BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004657
         (1588 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   292   2e-99
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...   284   8e-98
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   294   2e-97
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   300   4e-97
gb|ACQ99756.1| RNA polymerase IV, partial [Heliosperma oliverae]      283   9e-97

>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score =  292 bits (747), Expect(2) = 2e-99
 Identities = 147/181 (81%), Positives = 160/181 (88%), Gaps = 1/181 (0%)
 Frame = +3

Query: 837  LSHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIYNGQNAIVAVNVHQGYNQEDS 1013
            LSHQLYYPQRPLFRTV SDCLGKP    G N + P  E+YNGQNAIVAVNVH GYNQEDS
Sbjct: 769  LSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDS 828

Query: 1014 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1193
            LVMNRASLERGMFR+EHIR YKA+V+NKE+L+ KR K  D ++FGK+PSKIGRVDSLDDD
Sbjct: 829  LVMNRASLERGMFRSEHIRSYKADVDNKELLD-KRRKYDDNVNFGKIPSKIGRVDSLDDD 887

Query: 1194 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1373
            GFPFIGANLQSGDIVIG+CAESG DHSIKLKHTERG VQKV+LS+NDEG NFA VSLRQV
Sbjct: 888  GFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQV 947

Query: 1374 R 1376
            R
Sbjct: 948  R 948



 Score = 99.0 bits (245), Expect(2) = 2e-99
 Identities = 46/52 (88%), Positives = 49/52 (94%)
 Frame = +2

Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588
            VSLRQVRSP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPH+F
Sbjct: 942  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSF 993



 Score =  291 bits (745), Expect = 3e-76
 Identities = 145/236 (61%), Positives = 173/236 (73%), Gaps = 6/236 (2%)
 Frame = +1

Query: 1    MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 180
            M D+RKTR HVQY+GKVGDARFPHPSHWG++CFLST DGENCGLVKN+A TG+VS N+++
Sbjct: 510  MVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILE 569

Query: 181  PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVNTLKRKRRSKEVPP 360
            PL+  L+  GMEK          + K+K+FL+GEWVGVC DS   V  L+R RR K++P 
Sbjct: 570  PLIDKLIARGMEKVPEDSHSDLDE-KDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQ 628

Query: 361  QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG-YNIHSLMNKXXXXXXXXX 537
            QVEIKRD+QQ+EVRIF+D+GRILRPLLVV+NL KI   KGG     SL++K         
Sbjct: 629  QVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTE 688

Query: 538  XXXDCQTAWGVKYLFS-----EEKVYTHCELDPSFLLGLSCGIIPFTNHDHARRAL 690
               DC TAWG+K+L S     +   YTHCELD SFLLGLSCGIIPF NHDHARR L
Sbjct: 689  EEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVL 744


>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1237

 Score =  284 bits (727), Expect(2) = 8e-98
 Identities = 141/180 (78%), Positives = 157/180 (87%)
 Frame = +3

Query: 837  LSHQLYYPQRPLFRTVISDCLGKPEYPLGKNVHPMSEIYNGQNAIVAVNVHQGYNQEDSL 1016
            LSHQL+YPQRPLF+T+ SDCLGKP Y     V P SE YNGQNAIVAVNVH GYNQEDSL
Sbjct: 804  LSHQLFYPQRPLFQTMTSDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYNQEDSL 863

Query: 1017 VMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDG 1196
            VMNRASL+RGMFR+EHIR YKAE+ENKE  E KR K +D ++FGK+ SKIGRVDSLDDDG
Sbjct: 864  VMNRASLQRGMFRSEHIRSYKAEIENKESSE-KRKKPEDIVNFGKIQSKIGRVDSLDDDG 922

Query: 1197 FPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQVR 1376
            FPF+GANLQSGDI+IG+CA+SG DHSIKLKHTERG VQKV+LS+NDEG NFA VSLRQVR
Sbjct: 923  FPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVR 982



 Score =  101 bits (251), Expect(2) = 8e-98
 Identities = 47/52 (90%), Positives = 50/52 (96%)
 Frame = +2

Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588
            VSLRQVRSP++GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAF
Sbjct: 976  VSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAF 1027



 Score =  271 bits (692), Expect = 5e-70
 Identities = 136/235 (57%), Positives = 170/235 (72%), Gaps = 5/235 (2%)
 Frame = +1

Query: 1    MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 180
            M ++R+TRQ VQY+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN+A+TG+VST++ +
Sbjct: 546  MAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTDVTE 605

