BLASTX nr result
ID: Coptis24_contig00004682
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004682 (1541 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI35920.3| unnamed protein product [Vitis vinifera] 224 5e-56 ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub... 224 5e-56 ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub... 201 4e-49 ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|2... 197 6e-48 ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep... 194 7e-47 >emb|CBI35920.3| unnamed protein product [Vitis vinifera] Length = 391 Score = 224 bits (571), Expect = 5e-56 Identities = 125/265 (47%), Positives = 171/265 (64%), Gaps = 7/265 (2%) Frame = +1 Query: 766 LVKENPEKIAPIVGYFPSGYNCSS----EEKNGPSVSVYTKKPR--RVQVVVSPNQDSNI 927 +V E+PEKI P+VGYFPSG++ E P+V V+ K R R+Q+VVSPN DS + Sbjct: 3 VVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPN-DSKV 61 Query: 928 EFFGSTHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRVKGLNSDEKKLPK 1107 F G+++ GE Q+CTYALGVLD++T TLKIVPIASNKI RLEPRV G ++ + P Sbjct: 62 NFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDE-PS 120 Query: 1108 ESIEEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXXEKSAPKGQAVID-KIDGVKI 1284 ++ + T EK + R +LT ++G+ +K P+ Q +D K+ V I Sbjct: 121 SLLKGEQTAEEKAGRMR-DLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKEVVI 179 Query: 1285 NKKALETTVGIHSRNIPPHDTIAVTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPD 1464 NK+ALE+T +RNIPP+D A TP+ AY LD+II EWD+LLDIL+ +Q+G ++ Sbjct: 180 NKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVESS 239 Query: 1465 AYPSYVCNRIDKLMEIKDEEEKKKL 1539 AY S+VCNRI KL E++DE EK L Sbjct: 240 AYSSFVCNRIQKLKELEDEGEKTTL 264 >ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis vinifera] Length = 421 Score = 224 bits (571), Expect = 5e-56 Identities = 125/265 (47%), Positives = 171/265 (64%), Gaps = 7/265 (2%) Frame = +1 Query: 766 LVKENPEKIAPIVGYFPSGYNCSS----EEKNGPSVSVYTKKPR--RVQVVVSPNQDSNI 927 +V E+PEKI P+VGYFPSG++ E P+V V+ K R R+Q+VVSPN DS + Sbjct: 33 VVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPN-DSKV 91 Query: 928 EFFGSTHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRVKGLNSDEKKLPK 1107 F G+++ GE Q+CTYALGVLD++T TLKIVPIASNKI RLEPRV G ++ + P Sbjct: 92 NFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDE-PS 150 Query: 1108 ESIEEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXXEKSAPKGQAVID-KIDGVKI 1284 ++ + T EK + R +LT ++G+ +K P+ Q +D K+ V I Sbjct: 151 SLLKGEQTAEEKAGRMR-DLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKEVVI 209 Query: 1285 NKKALETTVGIHSRNIPPHDTIAVTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPD 1464 NK+ALE+T +RNIPP+D A TP+ AY LD+II EWD+LLDIL+ +Q+G ++ Sbjct: 210 NKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVESS 269 Query: 1465 AYPSYVCNRIDKLMEIKDEEEKKKL 1539 AY S+VCNRI KL E++DE EK L Sbjct: 270 AYSSFVCNRIQKLKELEDEGEKTTL 294 >ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Glycine max] Length = 424 Score = 201 bits (511), Expect = 4e-49 Identities = 114/262 (43%), Positives = 162/262 (61%), Gaps = 4/262 (1%) Frame = +1 Query: 766 LVKENPEKIAPIVGYFPSGYNCSSEEKNGPS---VSVYTKKPRRVQVVVSPNQDSNIEFF 936 +V+E+P K P+VGYFPSG++ GPS V + P+R+++VV P + S++EF Sbjct: 42 VVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVVRPPR-SSVEFV 100 Query: 937 GSTHEGEGPDCQICTYALGVLDRDTHTLKIVPIASNKILRLEPRVKGLNSDEKKLPKESI 1116 G+++ GE YALGVLD++ TLK+VPIA NKI RLEP+VKG+ + E + P S Sbjct: 101 GTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKVKGVGAFENE-PANST 159 Query: 1117 EEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXXXXXXEKSAPKGQAVID-KIDGVKINKK 1293 E++T QK E T+++G+ + P Q +D K+ V +NKK Sbjct: 160 LEEMT----QQQKFAETTSIWGTKKDIEKAKKKLALRQDEDPDSQRNLDVKMKSVTVNKK 215 Query: 1294 ALETTVGIHSRNIPPHDTIAVTPERAYPLDQIILSAEWDHLLDILEHMQSGTKISPDAYP 1473 ALE+T SRNIPP+D A TP+ AY LD+IIL EWD+L DI ++Q G + AYP Sbjct: 216 ALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNNLQRGEEADFSAYP 275 Query: 1474 SYVCNRIDKLMEIKDEEEKKKL 1539 ++V NRI++L +IKDE EKK+L Sbjct: 276 TFVRNRIERLRKIKDESEKKQL 297 >ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|222839699|gb|EEE78022.1| predicted protein [Populus trichocarpa] Length = 472 Score = 197 bits (501), Expect = 6e-48 Identities = 118/289 (40%), Positives = 164/289 (56%), Gaps = 31/289 (10%) Frame = +1 Query: 766 LVKENPEKIAPIVGYFPSGYNCSSEEKNG------------PSVSVYTKKPR-------- 885 LV +K P+VGYFPSGYN PSV +Y R Sbjct: 60 LVNNQVDKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAAPPSVKLYRNAQRAKVEKSSG 119 Query: 886 ----------RVQVVVSPNQDSNIEFFGSTHEGEGPDCQICTYALGVLDRDTHTLKIVPI 1035 R+++VVSPN SN+EF G++++GE Q+CTYALGVLD+ T TLKI+PI Sbjct: 120 EKNEKGRTSERLELVVSPN-GSNVEFVGNSYKGEAMAAQLCTYALGVLDKATQTLKIMPI 178 Query: 1036 ASNKILRLEPRVKGLNSDEKKLPKESIEEDVTPAEKDHQKRIELTTVFGSXXXXXXXXXX 1215 A NKILRLEP+++G + +K+ + E AE+ + +L +G Sbjct: 179 AGNKILRLEPKLRGSLAADKE--HANFENGEITAEQRAARIRQLNVQYGPKKSIIQDKKM 236 Query: 1216 XXXXEKSAPKGQAVID-KIDGVKINKKALETTVGIHSRNIPPHDTIAVTPERAYPLDQII 1392 + P Q + KI+ INK ALE+T G +RNIPP+++ A+TP+ AYPLD II Sbjct: 237 QALRKGDDPLSQKDLGRKIENAPINKDALESTSGHSARNIPPYNSSAITPQEAYPLDGII 296 Query: 1393 LSAEWDHLLDILEHMQSGTKISPDAYPSYVCNRIDKLMEIKDEEEKKKL 1539 L+ EWD L DI + +Q G +++ +AYP++VCNRI KL EI+DE EKK+L Sbjct: 297 LTGEWDFLEDIYKILQVGGEVASNAYPTFVCNRIQKLREIQDEVEKKRL 345 >ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis] Length = 481 Score = 194 bits (492), Expect = 7e-47 Identities = 118/292 (40%), Positives = 167/292 (57%), Gaps = 36/292 (12%) Frame = +1 Query: 766 LVKENPEKIAPIVGYFPSGYNCS-----------SEEKNG------PSVSVYTKKPR--- 885 ++ + +K PIVGYFPSGY S S E+N PSV Y R Sbjct: 64 VIYDQTDKTPPIVGYFPSGYKPSKHNESNNLHDTSNEENATSSLSQPSVKFYRNAQRTKI 123 Query: 886 ---------------RVQVVVSPNQDSNIEFFGSTHEGEGPDCQICTYALGVLDRDTHTL 1020 R+++VVSPN SN++F G +++GE Q+CTYALGVLD+ T TL Sbjct: 124 EKSSNERNEKWRSSERMELVVSPN-GSNVDFVGKSYKGEATAAQLCTYALGVLDKKTKTL 182 Query: 1021 KIVPIASNKILRLEPRVKGLNSDEKKLPKESIEEDVTPAEKDHQKRIELTTVFGSXXXXX 1200 KI+PIA NKI RLEP+++G+++ +K+ P ED++ +K+ LT +G+ Sbjct: 183 KIMPIAGNKIFRLEPKIQGVDASDKE-PSVLENEDLSKENMAVRKKT-LTDTYGTKKSIT 240 Query: 1201 XXXXXXXXXEKSAPKGQAVID-KIDGVKINKKALETTVGIHSRNIPPHDTIAVTPERAYP 1377 + P+ + +D KID V +NK ALE T +RNIPPH+T A TP+ AYP Sbjct: 241 QGKRMEIMMQGDNPESRKDLDQKIDNVVVNKAALEDTSAHVARNIPPHNTSATTPQEAYP 300 Query: 1378 LDQIILSAEWDHLLDILEHMQSGTKISPDAYPSYVCNRIDKLMEIKDEEEKK 1533 L +IIL+ EWD+L D+ E +Q+G + +AYP +V NRI KL EI+DE E+K Sbjct: 301 LGRIILTGEWDYLEDLYEILQAGEGAAINAYPVFVRNRIHKLREIQDEVERK 352