BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004682
         (1541 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35920.3| unnamed protein product [Vitis vinifera]              224   5e-56
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   224   5e-56
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   201   4e-49
ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|2...   197   6e-48
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep...   194   7e-47

>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  224 bits (571), Expect = 5e-56
 Identities = 125/265 (47%), Positives = 171/265 (64%), Gaps = 7/265 (2%)
 Frame = +1

Query: 766  LVKENPEKIAPIVGYFPSGYNCSS----EEKNGPSVSVYTKKPR--RVQVVVSPNQDSNI 927
            +V E+PEKI P+VGYFPSG++       E    P+V V+  K R  R+Q+VVSPN DS +
Sbjct: 3    VVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPN-DSKV 61

Query: 928  EFFGSTHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRVKGLNSDEKKLPK 1107
             F G+++ GE    Q+CTYALGVLD++T TLKIVPIASNKI RLEPRV G ++   + P 
Sbjct: 62   NFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDE-PS 120

Query: 1108 ESIEEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXXEKSAPKGQAVID-KIDGVKI 1284
              ++ + T  EK  + R +LT ++G+              +K  P+ Q  +D K+  V I
Sbjct: 121  SLLKGEQTAEEKAGRMR-DLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKEVVI 179

Query: 1285 NKKALETTVGIHSRNIPPHDTIAVTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPD 1464
            NK+ALE+T    +RNIPP+D  A TP+ AY LD+II   EWD+LLDIL+ +Q+G ++   
Sbjct: 180  NKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVESS 239

Query: 1465 AYPSYVCNRIDKLMEIKDEEEKKKL 1539
            AY S+VCNRI KL E++DE EK  L
Sbjct: 240  AYSSFVCNRIQKLKELEDEGEKTTL 264


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
            vinifera]
          Length = 421

 Score =  224 bits (571), Expect = 5e-56
 Identities = 125/265 (47%), Positives = 171/265 (64%), Gaps = 7/265 (2%)
 Frame = +1

Query: 766  LVKENPEKIAPIVGYFPSGYNCSS----EEKNGPSVSVYTKKPR--RVQVVVSPNQDSNI 927
            +V E+PEKI P+VGYFPSG++       E    P+V V+  K R  R+Q+VVSPN DS +
Sbjct: 33   VVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPN-DSKV 91

Query: 928  EFFGSTHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRVKGLNSDEKKLPK 1107
             F G+++ GE    Q+CTYALGVLD++T TLKIVPIASNKI RLEPRV G ++   + P 
Sbjct: 92   NFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDE-PS 150

Query: 1108 ESIEEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXXEKSAPKGQAVID-KIDGVKI 1284
              ++ + T  EK  + R +LT ++G+              +K  P+ Q  +D K+  V I
Sbjct: 151  SLLKGEQTAEEKAGRMR-DLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKEVVI 209

Query: 1285 NKKALETTVGIHSRNIPPHDTIAVTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPD 1464
            NK+ALE+T    +RNIPP+D  A TP+ AY LD+II   EWD+LLDIL+ +Q+G ++   
Sbjct: 210  NKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVESS 269

Query: 1465 AYPSYVCNRIDKLMEIKDEEEKKKL 1539
            AY S+VCNRI KL E++DE EK  L
Sbjct: 270  AYSSFVCNRIQKLKELEDEGEKTTL 294


>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Glycine
            max]
          Length = 424

 Score =  201 bits (511), Expect = 4e-49
 Identities = 114/262 (43%), Positives = 162/262 (61%), Gaps = 4/262 (1%)
 Frame = +1

Query: 766  LVKENPEKIAPIVGYFPSGYNCSSEEKNGPS---VSVYTKKPRRVQVVVSPNQDSNIEFF 936
            +V+E+P K  P+VGYFPSG++       GPS   V  +   P+R+++VV P + S++EF 
Sbjct: 42   VVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPPR-SSVEFV 100

Query: 937  GSTHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRVKGLNSDEKKLPKESI 1116
            G+++ GE        YALGVLD++  TLK+VPIA NKI RLEP+VKG+ + E + P  S 
Sbjct: 101  GTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFENE-PANST 159

Query: 1117 EEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXXEKSAPKGQAVID-KIDGVKINKK 1293
             E++T      QK  E T+++G+              +   P  Q  +D K+  V +NKK
Sbjct: 160  LEEMT----QQQKFAETTSIWGTKKDIEKAKKKLALRQDEDPDSQRNLDVKMKSVTVNKK 215

Query: 1294 ALETTVGIHSRNIPPHDTIAVTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPDAYP 1473
            ALE+T    SRNIPP+D  A TP+ AY LD+IIL  EWD+L DI  ++Q G +    AYP
Sbjct: 216  ALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEEADFSAYP 275