Query: 181  PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVNTLKRKRRSKEVPP 360
             +L  L  CGME+          K K+K+FL+G+WVGVC DS+S V  L+ +RR  E+P 
Sbjct: 606  SILPQLSDCGMEELVDDTTTVLGK-KDKVFLNGDWVGVCSDSISFVAELRTRRRRNELPH 664

Query: 361  QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGGY-NIHSLMNKXXXXXXXXX 537
            QVEIKRDQ Q+EVRI +D+GRILRPLLVV NL KI   K  + +  SL++          
Sbjct: 665  QVEIKRDQCQQEVRILSDAGRILRPLLVVSNLLKIKGSKSEHKSFQSLLDNGVIELIGPE 724

Query: 538  XXXDCQTAWGVKYLFSEE----KVYTHCELDPSFLLGLSCGIIPFTNHDHARRAL 690
               D +TAWGV+YLF +E      YTHCELD SFLLGLSC ++PF NHDHARR L
Sbjct: 725  EEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVL 779


>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score =  287 bits (734), Expect(2) = 2e-97
 Identities = 142/180 (78%), Positives = 161/180 (89%), Gaps = 1/180 (0%)
 Frame = +3

Query: 840  SHQLYYPQRPLFRTVISDCLGKPEYPLGKN-VHPMSEIYNGQNAIVAVNVHQGYNQEDSL 1016
            +HQLYYPQRPLFRT++SDCLGKP YPLG N + P +E +NGQ AIVAVNVH GYNQEDSL
Sbjct: 586  THQLYYPQRPLFRTMVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSL 645

Query: 1017 VMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDDG 1196
            VMNRASLERGMFR+EHIR YKA+V+NKE +  K+ K +D ++FGK+ SKIGRVDSLDDDG
Sbjct: 646  VMNRASLERGMFRSEHIRSYKADVDNKESVG-KKPKFEDSVNFGKVQSKIGRVDSLDDDG 704

Query: 1197 FPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQVR 1376
            FPFIGANLQ+GDIV+G+CAESGADHSIKLKHTERG VQKV+LSANDEG NFA VSLRQVR
Sbjct: 705  FPFIGANLQNGDIVVGRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVR 764



 Score = 97.4 bits (241), Expect(2) = 2e-97
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +2

Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588
            VSLRQVR+P +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIV+NPHAF
Sbjct: 758  VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVVNPHAF 809



 Score =  294 bits (753), Expect = 4e-77
 Identities = 150/236 (63%), Positives = 171/236 (72%), Gaps = 6/236 (2%)
 Frame = +1

Query: 1    MCDMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQ 180
            + DMRKTRQ V Y+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN+AITG+VSTN+ +
Sbjct: 326  IADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLAITGLVSTNIEE 385

Query: 181  PLLGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVNTLKRKRRSKEVPP 360
              L  LL  GMEK           GK K+FLDG WVGVC DS+S V  L+RKRR KEVP 
Sbjct: 386  HFLDKLLDSGMEK-LVDDTSTLLSGKVKVFLDGNWVGVCGDSVSFVAALRRKRRRKEVPH 444

Query: 361  QVEIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKGG-YNIHSLMNKXXXXXXXXX 537
            QVEIKRD+Q  EVR+F+D+GRILRPLLVVENL KI   KGG Y+  SL++K         
Sbjct: 445  QVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTE 504

Query: 538  XXXDCQTAWGVKYLFSEEKV-----YTHCELDPSFLLGLSCGIIPFTNHDHARRAL 690
               DC+TAWG+ YLF E +      YTHCELD SFLLGLS  IIPF NHDHARR L
Sbjct: 505  EEEDCRTAWGINYLFMENEAKATVKYTHCELDMSFLLGLSAAIIPFANHDHARRVL 560


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score =  285 bits (730), Expect(2) = 4e-97
 Identities = 144/181 (79%), Positives = 158/181 (87%), Gaps = 1/181 (0%)
 Frame = +3

Query: 837  LSHQLYYPQRPLFRTVISDCLGKPEYPLG-KNVHPMSEIYNGQNAIVAVNVHQGYNQEDS 1013
            LSHQLYYPQRPLFRT+ISDCLGKP Y  G K + P  E +NGQ AIVAVNVH GYNQEDS
Sbjct: 764  LSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDS 823

Query: 1014 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1193
            LVMNRASLERGMFR+EHIR YK+EV+N E L+ KR KS+D + FGKM SKIGRVDSLDDD
Sbjct: 824  LVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKR-KSEDSVHFGKMQSKIGRVDSLDDD 882

