BLASTX nr result
ID: Coptis24_contig00004613
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004613 (1253 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002270881.1| PREDICTED: F-box protein SKIP31 [Vitis vinif... 422 e-115 ref|XP_003517102.1| PREDICTED: F-box protein SKIP31-like [Glycin... 417 e-114 ref|XP_003537711.1| PREDICTED: F-box protein SKIP31-like [Glycin... 410 e-112 gb|AFK43582.1| unknown [Lotus japonicus] 410 e-112 ref|XP_004170600.1| PREDICTED: F-box protein SKIP31-like [Cucumi... 406 e-111 >ref|XP_002270881.1| PREDICTED: F-box protein SKIP31 [Vitis vinifera] gi|296085460|emb|CBI29192.3| unnamed protein product [Vitis vinifera] Length = 305 Score = 422 bits (1084), Expect = e-115 Identities = 223/327 (68%), Positives = 245/327 (74%), Gaps = 6/327 (1%) Frame = +3 Query: 75 TVSEEDEDETLAHFLESEILS--SDYPDDNHKEH--TKTTATDSSPPXXXXXXXXXXXXX 242 TVSE DEDE LAHFLESE+LS SD D E K D Sbjct: 2 TVSE-DEDENLAHFLESEVLSEASDQEKDAVAEQPQAKRLRVDEE--------------- 45 Query: 243 GVGDGASSSNNIAVSESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVASDECL 422 G S+ I E+G IFS IPPE+FHHILKFLSSEDL+ACSLVC+FLN ASDE L Sbjct: 46 --GSKRSAPKRI---ETG-IFSKIPPELFHHILKFLSSEDLVACSLVCRFLNCAASDESL 99 Query: 423 WHRLYCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQVAKRSQ 602 W RLYCMRWGL PTKK R+C WK+LYI+RDEEDM +FVRN P+EFKEYYIQMQVAKRSQ Sbjct: 100 WRRLYCMRWGLLQPTKKFRQCAWKKLYIERDEEDMIEFVRNCPSEFKEYYIQMQVAKRSQ 159 Query: 603 APLPSQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVFLCEKT 782 APL SQVNDDRIILDKTVADQVS W+ SRGLTD+V H CSG TC+YYQIG+VF+CEKT Sbjct: 160 APLLSQVNDDRIILDKTVADQVSSWKSSRGLTDKVDIDHNCSGVTCTYYQIGDVFVCEKT 219 Query: 783 GRVHVCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPTETEPDAE--QGGVTDETEPFMG 956 GRVHVC DTCREV+ DT + VCT+SGHCFD +L E EPD E QGGVTDE EPFMG Sbjct: 220 GRVHVCDDTCREVVTDTANDIVVCTISGHCFDRLLVSDE-EPDIEQQQGGVTDEAEPFMG 278 Query: 957 SGRFARAYVLGYDCVDEKELEAALRFC 1037 SGRFARAY+LGY+C DEKELEAALRFC Sbjct: 279 SGRFARAYLLGYNCADEKELEAALRFC 305 >ref|XP_003517102.1| PREDICTED: F-box protein SKIP31-like [Glycine max] Length = 324 Score = 417 bits (1072), Expect = e-114 Identities = 212/329 (64%), Positives = 241/329 (73%), Gaps = 12/329 (3%) Frame = +3 Query: 87 EDEDETLAHFLESEILS--SDYPDDNHKEHTKTTATDSSPPXXXXXXXXXXXXXGVGDGA 260 +DEDE LA FLESE+LS SD ++N +E A D Sbjct: 5 DDEDENLAQFLESEVLSEVSDKEEENVEEPKAKRARLEEDEITKQKQS--------SDSL 56 Query: 261 SSSNNIAVS--------ESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVASDE 416 S+ NI V+ E+G FS