Query: 1474 SYVCNRIDKLMEIKDEEEKKKL 1539
            ++V NRI++L +IKDE EKK+L
Sbjct: 276  TFVRNRIERLRKIKDESEKKQL 297


>ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|222839699|gb|EEE78022.1|
            predicted protein [Populus trichocarpa]
          Length = 472

 Score =  197 bits (501), Expect = 6e-48
 Identities = 118/289 (40%), Positives = 164/289 (56%), Gaps = 31/289 (10%)
 Frame = +1

Query: 766  LVKENPEKIAPIVGYFPSGYNCSSEEKNG------------PSVSVYTKKPR-------- 885
            LV    +K  P+VGYFPSGYN                    PSV +Y    R        
Sbjct: 60   LVNNQVDKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAAPPSVKLYRNAQRAKVEKSSG 119

Query: 886  ----------RVQVVVSPNQDSNIEFFGSTHEGEGPDCQICTYALGVLDRDTHTLKIVPI 1035
                      R+++VVSPN  SN+EF G++++GE    Q+CTYALGVLD+ T TLKI+PI
Sbjct: 120  EKNEKGRTSERLELVVSPN-GSNVEFVGNSYKGEAMAAQLCTYALGVLDKATQTLKIMPI 178

Query: 1036 ASNKILRLEPRVKGLNSDEKKLPKESIEEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXX 1215
            A NKILRLEP+++G  + +K+    + E     AE+   +  +L   +G           
Sbjct: 179  AGNKILRLEPKLRGSLAADKE--HANFENGEITAEQRAARIRQLNVQYGPKKSIIQDKKM 236

Query: 1216 XXXXEKSAPKGQAVID-KIDGVKINKKALETTVGIHSRNIPPHDTIAVTPERAYPLDQII 1392
                +   P  Q  +  KI+   INK ALE+T G  +RNIPP+++ A+TP+ AYPLD II
Sbjct: 237  QALRKGDDPLSQKDLGRKIENAPINKDALESTSGHSARNIPPYNSSAITPQEAYPLDGII 296

Query: 1393 LSAEWDHLLDILEHMQSGTKISPDAYPSYVCNRIDKLMEIKDEEEKKKL 1539
            L+ EWD L DI + +Q G +++ +AYP++VCNRI KL EI+DE EKK+L
Sbjct: 297  LTGEWDFLEDIYKILQVGGEVASNAYPTFVCNRIQKLREIQDEVEKKRL 345


>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
            communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
            polymerase I 49 kDa polypeptide, putative [Ricinus
            communis]
          Length = 481

 Score =  194 bits (492), Expect = 7e-47
 Identities = 118/292 (40%), Positives = 167/292 (57%), Gaps = 36/292 (12%)
 Frame = +1

Query: 766  LVKENPEKIAPIVGYFPSGYNCS-----------SEEKNG------PSVSVYTKKPR--- 885
            ++ +  +K  PIVGYFPSGY  S           S E+N       PSV  Y    R   
Sbjct: 64   VIYDQTDKTPPIVGYFPSGYKPSKHNESNNLHDTSNEENATSSLSQPSVKFYRNAQRTKI 123

Query: 886  ---------------RVQVVVSPNQDSNIEFFGSTHEGEGPDCQICTYALGVLDRDTHTL 1020
                           R+++VVSPN  SN++F G +++GE    Q+CTYALGVLD+ T TL
Sbjct: 124  EKSSNERNEKWRSSERMELVVSPN-GSNVDFVGKSYKGEATAAQLCTYALGVLDKKTKTL 182

Query: 1021 KIVPIASNKILRLEPRVKGLNSDEKKLPKESIEEDVTPAEKDHQKRIELTTVFGSXXXXX 1200
            KI+PIA NKI RLEP+++G+++ +K+ P     ED++      +K+  LT  +G+     
Sbjct: 183  KIMPIAGNKIFRLEPKIQGVDASDKE-PSVLENEDLSKENMAVRKKT-LTDTYGTKKSIT 240

Query: 1201 XXXXXXXXXEKSAPKGQAVID-KIDGVKINKKALETTVGIHSRNIPPHDTIAVTPERAYP 1377
                     +   P+ +  +D KID V +NK ALE T    +RNIPPH+T A TP+ AYP
Sbjct: 241  QGKRMEIMMQGDNPESRKDLDQKIDNVVVNKAALEDTSAHVARNIPPHNTSATTPQEAYP 300

Query: 1378 LDQIILSAEWDHLLDILEHMQSGTKISPDAYPSYVCNRIDKLMEIKDEEEKK 1533
            L +IIL+ EWD+L D+ E +Q+G   + +AYP +V NRI KL EI+DE E+K
Sbjct: 301  LGRIILTGEWDYLEDLYEILQAGEGAAINAYPVFVRNRIHKLREIQDEVERK 352