BLASTX nr result

ID: Coptis24_contig00004582 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004582
         (2429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529044.1| Heterogeneous nuclear ribonucleoprotein 27C,...   551   e-154
ref|XP_002300356.1| predicted protein [Populus trichocarpa] gi|2...   549   e-153
ref|XP_002274589.1| PREDICTED: uncharacterized protein LOC100267...   542   e-151
emb|CAN75218.1| hypothetical protein VITISV_003519 [Vitis vinifera]   542   e-151
ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C,...   536   e-149

>ref|XP_002529044.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
            communis] gi|223531524|gb|EEF33355.1| Heterogeneous
            nuclear ribonucleoprotein 27C, putative [Ricinus
            communis]
          Length = 478

 Score =  551 bits (1420), Expect = e-154
 Identities = 281/475 (59%), Positives = 320/475 (67%)
 Frame = +3

Query: 402  MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
            MESDLGKLFIGGISWDT+E+RLKEYF  YG+VVEAVIM+DRTTGRARGFGFVVFADP VA
Sbjct: 1    MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60

Query: 582  ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNSSSIHGSPGPARTKKIFVGGLASTVTES 761
            ERV+++KH IDGRTVEAKKAVPRDDQHILNRN+SSIHGSPGP RTKKIFVGGLASTVT++
Sbjct: 61   ERVIVDKHMIDGRTVEAKKAVPRDDQHILNRNTSSIHGSPGPGRTKKIFVGGLASTVTDN 120

Query: 762  DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVKR 941
            DFKKYF+QFG ITDVVVMYDHNTQRPRGFGFITYDSEDAV++VL KTFHELNGKMVEVKR
Sbjct: 121  DFKKYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNGKMVEVKR 180

Query: 942  AVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXXX 1121
            AVPKELSPGPSRSPL GYNYGLSR N+FLN Y QGYN NS+G +G+RMD           
Sbjct: 181  AVPKELSPGPSRSPLIGYNYGLSRTNNFLNAYAQGYNMNSVGGFGMRMDSRFSPLASGRS 240

Query: 1122 XXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXXX 1301
                     YGMSMN EPGL+PSYGG +NF  S  +GR L+PYYSG+ +RY         
Sbjct: 241  GFPPFGTTGYGMSMNLEPGLTPSYGGGSNFGNSPGYGRMLSPYYSGNSSRYSTPIGYGVG 300

Query: 1302 XXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXXNWGLSPSISA 1481
                          VW   GLN ++NPAS                     NWG S  +SA
Sbjct: 301  NARNDSVLSPTTRNVWGNGGLNSAANPASPGAFLGSGSGSFGVSFGNSGTNWGPS-HVSA 359

Query: 1482 XXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGELYG 1661
                           +                       P  S + SN G++G+YG+LY 
Sbjct: 360  QGGGSASAYTSGSMGYGSGDSSYGLGGGAYGRNNGSNAAPNSSFAGSNSGYEGSYGDLYR 419

Query: 1662 VGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
             GSVYGD TWRS T EL+            A+DVT+K+S GY+G Y VT+RQS+R
Sbjct: 420  SGSVYGDSTWRSGTPELEGSGSFGYGLSNIAADVTAKSSEGYIGSYGVTSRQSNR 474


>ref|XP_002300356.1| predicted protein [Populus trichocarpa] gi|222847614|gb|EEE85161.1|
            predicted protein [Populus trichocarpa]
          Length = 478

 Score =  549 bits (1414), Expect = e-153
 Identities = 282/475 (59%), Positives = 321/475 (67%)
 Frame = +3

Query: 402  MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
            MESDLGKLFIGGISWDT+E+RLKEYF  YG+VVEAVIM+DR TGRARGFGFVVFADP+VA
Sbjct: 1    MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRVTGRARGFGFVVFADPIVA 60

Query: 582  ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNSSSIHGSPGPARTKKIFVGGLASTVTES 761
            ERV+MEKH +DGRTVEAKKAVPRDDQHIL+RN+SSIHGSPGP RTKKIFVGGLASTVTE+
Sbjct: 61   ERVIMEKHVVDGRTVEAKKAVPRDDQHILSRNTSSIHGSPGPGRTKKIFVGGLASTVTEN 120

Query: 762  DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVKR 941
            DFKKYF+QFG ITDVVVMYDHNT RPRGFGFITYDSE+AV++VL KTFHELNGKMVEVKR
Sbjct: 121  DFKKYFEQFGIITDVVVMYDHNTLRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180

Query: 942  AVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXXX 1121
            AVPKELSPGPSRSPL GYNYGL+R N+FLN Y QGYN NSIG +G+RMD           
Sbjct: 181  AVPKELSPGPSRSPLMGYNYGLTRANNFLNAYAQGYNMNSIGGFGMRMDSRFNPLATGRS 240

