BLASTX nr result
ID: Coptis24_contig00004657
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004657 (1588 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 292 2e-99 ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me... 284 8e-98 gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 294 2e-97 ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 300 4e-97 gb|ACQ99756.1| RNA polymerase IV, partial [Heliosperma oliverae] 283 9e-97 >ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis] gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis] Length = 1203 Score = 292 bits (747), Expect(2) = 2e-99 Identities = 147/181 (81%), Positives = 160/181 (88%), Gaps = 1/181 (0%) Frame = +3 Query: 837 LSHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIYNGQNAIVAVNVHQGYNQEDS 1013 LSHQLYYPQRPLFRTV SDCLGKP G N + P E+YNGQNAIVAVNVH GYNQEDS Sbjct: 769 LSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDS 828 Query: 1014 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1193 LVMNRASLERGMFR+EHIR YKA+V+NKE+L+ KR K D ++FGK+PSKIGRVDSLDDD Sbjct: 829 LVMNRASLERGMFRSEHIRSYKADVDNKELLD-KRRKYDDNVNFGKIPSKIGRVDSLDDD 887 Query: 1194 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1373 GFPFIGANLQSGDIVIG+CAESG DHSIKLKHTERG VQKV+LS+NDEG NFA VSLRQV Sbjct: 888 GFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQV 947 Query: 1374 R 1376 R Sbjct: 948 R 948 Score = 99.0 bits (245), Expect(2) = 2e-99 Identities = 46/52 (88%), Positives = 49/52 (94%) Frame = +2 Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588 VSLRQVRSP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPH+F Sbjct: 942 VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSF 993 Score = 291 bits (745), Expect = 3e-76 Identities = 145/236 (61%), Positives = 173/236 (73%), Gaps = 6/236 (2%) Frame = +1 Query: 1 MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 180 M D+RKTR HVQY+GKVGDARFPHPSHWG++CFLST DGENCGLVKN+A TG+VS N+++ Sbjct: 510 MVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILE 569 Query: 181 PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVNTLKRKRRSKEVPP 360 PL+ L+ GMEK + K+K+FL+GEWVGVC DS V L+R RR K++P Sbjct: 570 PLIDKLIARGMEKVPEDSHSDLDE-KDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQ 628 Query: 361 QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG-YNIHSLMNKXXXXXXXXX 537 QVEIKRD+QQ+EVRIF+D+GRILRPLLVV+NL KI KGG SL++K Sbjct: 629 QVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTE 688 Query: 538 XXXDCQTAWGVKYLFS-----EEKVYTHCELDPSFLLGLSCGIIPFTNHDHARRAL 690 DC TAWG+K+L S + YTHCELD SFLLGLSCGIIPF NHDHARR L Sbjct: 689 EEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVL 744 >ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula] gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula] Length = 1237 Score = 284 bits (727), Expect(2) = 8e-98 Identities = 141/180 (78%), Positives = 157/180 (87%) Frame = +3 Query: 837 LSHQLYYPQRPLFRTVISDCLGKPEYPLGKNVHPMSEIYNGQNAIVAVNVHQGYNQEDSL 1016 LSHQL+YPQRPLF+T+ SDCLGKP Y V P SE YNGQNAIVAVNVH GYNQEDSL Sbjct: 804 LSHQLFYPQRPLFQTMTSDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYNQEDSL 863 Query: 1017 VMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDG 1196 VMNRASL+RGMFR+EHIR YKAE+ENKE E KR K +D ++FGK+ SKIGRVDSLDDDG Sbjct: 864 VMNRASLQRGMFRSEHIRSYKAEIENKESSE-KRKKPEDIVNFGKIQSKIGRVDSLDDDG 922 Query: 1197 FPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQVR 1376 FPF+GANLQSGDI+IG+CA+SG DHSIKLKHTERG VQKV+LS+NDEG NFA VSLRQVR Sbjct: 923 FPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVR 982 Score = 101 bits (251), Expect(2) = 8e-98 Identities = 47/52 (90%), Positives = 50/52 (96%) Frame = +2 Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588 VSLRQVRSP++GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAF Sbjct: 976 VSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAF 1027 Score = 271 bits (692), Expect = 5e-70 Identities = 136/235 (57%), Positives = 170/235 (72%), Gaps = 5/235 (2%) Frame = +1 Query: 1 MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 180 M ++R+TRQ VQY+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN+A+TG+VST++ + Sbjct: 546 MAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTDVTE 605 Query: 181 PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVNTLKRKRRSKEVPP 360 +L L CGME+ K K+K+FL+G+WVGVC DS+S V L+ +RR E+P Sbjct: 606 SILPQLSDCGMEELVDDTTTVLGK-KDKVFLNGDWVGVCSDSISFVAELRTRRRRNELPH 664 Query: 361 QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGGY-NIHSLMNKXXXXXXXXX 537 QVEIKRDQ Q+EVRI +D+GRILRPLLVV NL KI K + + SL++ Sbjct: 665 QVEIKRDQCQQEVRILSDAGRILRPLLVVSNLLKIKGSKSEHKSFQSLLDNGVIELIGPE 724 Query: 538 XXXDCQTAWGVKYLFSEE----KVYTHCELDPSFLLGLSCGIIPFTNHDHARRAL 690 D +TAWGV+YLF +E YTHCELD SFLLGLSC ++PF NHDHARR L Sbjct: 725 EEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVL 779 >gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum] Length = 1019 Score = 287 bits (734), Expect(2) = 2e-97 Identities = 142/180 (78%), Positives = 161/180 (89%), Gaps = 1/180 (0%) Frame = +3 Query: 840 SHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIYNGQNAIVAVNVHQGYNQEDSL 1016 +HQLYYPQRPLFRT++SDCLGKP YPLG N + P +E +NGQ AIVAVNVH GYNQEDSL Sbjct: 586 THQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSL 645 Query: 1017 VMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDG 1196 VMNRASLERGMFR+EHIR YKA+V+NKE + K+ K +D ++FGK+ SKIGRVDSLDDDG Sbjct: 646 VMNRASLERGMFRSEHIRSYKADVDNKESVG-KKPKFEDSVNFGKVQSKIGRVDSLDDDG 704 Query: 1197 FPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQVR 1376 FPFIGANLQ+GDIV+G+CAESGADHSIKLKHTERG VQKV+LSANDEG NFA VSLRQVR Sbjct: 705 FPFIGANLQNGDIVVGRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVR 764 Score = 97.4 bits (241), Expect(2) = 2e-97 Identities = 45/52 (86%), Positives = 49/52 (94%) Frame = +2 Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588 VSLRQVR+P +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIV+NPHAF Sbjct: 758 VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAF 809 Score = 294 bits (753), Expect = 4e-77 Identities = 150/236 (63%), Positives = 171/236 (72%), Gaps = 6/236 (2%) Frame = +1 Query: 1 MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 180 + DMRKTRQ V Y+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN+AITG+VSTN+ + Sbjct: 326 IADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLAITGLVSTNIEE 385 Query: 181 PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVNTLKRKRRSKEVPP 360 L LL GMEK GK K+FLDG WVGVC DS+S V L+RKRR KEVP Sbjct: 386 HFLDKLLDSGMEK-LVDDTSTLLSGKVKVFLDGNWVGVCGDSVSFVAALRRKRRRKEVPH 444 Query: 361 QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG-YNIHSLMNKXXXXXXXXX 537 QVEIKRD+Q EVR+F+D+GRILRPLLVVENL KI KGG Y+ SL++K Sbjct: 445 QVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTE 504 Query: 538 XXXDCQTAWGVKYLFSEEKV-----YTHCELDPSFLLGLSCGIIPFTNHDHARRAL 690 DC+TAWG+ YLF E + YTHCELD SFLLGLS IIPF NHDHARR L Sbjct: 505 EEEDCRTAWGINYLFMENEAKATVKYTHCELDMSFLLGLSAAIIPFANHDHARRVL 560 >ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis vinifera] Length = 1198 Score = 285 bits (730), Expect(2) = 4e-97 Identities = 144/181 (79%), Positives = 