IPPE+FHHILKFLSSEDL++CSLVC+FLN ASDE Sbjct: 57 SAPKNIVVNNGVVPRRIETG-YFSQIPPELFHHILKFLSSEDLVSCSLVCRFLNYAASDE 115 Query: 417 CLWHRLYCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQVAKR 596 LW RLYCMRWG+ PT+KLREC WK LYIQRD EDM + VR+ EFKEYYIQMQ AKR Sbjct: 116 ALWRRLYCMRWGMLPPTRKLRECPWKMLYIQRDGEDMVELVRSCQNEFKEYYIQMQAAKR 175 Query: 597 SQAPLPSQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVFLCE 776 SQAP PSQ+ DDRIILDKT+ADQVS W+ SRGL+D VV HACSG+TCSYY IG+VF+CE Sbjct: 176 SQAPHPSQLKDDRIILDKTLADQVSSWKSSRGLSDTVVTDHACSGETCSYYHIGDVFICE 235 Query: 777 KTGRVHVCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPTETEPDAE--QGGVTDETEPF 950 KTG+VHVC DTCREV+MD L VCT+SGHCFD +LSP+E EPD E QGGVTDE EPF Sbjct: 236 KTGQVHVCDDTCREVVMDPTNELLVCTISGHCFDRLLSPSEMEPDTEQQQGGVTDEAEPF 295 Query: 951 MGSGRFARAYVLGYDCVDEKELEAALRFC 1037 MGSGRFARAY LGY+C DEKELEA LRFC Sbjct: 296 MGSGRFARAYSLGYNCADEKELEATLRFC 324 >ref|XP_003537711.1| PREDICTED: F-box protein SKIP31-like [Glycine max] Length = 325 Score = 410 bits (1055), Expect = e-112 Identities = 211/333 (63%), Positives = 244/333 (73%), Gaps = 16/333 (4%) Frame = +3 Query: 87 EDEDETLAHFLESEILS--SDYPDDNHKE---HTKTTATDSSPPXXXXXXXXXXXXXGVG 251 +DEDE LA FLESE+LS SD ++N +E K D Sbjct: 5 DDEDENLAQFLESEVLSEVSDKEEENVEEPKAKRKRVEEDEITKQKQS-----------S 53 Query: 252 DGASSSNNIAVS--------ESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVA 407 D +S+ NI VS E+G FS IPPE+F+HILKFLSSEDL++CSLVC+FLN A Sbjct: 54 DSSSAPKNIVVSNGVVLRRIETG-YFSQIPPELFNHILKFLSSEDLVSCSLVCRFLNYAA 112 Query: 408 SDECLWHRLYCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQV 587 SDE LW RLYCMRWG+ PT+KLREC WK+LYIQRD EDM + VR+ EFKEYYIQMQ Sbjct: 113 SDEALWRRLYCMRWGILPPTRKLRECPWKKLYIQRDGEDMVELVRSCQNEFKEYYIQMQA 172 Query: 588 AKRSQAPLPSQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVF 767 AKRSQAP PSQ+ DDRIILDKT+ADQVS W+ SRGL+D VV HACSG+TCSYY IG+VF Sbjct: 173 AKRSQAPHPSQLKDDRIILDKTLADQVSSWKSSRGLSDTVVTDHACSGETCSYYHIGDVF 232 Query: 768 LCEKTGRVHVCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPT-ETEPDAE--QGGVTDE 938 +CEKTG+VHVC DTCRE++MD GL VCT+SGHC D +LSP+ E EPD E QGGV DE Sbjct: 233 ICEKTGQVHVCDDTCRELVMDPTNGLLVCTISGHCLDRLLSPSEEMEPDTEQQQGGVADE 292 Query: 939 TEPFMGSGRFARAYVLGYDCVDEKELEAALRFC 1037 EPFMGSGRFARAY+LGY+C DEKELEA LRFC Sbjct: 293 AEPFMGSGRFARAYLLGYNCADEKELEATLRFC 325 >gb|AFK43582.1| unknown [Lotus japonicus] Length = 328 Score = 410 bits (1054), Expect = e-112 Identities = 207/325 (63%), Positives = 237/325 (72%), Gaps = 8/325 (2%) Frame = +3 Query: 87 