BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004613
         (1253 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270881.1| PREDICTED: F-box protein SKIP31 [Vitis vinif...   422   e-115
ref|XP_003517102.1| PREDICTED: F-box protein SKIP31-like [Glycin...   417   e-114
ref|XP_003537711.1| PREDICTED: F-box protein SKIP31-like [Glycin...   410   e-112
gb|AFK43582.1| unknown [Lotus japonicus]                              410   e-112
ref|XP_004170600.1| PREDICTED: F-box protein SKIP31-like [Cucumi...   406   e-111

>ref|XP_002270881.1| PREDICTED: F-box protein SKIP31 [Vitis vinifera]
            gi|296085460|emb|CBI29192.3| unnamed protein product
            [Vitis vinifera]
          Length = 305

 Score =  422 bits (1084), Expect = e-115
 Identities = 223/327 (68%), Positives = 245/327 (74%), Gaps = 6/327 (1%)
 Frame = +3

Query: 75   TVSEEDEDETLAHFLESEILS--SDYPDDNHKEH--TKTTATDSSPPXXXXXXXXXXXXX 242
            TVSE DEDE LAHFLESE+LS  SD   D   E    K    D                 
Sbjct: 2    TVSE-DEDENLAHFLESEVLSEASDQEKDAVAEQPQAKRLRVDEE--------------- 45

Query: 243  GVGDGASSSNNIAVSESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVASDECL 422
              G   S+   I   E+G IFS IPPE+FHHILKFLSSEDL+ACSLVC+FLN  ASDE L
Sbjct: 46   --GSKRSAPKRI---ETG-IFSKIPPELFHHILKFLSSEDLVACSLVCRFLNCAASDESL 99

Query: 423  WHRLYCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQVAKRSQ 602
            W RLYCMRWGL  PTKK R+C WK+LYI+RDEEDM +FVRN P+EFKEYYIQMQVAKRSQ
Sbjct: 100  WRRLYCMRWGLLQPTKKFRQCAWKKLYIERDEEDMIEFVRNCPSEFKEYYIQMQVAKRSQ 159

Query: 603  APLPSQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVFLCEKT 782
            APL SQVNDDRIILDKTVADQVS W+ SRGLTD+V   H CSG TC+YYQIG+VF+CEKT
Sbjct: 160  APLLSQVNDDRIILDKTVADQVSSWKSSRGLTDKVDIDHNCSGVTCTYYQIGDVFVCEKT 219

Query: 783  GRVHVCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPTETEPDAE--QGGVTDETEPFMG 956
            GRVHVC DTCREV+ DT   + VCT+SGHCFD +L   E EPD E  QGGVTDE EPFMG
Sbjct: 220  GRVHVCDDTCREVVTDTANDIVVCTISGHCFDRLLVSDE-EPDIEQQQGGVTDEAEPFMG 278

Query: 957  SGRFARAYVLGYDCVDEKELEAALRFC 1037
            SGRFARAY+LGY+C DEKELEAALRFC
Sbjct: 279  SGRFARAYLLGYNCADEKELEAALRFC 305


>ref|XP_003517102.1| PREDICTED: F-box protein SKIP31-like [Glycine max]
          Length = 324

 Score =  417 bits (1072), Expect = e-114
 Identities = 212/329 (64%), Positives = 241/329 (73%), Gaps = 12/329 (3%)
 Frame = +3

Query: 87   EDEDETLAHFLESEILS--SDYPDDNHKEHTKTTATDSSPPXXXXXXXXXXXXXGVGDGA 260
            +DEDE LA FLESE+LS  SD  ++N +E     A                      D  
Sbjct: 5    DDEDENLAQFLESEVLSEVSDKEEENVEEPKAKRARLEEDEITKQKQS--------SDSL 56

Query: 261  SSSNNIAVS--------ESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVASDE 416
            S+  NI V+        E+G  FS IPPE+FHHILKFLSSEDL++CSLVC+FLN  ASDE
Sbjct: 57   SAPKNIVVNNGVVPRRIETG-YFSQIPPELFHHILKFLSSEDLVSCSLVCRFLNYAASDE 115