158/181 (87%), Gaps = 1/181 (0%) Frame = +3 Query: 837 LSHQLYYPQRPLFRTVISDCLGKPEYPLG-KNVHPMSEIYNGQNAIVAVNVHQGYNQEDS 1013 LSHQLYYPQRPLFRT+ISDCLGKP Y G K + P E +NGQ AIVAVNVH GYNQEDS Sbjct: 764 LSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDS 823 Query: 1014 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1193 LVMNRASLERGMFR+EHIR YK+EV+N E L+ KR KS+D + FGKM SKIGRVDSLDDD Sbjct: 824 LVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIGRVDSLDDD 882 Query: 1194 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1373 GFPFIGANLQ+GDIVIG+CAESG DHSIKLKHTERG VQKV++SAND+G NFA VSLRQV Sbjct: 883 GFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQV 942 Query: 1374 R 1376 R Sbjct: 943 R 943 Score = 97.8 bits (242), Expect(2) = 4e-97 Identities = 46/52 (88%), Positives = 49/52 (94%) Frame = +2 Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588 VSLRQVR+P +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAF Sbjct: 937 VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 988 Score = 300 bits (768), Expect = 7e-79 Identities = 149/233 (63%), Positives = 171/233 (73%), Gaps = 5/233 (2%) Frame = +1 Query: 7 DMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQPL 186 DMRKTRQ VQY+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN+AITG+VST ++ PL Sbjct: 508 DMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPL 567 Query: 187 LGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVNTLKRKRRSKEVPPQV 366 + L CGMEK GKNK+FLDG+WVGVC D +S V L+ KRR KE+P QV Sbjct: 568 VDKLFDCGMEK-LVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQV 626 Query: 367 EIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKG-GYNIHSLMNKXXXXXXXXXXX 543 EIKRD+QQ EVRIF+D+GRILRPLLVVENLKK+ KG + SL++K Sbjct: 627 EIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEE 686 Query: 544 XDCQTAWGVKYLFSEEK----VYTHCELDPSFLLGLSCGIIPFTNHDHARRAL 690 DC TAWG+KYL YTHCELD SFLLGLSCGIIP+ NHDHARR L Sbjct: 687 EDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVL 739 >gb|ACQ99756.1| RNA polymerase IV, partial [Heliosperma oliverae] Length = 363 Score = 283 bits (723), Expect(2) = 9e-97 Identities = 140/181 (77%), Positives = 159/181 (87%), Gaps = 1/181 (0%) Frame = +3 Query: 837 LSHQLYYPQRPLFRTVISDCLGKPEYPLGKNVH-PMSEIYNGQNAIVAVNVHQGYNQEDS 1013 LSHQ+YYPQRPLFR+VI+D LGKP++ LG+N P SE +NGQNAIVAVNVH GYNQEDS Sbjct: 95 LSHQMYYPQRPLFRSVIADALGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDS 154 Query: 1014 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1193 +VMNRASLERGMFRTEHIR YKAEV+NK+ LE +R K D I FGK+ SK+GRVDSLDDD Sbjct: 155 IVMNRASLERGMFRTEHIRSYKAEVDNKDSLENRR-KFDDAISFGKIQSKLGRVDSLDDD 213 Query: 1194 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1373 GFP IGANLQSGDI+IG+C+ESG DHSIKLKHTE+G VQKV+LSAND+G NFA VSLRQV Sbjct: 214 GFPHIGANLQSGDIIIGRCSESGXDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQV 273 Query: 1374 R 1376 R Sbjct: 274 R 274 Score = 99.4 bits (246), Expect(2) = 9e-97 Identities = 47/52 (90%), Positives = 49/52 (94%) Frame = +2 Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588 VSLRQVRSP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAF Sbjct: 268 VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAF 319 Score = 79.7 bits (195), Expect = 2e-12 Identities = 39/70 (55%), Positives = 45/70 (64%), Gaps = 5/70 (7%) Frame = +1 Query: 496 SLMNKXXXXXXXXXXXXDCQTAWGVKYLFSEEK-----VYTHCELDPSFLLGLSCGIIPF 660 +L++K DC TAW +KYLF +K YTHCELD SFLLG+SCGIIPF Sbjct: 1 TLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPF 60 Query: 661 TNHDHARRAL 690 NHDHARR L Sbjct: 61 ANHDHARRVL 70