EDEDETLAHFLESEILS--SDYPDDNHKE----HTKTTATDSSPPXXXXXXXXXXXXXGV 248 +DEDE LA FLESE+LS SD ++N +E + +S+ Sbjct: 5 DDEDENLAQFLESEVLSEVSDKEEENLEEPKAKRKRIEEAESTKQGQGTKQISAPLSEPE 64 Query: 249 GDGASSSNNIAVSESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVASDECLWH 428 G ++ E+G FS IPPE FHHILKFLSSEDLI+CS VC FLN ASDE LW Sbjct: 65 NYGVNNGVVPKRIETG-FFSKIPPEFFHHILKFLSSEDLISCSAVCTFLNYAASDEALWR 123 Query: 429 RLYCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQVAKRSQAP 608 RLYCMRWGL PT+KLREC W+ LYIQRD +DM + VRN EFKEYYIQMQ AKRSQAP Sbjct: 124 RLYCMRWGLLPPTRKLRECPWENLYIQRDGDDMVELVRNCQNEFKEYYIQMQAAKRSQAP 183 Query: 609 LPSQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVFLCEKTGR 788 PSQ+NDDRIILDKT+ADQVS W+ SRGL+D VV HACSG+TCSYY IG+VF+CEKTG+ Sbjct: 184 NPSQLNDDRIILDKTLADQVSSWKSSRGLSDTVVTDHACSGETCSYYAIGDVFICEKTGQ 243 Query: 789 VHVCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPTETEPDAE--QGGVTDETEPFMGSG 962 VHVC +TCREV+MD L VCT+SGHCFD +LSP E EPDAE QGG DE EPFMGSG Sbjct: 244 VHVCDETCREVVMDPTNELLVCTISGHCFDRLLSPAEMEPDAEQQQGGAADEAEPFMGSG 303 Query: 963 RFARAYVLGYDCVDEKELEAALRFC 1037 RFARAY+LGY+C DEKELEA LRFC Sbjct: 304 RFARAYLLGYNCADEKELEATLRFC 328 >ref|XP_004170600.1| PREDICTED: F-box protein SKIP31-like [Cucumis sativus] Length = 320 Score = 406 bits (1043), Expect = e-111 Identities = 203/321 (63%), Positives = 236/321 (73%), Gaps = 4/321 (1%) Frame = +3 Query: 87 EDEDETLAHFLESEILS--SDYPDDNHKEHTKTTATDSSPPXXXXXXXXXXXXXGVGDGA 260 +++DE LA FLESE+LS SD + N +E K V + Sbjct: 5 DEDDEFLAQFLESEVLSEVSDKEEGNVQEEPKPKRARIEQ----ISPNEQREVVSVTSSS 60 Query: 261 SSSNNIAVS--ESGKIFSMIPPEVFHHILKFLSSEDLIACSLVCKFLNLVASDECLWHRL 434 S S + ESG IFS IPPE+F HILKFLSSEDLI+CSLVC+FLN ASDE LW RL Sbjct: 61 SQSKGVVPGRIESG-IFSKIPPELFRHILKFLSSEDLISCSLVCRFLNSAASDESLWRRL 119 Query: 435 YCMRWGLASPTKKLRECTWKELYIQRDEEDMFQFVRNTPTEFKEYYIQMQVAKRSQAPLP 614 YC+RWG+ TKKLR+C WK+LYIQRDEEDM Q VR+ +EFKEYYIQMQ AKRSQAPLP Sbjct: 120 YCLRWGMLPTTKKLRQCPWKKLYIQRDEEDMTQLVRDCSSEFKEYYIQMQAAKRSQAPLP 179 Query: 615 SQVNDDRIILDKTVADQVSMWRVSRGLTDEVVAGHACSGDTCSYYQIGNVFLCEKTGRVH 794 SQV DD+IILD+T+ADQVS W+ SRGLTD++V H CSG+TC+YYQIG+ F+CEKTG VH Sbjct: 180 SQVQDDQIILDRTMADQVSTWKSSRGLTDKIVLDHTCSGETCTYYQIGDAFVCEKTGLVH 239 Query: 795 VCGDTCREVLMDTNTGLWVCTVSGHCFDTVLSPTETEPDAEQGGVTDETEPFMGSGRFAR 974 VC DTCREV+MD N VCT+SGHCFDT+L P EPD +Q G TDE EPFMGSGRFAR Sbjct: 240 VCDDTCREVIMDPNDEQLVCTISGHCFDTLLLPDAMEPDTQQAGGTDEAEPFMGSGRFAR 299 Query: 975 AYVLGYDCVDEKELEAALRFC 1037 AY+LGY+C DE ELEA LRFC Sbjct: 300 AYLLGYNCADEAELEATLRFC 320