Query: 1122 XXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXXX 1301
                     YGMSMN EP LSPSYGG +NF+ + A+GR  +PYYSG+P+RY         
Sbjct: 241  GFAPFSTAGYGMSMNLEPALSPSYGGVSNFSNTPAYGRISSPYYSGNPSRYSTPVGYGEG 300

Query: 1302 XXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXXNWGLSPSISA 1481
                          VW     N ++NPAS                     NWG SP +SA
Sbjct: 301  NARNDSLLSPTTWNVWGNGSHNTATNPASPGPLLGSRTGNFGVSFGNSGSNWGTSP-VSA 359

Query: 1482 XXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGELYG 1661
                           +                       PT S S S GG++G+YG+LY 
Sbjct: 360  QGRGSASGYTTGSMGYGSGDNNYGLSGAGYVRNSGTGAPPTSSFSGSAGGYEGSYGDLYR 419

Query: 1662 VGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
             GSVYGD TW+SAT ELD            ASDVT+K+S GY+G Y VT+RQS+R
Sbjct: 420  SGSVYGDSTWQSATPELDGCGSFGYGLGDVASDVTTKSSEGYIGSYGVTSRQSNR 474


>ref|XP_002274589.1| PREDICTED: uncharacterized protein LOC100267443 [Vitis vinifera]
          Length = 478

 Score =  542 bits (1396), Expect = e-151
 Identities = 281/475 (59%), Positives = 315/475 (66%)
 Frame = +3

Query: 402  MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
            MESDLGKLFIGGISWDT+EDRLKEYF++YG+VVEAVIM+DRTTGRARGFGFVVFADP VA
Sbjct: 1    MESDLGKLFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60

Query: 582  ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNSSSIHGSPGPARTKKIFVGGLASTVTES 761
            ERVVM+KH IDGRTVEAKKAVPRDDQH+LNRN+ SIHGSPGP RTKKIFVGGLASTVTES
Sbjct: 61   ERVVMDKHMIDGRTVEAKKAVPRDDQHLLNRNTGSIHGSPGPGRTKKIFVGGLASTVTES 120

Query: 762  DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVKR 941
            DFKKYFDQFGTI DVVVMYDHNTQRPRGFGFITYDSE+AVE+VL KTFHELNGKMVEVKR
Sbjct: 121  DFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVERVLHKTFHELNGKMVEVKR 180

Query: 942  AVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXXX 1121
            AVPKE SPGPSRSPL GYNYGL R N+FLN Y QGYN +S+G+YG+RMD           
Sbjct: 181  AVPKEHSPGPSRSPLVGYNYGLGRNNNFLNNYGQGYNMSSVGSYGIRMDGRFNPVASGRS 240

Query: 1122 XXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXXX 1301
                     YGM MN E GLSPSY GN++F+ +  +GR LNPYYSG+ NRY         
Sbjct: 241  GFPPFGAPGYGMGMNLEQGLSPSYSGNSSFSNNPGYGRILNPYYSGNSNRYSTPIGYNAG 300

Query: 1302 XXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXXNWGLSPSISA 1481
                          VW    LN ++NPAS                     NWG SP I A
Sbjct: 301  NGRSDSVLNSTPRNVWGNGSLNNATNPASPGAYLGSGGGNFGVSFGNGGANWGSSP-IPA 359

Query: 1482 XXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGELYG 1661
                          N+                          S + S GG++G+Y ELY 
Sbjct: 360  QGGGSALGFTSGSLNYGSGDSSYGLGGGGYGRNSSTGVAAASSFAPSTGGYEGSYEELYR 419

Query: 1662 VGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
             GSVY D TWR+ TSELD            ASDVT+ ++  Y+G YSV NRQS+R
Sbjct: 420  SGSVYNDSTWRTPTSELDGPGSFSYGLGNAASDVTANSAEDYIGSYSVANRQSNR 474


>emb|CAN75218.1| hypothetical protein VITISV_003519 [Vitis vinifera]
          Length = 482

 Score =  542 bits (1396), Expect = e-151
 Identities = 281/475 (59%), Positives = 315/475 (66%)
 Frame = +3

Query: 402  MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
            MESDLGKLFIGGISWDT+EDRLKEYF++YG+VVEAVIM+DRTTGRARGFGFVVFADP VA
Sbjct: 1    MESDLGKLFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60

Query: 582  ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNSSSIHGSPGPARTKKIFVGGLASTVTES 761
            ERVVM+KH IDGRTVEAKKAVPRDDQH+LNRN+ SIHGSPGP RTKKIFVGGLASTVTES
Sbjct: 61   ERVVMDKHMIDGRTVEAKKAVPRDDQHLLNRNTGSIHGSPGPGRTKKIFVGGLASTVTES 120