Query: 1194 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1373
            GFPFIGANLQ+GDIVIG+CAESG DHSIKLKHTERG VQKV++SAND+G NFA VSLRQV
Sbjct: 883  GFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQV 942

Query: 1374 R 1376
            R
Sbjct: 943  R 943



 Score = 97.8 bits (242), Expect(2) = 4e-97
 Identities = 46/52 (88%), Positives = 49/52 (94%)
 Frame = +2

Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588
            VSLRQVR+P +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAF
Sbjct: 937  VSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 988



 Score =  300 bits (768), Expect = 7e-79
 Identities = 149/233 (63%), Positives = 171/233 (73%), Gaps = 5/233 (2%)
 Frame = +1

Query: 7    DMRKTRQHVQYSGKVGDARFPHPSHWGKLCFLSTSDGENCGLVKNMAITGIVSTNLIQPL 186
            DMRKTRQ VQY+GKVGDAR+PHPSHWGK+CFLST DGENCGLVKN+AITG+VST ++ PL
Sbjct: 508  DMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPL 567

Query: 187  LGILLVCGMEKXXXXXXXXXXKGKNKIFLDGEWVGVCRDSLSLVNTLKRKRRSKEVPPQV 366
            +  L  CGMEK           GKNK+FLDG+WVGVC D +S V  L+ KRR KE+P QV
Sbjct: 568  VDKLFDCGMEK-LVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQV 626

Query: 367  EIKRDQQQEEVRIFTDSGRILRPLLVVENLKKINLLKG-GYNIHSLMNKXXXXXXXXXXX 543
            EIKRD+QQ EVRIF+D+GRILRPLLVVENLKK+   KG  +   SL++K           
Sbjct: 627  EIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEE 686

Query: 544  XDCQTAWGVKYLFSEEK----VYTHCELDPSFLLGLSCGIIPFTNHDHARRAL 690
             DC TAWG+KYL          YTHCELD SFLLGLSCGIIP+ NHDHARR L
Sbjct: 687  EDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVL 739


>gb|ACQ99756.1| RNA polymerase IV, partial [Heliosperma oliverae]
          Length = 363

 Score =  283 bits (723), Expect(2) = 9e-97
 Identities = 140/181 (77%), Positives = 159/181 (87%), Gaps = 1/181 (0%)
 Frame = +3

Query: 837  LSHQLYYPQRPLFRTVISDCLGKPEYPLGKNVH-PMSEIYNGQNAIVAVNVHQGYNQEDS 1013
            LSHQ+YYPQRPLFR+VI+D LGKP++ LG+N   P SE +NGQNAIVAVNVH GYNQEDS
Sbjct: 95   LSHQMYYPQRPLFRSVIADALGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDS 154

Query: 1014 LVMNRASLERGMFRTEHIRCYKAEVENKEILETKRMKSKDKIDFGKMPSKIGRVDSLDDD 1193
            +VMNRASLERGMFRTEHIR YKAEV+NK+ LE +R K  D I FGK+ SK+GRVDSLDDD
Sbjct: 155  IVMNRASLERGMFRTEHIRSYKAEVDNKDSLENRR-KFDDAISFGKIQSKLGRVDSLDDD 213

Query: 1194 GFPFIGANLQSGDIVIGKCAESGADHSIKLKHTERGKVQKVILSANDEGTNFAAVSLRQV 1373
            GFP IGANLQSGDI+IG+C+ESG DHSIKLKHTE+G VQKV+LSAND+G NFA VSLRQV
Sbjct: 214  GFPHIGANLQSGDIIIGRCSESGXDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQV 273

Query: 1374 R 1376
            R
Sbjct: 274  R 274



 Score = 99.4 bits (246), Expect(2) = 9e-97
 Identities = 47/52 (90%), Positives = 49/52 (94%)
 Frame = +2

Query: 1433 VSLRQVRSPIVGDKFSSMHGQKGVIGLLESQENFPFTHQGIVPDIVINPHAF 1588
            VSLRQVRSP +GDKFSSMHGQKGV+G LESQENFPFT QGIVPDIVINPHAF
Sbjct: 268  VSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAF 319



 Score = 79.7 bits (195), Expect = 2e-12
 Identities = 39/70 (55%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
 Frame = +1

Query: 496 SLMNKXXXXXXXXXXXXDCQTAWGVKYLFSEEK-----VYTHCELDPSFLLGLSCGIIPF 660
           +L++K            DC TAW +KYLF  +K      YTHCELD SFLLG+SCGIIPF
Sbjct: 1   TLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPF 60

Query: 661 TNHDHARRAL 690
            NHDHARR L
Sbjct: 61  ANHDHARRVL 70