Query: 417  CLWHRLYCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQVAKR 596
             LW RLYCMRWG+  PT+KLREC WK LYIQRD EDM + VR+   EFKEYYIQMQ AKR
Sbjct: 116  ALWRRLYCMRWGMLPPTRKLRECPWKMLYIQRDGEDMVELVRSCQNEFKEYYIQMQAAKR 175

Query: 597  SQAPLPSQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVFLCE 776
            SQAP PSQ+ DDRIILDKT+ADQVS W+ SRGL+D VV  HACSG+TCSYY IG+VF+CE
Sbjct: 176  SQAPHPSQLKDDRIILDKTLADQVSSWKSSRGLSDTVVTDHACSGETCSYYHIGDVFICE 235

Query: 777  KTGRVHVCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPTETEPDAE--QGGVTDETEPF 950
            KTG+VHVC DTCREV+MD    L VCT+SGHCFD +LSP+E EPD E  QGGVTDE EPF
Sbjct: 236  KTGQVHVCDDTCREVVMDPTNELLVCTISGHCFDRLLSPSEMEPDTEQQQGGVTDEAEPF 295

Query: 951  MGSGRFARAYVLGYDCVDEKELEAALRFC 1037
            MGSGRFARAY LGY+C DEKELEA LRFC
Sbjct: 296  MGSGRFARAYSLGYNCADEKELEATLRFC 324


>ref|XP_003537711.1| PREDICTED: F-box protein SKIP31-like [Glycine max]
          Length = 325

 Score =  410 bits (1055), Expect = e-112
 Identities = 211/333 (63%), Positives = 244/333 (73%), Gaps = 16/333 (4%)
 Frame = +3

Query: 87   EDEDETLAHFLESEILS--SDYPDDNHKE---HTKTTATDSSPPXXXXXXXXXXXXXGVG 251
            +DEDE LA FLESE+LS  SD  ++N +E     K    D                    
Sbjct: 5    DDEDENLAQFLESEVLSEVSDKEEENVEEPKAKRKRVEEDEITKQKQS-----------S 53

Query: 252  DGASSSNNIAVS--------ESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVA 407
            D +S+  NI VS        E+G  FS IPPE+F+HILKFLSSEDL++CSLVC+FLN  A
Sbjct: 54   DSSSAPKNIVVSNGVVLRRIETG-YFSQIPPELFNHILKFLSSEDLVSCSLVCRFLNYAA 112

Query: 408  SDECLWHRLYCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQV 587
            SDE LW RLYCMRWG+  PT+KLREC WK+LYIQRD EDM + VR+   EFKEYYIQMQ 
Sbjct: 113  SDEALWRRLYCMRWGILPPTRKLRECPWKKLYIQRDGEDMVELVRSCQNEFKEYYIQMQA 172

Query: 588  AKRSQAPLPSQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVF 767
            AKRSQAP PSQ+ DDRIILDKT+ADQVS W+ SRGL+D VV  HACSG+TCSYY IG+VF
Sbjct: 173  AKRSQAPHPSQLKDDRIILDKTLADQVSSWKSSRGLSDTVVTDHACSGETCSYYHIGDVF 232

Query: 768  LCEKTGRVHVCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPT-ETEPDAE--QGGVTDE 938
            +CEKTG+VHVC DTCRE++MD   GL VCT+SGHC D +LSP+ E EPD E  QGGV DE
Sbjct: 233  ICEKTGQVHVCDDTCRELVMDPTNGLLVCTISGHCLDRLLSPSEEMEPDTEQQQGGVADE 292

Query: 939  TEPFMGSGRFARAYVLGYDCVDEKELEAALRFC 1037
             EPFMGSGRFARAY+LGY+C DEKELEA LRFC
Sbjct: 293  AEPFMGSGRFARAYLLGYNCADEKELEATLRFC 325


>gb|AFK43582.1| unknown [Lotus japonicus]
          Length = 328

 Score =  410 bits (1054), Expect = e-112
 Identities = 207/325 (63%), Positives = 237/325 (72%), Gaps = 8/325 (2%)
 Frame = +3

Query: 87   EDEDETLAHFLESEILS--SDYPDDNHKE----HTKTTATDSSPPXXXXXXXXXXXXXGV 248
            +DEDE LA FLESE+LS  SD  ++N +E      +    +S+                 
Sbjct: 5    DDEDENLAQFLESEVLSEVSDKEEENLEEPKAKRKRIEEAESTKQGQGTKQISAPLSEPE 64

Query: 249  GDGASSSNNIAVSESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVASDECLWH 428
              G ++       E+G  FS IPPE FHHILKFLSSEDLI+CS VC FLN  ASDE LW 
Sbjct: 65   NYGVNNGVVPKRIETG-FFSKIPPEFFHHILKFLSSEDLISCSAVCTFLNYAASDEALWR 123

Query: 429  RLYCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQVAKRSQAP 608
            RLYCMRWGL  PT+KLREC W+ LYIQRD +DM + VRN   EFKEYYIQMQ AKRSQAP
Sbjct: 124  RLYCMRWGLLPPTRKLRECPWENLYIQRDGDDMVELVRNCQNEFKEYYIQMQAAKRSQAP 183

Query: 609  LPSQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVFLCEKTGR 788
             PSQ+NDDRIILDKT+ADQVS W+ SRGL+D VV  HACSG+TCSYY IG+VF+CEKTG+
Sbjct: 184  NPSQLNDDRIILDKTLADQVSSWKSSRGLSDTVVTDHACSGETCSYYAIGDVFICEKTGQ 243

Query: 789  VHVCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPTETEPDAE--QGGVTDETEPFMGSG 962
            VHVC +TCREV+MD    L VCT+SGHCFD +LSP E EPDAE  QGG  DE EPFMGSG
Sbjct: 244  VHVCDETCREVVMDPTNELLVCTISGHCFDRLLSPAEMEPDAEQQQGGAADEAEPFMGSG 303

Query: 963  RFARAYVLGYDCVDEKELEAALRFC 1037
            RFARAY+LGY+C DEKELEA LRFC
Sbjct: 304  RFARAYLLGYNCADEKELEATLRFC 328


>ref|XP_004170600.1| PREDICTED: F-box protein SKIP31-like [Cucumis sativus]
          Length = 320

 Score =  406 bits (1043), Expect = e-111
 Identities = 203/321 (63%), Positives = 236/321 (73%), Gaps = 4/321 (1%)
 Frame = +3

Query: 87   EDEDETLAHFLESEILS--SDYPDDNHKEHTKTTATDSSPPXXXXXXXXXXXXXGVGDGA 260
            +++DE LA FLESE+LS  SD  + N +E  K                       V   +
Sbjct: 5    DEDDEFLAQFLESEVLSEVSDKEEGNVQEEPKPKRARIEQ----ISPNEQREVVSVTSSS 60

Query: 261  SSSNNIAVS--ESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVASDECLWHRL 434
            S S  +     ESG IFS IPPE+F HILKFLSSEDLI+CSLVC+FLN  ASDE LW RL
Sbjct: 61   SQSKGVVPGRIESG-IFSKIPPELFRHILKFLSSEDLISCSLVCRFLNSAASDESLWRRL 119

Query: 435  YCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQVAKRSQAPLP 614
            YC+RWG+   TKKLR+C WK+LYIQRDEEDM Q VR+  +EFKEYYIQMQ AKRSQAPLP
Sbjct: 120  YCLRWGMLPTTKKLRQCPWKKLYIQRDEEDMTQLVRDCSSEFKEYYIQMQAAKRSQAPLP 179

Query: 615  SQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVFLCEKTGRVH 794
            SQV DD+IILD+T+ADQVS W+ SRGLTD++V  H CSG+TC+YYQIG+ F+CEKTG VH
Sbjct: 180  SQVQDDQIILDRTMADQVSTWKSSRGLTDKIVLDHTCSGETCTYYQIGDAFVCEKTGLVH 239

Query: 795  VCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPTETEPDAEQGGVTDETEPFMGSGRFAR 974
            VC DTCREV+MD N    VCT+SGHCFDT+L P   EPD +Q G TDE EPFMGSGRFAR
Sbjct: 240  VCDDTCREVIMDPNDEQLVCTISGHCFDTLLLPDAMEPDTQQAGGTDEAEPFMGSGRFAR 299

Query: 975  AYVLGYDCVDEKELEAALRFC 1037
            AY+LGY+C DE ELEA LRFC
Sbjct: 300  AYLLGYNCADEAELEATLRFC 320