Query: 762  DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVKR 941
            DFKKYFDQFGTI DVVVMYDHNTQRPRGFGFITYDSE+AVE+VL KTFHELNGKMVEVKR
Sbjct: 121  DFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVERVLHKTFHELNGKMVEVKR 180

Query: 942  AVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXXX 1121
            AVPKE SPGPSRSPL GYNYGL R N+FLN Y QGYN +S+G+YG+RMD           
Sbjct: 181  AVPKEHSPGPSRSPLVGYNYGLGRNNNFLNNYGQGYNMSSVGSYGIRMDGRFNPVASGRS 240

Query: 1122 XXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXXX 1301
                     YGM MN E GLSPSY GN++F+ +  +GR LNPYYSG+ NRY         
Sbjct: 241  GFPPFGAPGYGMGMNLEQGLSPSYSGNSSFSNNPGYGRILNPYYSGNSNRYSTPIGYNAG 300

Query: 1302 XXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXXNWGLSPSISA 1481
                          VW    LN ++NPAS                     NWG SP I A
Sbjct: 301  NGRSDSVLNSTPRNVWGNGSLNNATNPASPGAYLGSGGGNFGVSFGNGGANWGSSP-IPA 359

Query: 1482 XXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGELYG 1661
                          N+                          S + S GG++G+Y ELY 
Sbjct: 360  QGGGSALGFTSGSLNYGSGDSSYGLGGGGYGRNSSTGVAAASSFAPSTGGYEGSYEELYR 419

Query: 1662 VGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
             GSVY D TWR+ TSELD            ASDVT+ ++  Y+G YSV NRQS+R
Sbjct: 420  SGSVYNDSTWRTPTSELDGPGSFSYGLGNAASDVTANSAEDYIGSYSVANRQSNR 474


>ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
            communis] gi|223528341|gb|EEF30383.1| Heterogeneous
            nuclear ribonucleoprotein 27C, putative [Ricinus
            communis]
          Length = 484

 Score =  536 bits (1381), Expect = e-149
 Identities = 281/477 (58%), Positives = 324/477 (67%), Gaps = 2/477 (0%)
 Frame = +3

Query: 402  MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
            M+SD GKLFIGGISWDTNE+RLKEYF S+G+VVEAVIMKDRTTGRARGFGFVVFAD  VA
Sbjct: 1    MQSDNGKLFIGGISWDTNEERLKEYFGSFGEVVEAVIMKDRTTGRARGFGFVVFADAAVA 60

Query: 582  ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNS-SSIHGSPGPARTKKIFVGGLASTVTE 758
            ERV+MEKH IDGR VEAKKAVPRDDQ+ILNR++ SSIHGSPGP RT+KIFVGGLASTVTE
Sbjct: 61   ERVIMEKHNIDGRMVEAKKAVPRDDQNILNRSTGSSIHGSPGPGRTRKIFVGGLASTVTE 120

Query: 759  SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVK 938
            +DF+KYF+Q+GTITDVVVMYDHNTQRPRGFGFITYDSE+AV+KVL KTFHELNGKMVEVK
Sbjct: 121  TDFRKYFEQYGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMVEVK 180

Query: 939  RAVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXX 1118
            RAVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGY P+++G YG+RMD          
Sbjct: 181  RAVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYTPSAVGGYGLRMDGRFSPVAGGR 240

Query: 1119 XXXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXX 1298
                      YGM MNFEP  SPSYGGN NF+++L++GRG++PYY G+ NR+        
Sbjct: 241  SGFPPFGS-GYGMGMNFEPAFSPSYGGNANFSSNLSYGRGMSPYYIGNTNRFANPTGYDG 299

Query: 1299 XXXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXX-NWGLSPSI 1475
                           +W   GLNY+S+ AS+                     NWG S ++
Sbjct: 300  GNGGNSSFFSSVTRNLWGNGGLNYNSSSASSNTYMGSGSGSIGGNNFGNSAVNWG-SSTL 358

Query: 1476 SAXXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGEL 1655
            +A               +                        T S +ASNG FDG +G+L
Sbjct: 359  AAHGGGSNASNNNLNFGYGGGENSFSLGTGGYGRNSVNNLATTSSYAASNGSFDGTFGDL 418

Query: 1656 YGVGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
            YG GS YGDPTWRS+ SE D             SD + KNS GYV GYSV  RQ++R
Sbjct: 419  YGGGSDYGDPTWRSSNSERDGSGSFGYGLGNATSDASVKNSPGYV-GYSVNKRQTNR 474


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