIATWNALISGLAQGSRARDALELFKRMGFQGLKRNEVTVLGAPSACSHLG 182
++FDEM RDIA+WNALISG AQGS+ +AL LFKRM G K NE++VLGA SAC+ LG
Sbjct: 161 KVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLG 220
Query: 183 ALGEGEAVYSFVKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAMI 362
EGE ++ ++K D N QVCN VIDMYAKCG V+KA VF SM+C K +++WN MI
Sbjct: 221 DFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMI 280
Query: 363 MGFAMHGHGVDALELFNEMGRVGVVPDGITYLAALCACNHAGLVSDGLGLFRAMVDSGVR 542
M FAMHG G ALELF +M + GV PD ++YLA LCACNH GLV +G LF +M + GV+
Sbjct: 281 MAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVK 340
Query: 543 PNVKHFGSVVDLLGRAGRLEEAHQMITSMPMVPDVVLWQTLL 668
PNVKH+GSVVDLLGRAGRL EA+ ++ SMP VPD+VLWQTLL
Sbjct: 341 PNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLL 382
Score = 98.2 bits (243), Expect = 1e-18
Identities = 60/220 (27%), Positives = 103/220 (46%)
Frame = +3
Query: 9 FDEMGVRDIATWNALISGLAQGSRARDALELFKRMGFQGLKRNEVTVLGAPSACSHLGAL 188
F ++ WNA+I G Q +A +K M + K + +T AC+ + A
Sbjct: 62 FSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLAR 121
Query: 189 GEGEAVYSFVKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAMIMG 368
E +++ + G + + ++D+YAK G ++ A VF+ M + + SWNA+I G
Sbjct: 122 LESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEM-VKRDIASWNALISG 180
Query: 369 FAMHGHGVDALELFNEMGRVGVVPDGITYLAALCACNHAGLVSDGLGLFRAMVDSGVRPN 548
FA +AL LF M G P+ I+ L AL AC G +G + + N
Sbjct: 181 FAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMN 240
Query: 549 VKHFGSVVDLLGRAGRLEEAHQMITSMPMVPDVVLWQTLL 668
+ V+D+ + G +++A+ + SM D+V W T++
Sbjct: 241 AQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMI 280
Score = 72.0 bits (175), Expect = 1e-10
Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 6 LFDEMGVR-DIATWNALISGLAQGSRARDALELFKRMGFQGLKRNEVTVLGAPSACSHLG 182
+F+ M R DI TWN +I A ALELF++M G+ ++V+ L AC+H G
Sbjct: 263 VFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGG 322
Query: 183 ALGEGEAVYSFVKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAMI 362
+ EG +++ ++ G+ NV+ +V+D+ + G + +A ++ NSM ++ W ++
Sbjct: 323 LVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLL 382
Query: 363 MGFAMH 380
H
Sbjct: 383 GASRTH 388
>ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Vitis vinifera]
Length = 573
Score = 291 bits (744), Expect = 1e-76
Identities = 143/222 (64%), Positives = 175/222 (78%)
Frame = +3
Query: 3 RLFDEMGVRDIATWNALISGLAQGSRARDALELFKRMGFQGLKRNEVTVLGAPSACSHLG 182
R+FDE+ +RD+A WNALI+GLAQGS++ +AL LF RM +G K NE++VLGA +ACS LG
Sbjct: 156 RVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLG 215
Query: 183 ALGEGEAVYSFVKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAMI 362
AL GE V++ V++ LD NVQVCNAVIDMYAKCG +K VF++M C KS+++WN MI
Sbjct: 216 ALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMI 275
Query: 363 MGFAMHGHGVDALELFNEMGRVGVVPDGITYLAALCACNHAGLVSDGLGLFRAMVDSGVR 542
M FAMHG G ALELF EMG+ V D +TYLA LCACNHAGLV +G+ LF MV GV
Sbjct: 276 MAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVN 335
Query: 543 PNVKHFGSVVDLLGRAGRLEEAHQMITSMPMVPDVVLWQTLL 668
NVKH+GSVVDLLGRAGRL EA+++I SMP+VPDVVLWQ+LL
Sbjct: 336 RNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLL 377
Score = 92.8 bits (229), Expect = 5e-17
Identities = 59/209 (28%), Positives = 104/209 (49%)
Frame = +3
Query: 42 WNALISGLAQGSRARDALELFKRMGFQGLKRNEVTVLGAPSACSHLGALGEGEAVYSFVK 221
+NAL+ GLA+G AL + L + +T + A + AL E ++S +
Sbjct: 72 FNALLRGLARGPHPTHALTFLSTI----LHPDALTFSFSLIASARALALSETSQIHSHLL 127
Query: 222 ENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAMIMGFAMHGHGVDAL 401
G ++ + +ID YAKCG ++ A+ VF+ + + + +WNA+I G A +AL
Sbjct: 128 RRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPL-RDVAAWNALIAGLAQGSKSSEAL 186
Query: 402 ELFNEMGRVGVVPDGITYLAALCACNHAGLVSDGLGLFRAMVDSGVRPNVKHFGSVVDLL 581
LFN M G + I+ L AL AC+ G + G G+ + + NV+ +V+D+
Sbjct: 187 ALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMY 246
Query: 582 GRAGRLEEAHQMITSMPMVPDVVLWQTLL 668
+ G ++ ++ ++M VV W T++
Sbjct: 247 AKCGFADKGFRVFSTMTCGKSVVTWNTMI 275
Score = 67.4 bits (163), Expect = 2e-09
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 1/129 (0%)
Frame = +3
Query: 3 RLFDEMGV-RDIATWNALISGLAQGSRARDALELFKRMGFQGLKRNEVTVLGAPSACSHL 179
R+F M + + TWN +I A ALELF+ MG ++ + VT L AC+H
Sbjct: 257 RVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHA 316
Query: 180 GALGEGEAVYSFVKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAM 359
G + EG ++ + G++ NV+ +V+D+ + G + +A + NSM ++ W ++
Sbjct: 317 GLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSL 376
Query: 360 IMGFAMHGH 386
+ +G+
Sbjct: 377 LGACKTYGN 385
>ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 282 bits (722), Expect = 4e-74
Identities = 139/223 (62%), Positives = 172/223 (77%), Gaps = 1/223 (0%)
Frame = +3
Query: 3 RLFDEMGVRDIATWNALISGLAQGSRARDALELFKRMGFQG-LKRNEVTVLGAPSACSHL 179
+LFDEM DIA+WNALI+G AQGSR DA+ FKRM G L+ N VTV GA ACS L
Sbjct: 159 KLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQL 218
Query: 180 GALGEGEAVYSFVKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAM 359
GAL EGE+V+ ++ E LD NVQVCN VIDMYAKCG ++KA VF +M C KSL++WN M
Sbjct: 219 GALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTM 278
Query: 360 IMGFAMHGHGVDALELFNEMGRVGVVPDGITYLAALCACNHAGLVSDGLGLFRAMVDSGV 539
IM FAMHG G AL+LF ++GR G+ PD ++YLA LCACNHAGLV DGL LF +M G+
Sbjct: 279 IMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGL 338
Query: 540 RPNVKHFGSVVDLLGRAGRLEEAHQMITSMPMVPDVVLWQTLL 668
PN+KH+GS+VDLLGRAGRL+EA+ +++S+P P++VLWQTLL
Sbjct: 339 EPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLL 380
Score = 93.2 bits (230), Expect = 4e-17
Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 3/212 (1%)
Frame = +3
Query: 42 WNALISGLAQGSRARDALELFKRMGFQ-GLKR-NEVTVLGAPSACSHLGALGEGEAVYSF 215
WNA+I G A S +A+ ++ M GL R + +T A AC+ A E ++S
Sbjct: 69 WNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQ 128
Query: 216 VKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAMIMGFAMHGHGVD 395
+ G + +V + ++D YAK G ++ A+ +F+ M + SWNA+I GFA D
Sbjct: 129 LLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMP-QPDIASWNALIAGFAQGSRPAD 187
Query: 396 ALELFNEMGRVG-VVPDGITYLAALCACNHAGLVSDGLGLFRAMVDSGVRPNVKHFGSVV 572
A+ F M G + P+ +T AL AC+ G + +G + + +V+ + NV+ V+
Sbjct: 188 AIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVI 247
Query: 573 DLLGRAGRLEEAHQMITSMPMVPDVVLWQTLL 668
D+ + G +++A+ + +M ++ W T++
Sbjct: 248 DMYAKCGSMDKAYWVFENMRCDKSLITWNTMI 279
>ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 280 bits (717), Expect = 1e-73
Identities = 138/223 (61%), Positives = 172/223 (77%), Gaps = 1/223 (0%)
Frame = +3
Query: 3 RLFDEMGVRDIATWNALISGLAQGSRARDALELFKRMGFQG-LKRNEVTVLGAPSACSHL 179
+LFDEM DIA+WNALI+G AQGSR DA+ FKRM G L+ N VTV GA ACS L
Sbjct: 159 KLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQL 218
Query: 180 GALGEGEAVYSFVKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAM 359
GAL EGE+V+ ++ E L+ NVQVCN VIDMYAKCG ++KA VF +M C KSL++WN M
Sbjct: 219 GALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTM 278
Query: 360 IMGFAMHGHGVDALELFNEMGRVGVVPDGITYLAALCACNHAGLVSDGLGLFRAMVDSGV 539
IM FAMHG G AL+LF ++GR G+ PD ++YLA LCACNHAGLV DGL LF +M G+
Sbjct: 279 IMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGL 338
Query: 540 RPNVKHFGSVVDLLGRAGRLEEAHQMITSMPMVPDVVLWQTLL 668
PN+KH+GS+VDLLGRAGRL+EA+ +++S+P P++VLWQTLL
Sbjct: 339 EPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVLWQTLL 380
Score = 94.0 bits (232), Expect = 2e-17
Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 3/212 (1%)
Frame = +3
Query: 42 WNALISGLAQGSRARDALELFKRMGFQ-GLKR-NEVTVLGAPSACSHLGALGEGEAVYSF 215
WNA+I G A S +A+ ++ M GL R + +T A AC+ A E ++S
Sbjct: 69 WNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQ 128
Query: 216 VKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAMIMGFAMHGHGVD 395
+ G + +V + ++D YAK G ++ A+ +F+ M + SWNA+I GFA D
Sbjct: 129 LLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMP-QPDIASWNALIAGFAQGSRPAD 187
Query: 396 ALELFNEMGRVG-VVPDGITYLAALCACNHAGLVSDGLGLFRAMVDSGVRPNVKHFGSVV 572
A+ F M G + P+ +T AL AC+ G + +G + + +V+ + NV+ V+
Sbjct: 188 AIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVI 247
Query: 573 DLLGRAGRLEEAHQMITSMPMVPDVVLWQTLL 668
D+ + G +++A+ + +M ++ W T++
Sbjct: 248 DMYAKCGSMDKAYWVFENMRCDKSLITWNTMI 279
>ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297336922|gb|EFH67339.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 562
Score = 262 bits (669), Expect = 5e-68
Identities = 127/223 (56%), Positives = 165/223 (73%), Gaps = 1/223 (0%)
Frame = +3
Query: 3 RLFDEMGVRDIATWNALISGLAQGSRARDALELFKRMGFQGLKRNEVTVLGAPSACSHLG 182
+LFDEM VRD+A+WNALI+GL G+RA +ALEL+KRM +G++R+EVTV+ A ACSHLG
Sbjct: 164 KLFDEMSVRDVASWNALIAGLVAGNRASEALELYKRMEMEGIRRSEVTVVAALGACSHLG 223
Query: 183 ALGEGEAV-YSFVKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAM 359
+ EGE + + ++K+ LD NV V NAVIDMY+KCG V+KA VF KS+++WN M
Sbjct: 224 DVKEGEKILHGYIKDEKLDHNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGKKSVVTWNTM 283
Query: 360 IMGFAMHGHGVDALELFNEMGRVGVVPDGITYLAALCACNHAGLVSDGLGLFRAMVDSGV 539
I GF++HG ALE+F ++ G+ PD ++YLAAL AC H GLV G+ +F M +GV
Sbjct: 284 ITGFSVHGEAHRALEIFEKLEHNGIKPDDVSYLAALTACRHTGLVEYGISIFNNMACNGV 343
Query: 540 RPNVKHFGSVVDLLGRAGRLEEAHQMITSMPMVPDVVLWQTLL 668
PN+KH+G VVDLL RAGRL EAH +I SM MVPD VLWQ+LL
Sbjct: 344 EPNMKHYGCVVDLLSRAGRLREAHDIICSMSMVPDPVLWQSLL 386
Score = 76.6 bits (187), Expect = 4e-12
Identities = 44/167 (26%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Frame = +3
Query: 21 GVRDIATWNALISGLAQGSRARDALELFKRMGFQGLKRNEVTVLGAPSACSHLGALGEGE 200
G + + TWN +I+G + A ALE+F+++ G+K ++V+ L A +AC H G + G
Sbjct: 273 GKKSVVTWNTMITGFSVHGEAHRALEIFEKLEHNGIKPDDVSYLAALTACRHTGLVEYGI 332
Query: 201 AVYSFVKENGLDGNVQVCNAVIDMYAKCGLVEKARNVFNSMNCSKSLLSWNAMIMGFAMH 380
++++ + NG++ N++ V+D+ ++ G + +A ++ SM+ + W +++ +H
Sbjct: 333 SIFNNMACNGVEPNMKHYGCVVDLLSRAGRLREAHDIICSMSMVPDPVLWQSLLGASEIH 392
Query: 381 GHGVDALELFNEMGRVGVVPDGITYL-----AALCACNHAGLVSDGL 506
+ A ++ +GV DG L AA GLV D +
Sbjct: 393 NNVEMAEIASRKIKEMGVNNDGDFVLLSNVYAAQGRWKDVGLVRDDM 439