BLASTX nr result
ID: Coptis24_contig00004582
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004582
(2429 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002529044.1| Heterogeneous nuclear ribonucleoprotein 27C,... 551 e-154
ref|XP_002300356.1| predicted protein [Populus trichocarpa] gi|2... 549 e-153
ref|XP_002274589.1| PREDICTED: uncharacterized protein LOC100267... 542 e-151
emb|CAN75218.1| hypothetical protein VITISV_003519 [Vitis vinifera] 542 e-151
ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C,... 536 e-149
>ref|XP_002529044.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis] gi|223531524|gb|EEF33355.1| Heterogeneous
nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 478
Score = 551 bits (1420), Expect = e-154
Identities = 281/475 (59%), Positives = 320/475 (67%)
Frame = +3
Query: 402 MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
MESDLGKLFIGGISWDT+E+RLKEYF YG+VVEAVIM+DRTTGRARGFGFVVFADP VA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
Query: 582 ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNSSSIHGSPGPARTKKIFVGGLASTVTES 761
ERV+++KH IDGRTVEAKKAVPRDDQHILNRN+SSIHGSPGP RTKKIFVGGLASTVT++
Sbjct: 61 ERVIVDKHMIDGRTVEAKKAVPRDDQHILNRNTSSIHGSPGPGRTKKIFVGGLASTVTDN 120
Query: 762 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVKR 941
DFKKYF+QFG ITDVVVMYDHNTQRPRGFGFITYDSEDAV++VL KTFHELNGKMVEVKR
Sbjct: 121 DFKKYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLHKTFHELNGKMVEVKR 180
Query: 942 AVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXXX 1121
AVPKELSPGPSRSPL GYNYGLSR N+FLN Y QGYN NS+G +G+RMD
Sbjct: 181 AVPKELSPGPSRSPLIGYNYGLSRTNNFLNAYAQGYNMNSVGGFGMRMDSRFSPLASGRS 240
Query: 1122 XXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXXX 1301
YGMSMN EPGL+PSYGG +NF S +GR L+PYYSG+ +RY
Sbjct: 241 GFPPFGTTGYGMSMNLEPGLTPSYGGGSNFGNSPGYGRMLSPYYSGNSSRYSTPIGYGVG 300
Query: 1302 XXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXXNWGLSPSISA 1481
VW GLN ++NPAS NWG S +SA
Sbjct: 301 NARNDSVLSPTTRNVWGNGGLNSAANPASPGAFLGSGSGSFGVSFGNSGTNWGPS-HVSA 359
Query: 1482 XXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGELYG 1661
+ P S + SN G++G+YG+LY
Sbjct: 360 QGGGSASAYTSGSMGYGSGDSSYGLGGGAYGRNNGSNAAPNSSFAGSNSGYEGSYGDLYR 419
Query: 1662 VGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
GSVYGD TWRS T EL+ A+DVT+K+S GY+G Y VT+RQS+R
Sbjct: 420 SGSVYGDSTWRSGTPELEGSGSFGYGLSNIAADVTAKSSEGYIGSYGVTSRQSNR 474
>ref|XP_002300356.1| predicted protein [Populus trichocarpa] gi|222847614|gb|EEE85161.1|
predicted protein [Populus trichocarpa]
Length = 478
Score = 549 bits (1414), Expect = e-153
Identities = 282/475 (59%), Positives = 321/475 (67%)
Frame = +3
Query: 402 MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
MESDLGKLFIGGISWDT+E+RLKEYF YG+VVEAVIM+DR TGRARGFGFVVFADP+VA
Sbjct: 1 MESDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRVTGRARGFGFVVFADPIVA 60
Query: 582 ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNSSSIHGSPGPARTKKIFVGGLASTVTES 761
ERV+MEKH +DGRTVEAKKAVPRDDQHIL+RN+SSIHGSPGP RTKKIFVGGLASTVTE+
Sbjct: 61 ERVIMEKHVVDGRTVEAKKAVPRDDQHILSRNTSSIHGSPGPGRTKKIFVGGLASTVTEN 120
Query: 762 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVKR 941
DFKKYF+QFG ITDVVVMYDHNT RPRGFGFITYDSE+AV++VL KTFHELNGKMVEVKR
Sbjct: 121 DFKKYFEQFGIITDVVVMYDHNTLRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKR 180
Query: 942 AVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXXX 1121
AVPKELSPGPSRSPL GYNYGL+R N+FLN Y QGYN NSIG +G+RMD
Sbjct: 181 AVPKELSPGPSRSPLMGYNYGLTRANNFLNAYAQGYNMNSIGGFGMRMDSRFNPLATGRS 240
Query: 1122 XXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXXX 1301
YGMSMN EP LSPSYGG +NF+ + A+GR +PYYSG+P+RY
Sbjct: 241 GFAPFSTAGYGMSMNLEPALSPSYGGVSNFSNTPAYGRISSPYYSGNPSRYSTPVGYGEG 300
Query: 1302 XXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXXNWGLSPSISA 1481
VW N ++NPAS NWG SP +SA
Sbjct: 301 NARNDSLLSPTTWNVWGNGSHNTATNPASPGPLLGSRTGNFGVSFGNSGSNWGTSP-VSA 359
Query: 1482 XXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGELYG 1661
+ PT S S S GG++G+YG+LY
Sbjct: 360 QGRGSASGYTTGSMGYGSGDNNYGLSGAGYVRNSGTGAPPTSSFSGSAGGYEGSYGDLYR 419
Query: 1662 VGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
GSVYGD TW+SAT ELD ASDVT+K+S GY+G Y VT+RQS+R
Sbjct: 420 SGSVYGDSTWQSATPELDGCGSFGYGLGDVASDVTTKSSEGYIGSYGVTSRQSNR 474
>ref|XP_002274589.1| PREDICTED: uncharacterized protein LOC100267443 [Vitis vinifera]
Length = 478
Score = 542 bits (1396), Expect = e-151
Identities = 281/475 (59%), Positives = 315/475 (66%)
Frame = +3
Query: 402 MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
MESDLGKLFIGGISWDT+EDRLKEYF++YG+VVEAVIM+DRTTGRARGFGFVVFADP VA
Sbjct: 1 MESDLGKLFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
Query: 582 ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNSSSIHGSPGPARTKKIFVGGLASTVTES 761
ERVVM+KH IDGRTVEAKKAVPRDDQH+LNRN+ SIHGSPGP RTKKIFVGGLASTVTES
Sbjct: 61 ERVVMDKHMIDGRTVEAKKAVPRDDQHLLNRNTGSIHGSPGPGRTKKIFVGGLASTVTES 120
Query: 762 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVKR 941
DFKKYFDQFGTI DVVVMYDHNTQRPRGFGFITYDSE+AVE+VL KTFHELNGKMVEVKR
Sbjct: 121 DFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVERVLHKTFHELNGKMVEVKR 180
Query: 942 AVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXXX 1121
AVPKE SPGPSRSPL GYNYGL R N+FLN Y QGYN +S+G+YG+RMD
Sbjct: 181 AVPKEHSPGPSRSPLVGYNYGLGRNNNFLNNYGQGYNMSSVGSYGIRMDGRFNPVASGRS 240
Query: 1122 XXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXXX 1301
YGM MN E GLSPSY GN++F+ + +GR LNPYYSG+ NRY
Sbjct: 241 GFPPFGAPGYGMGMNLEQGLSPSYSGNSSFSNNPGYGRILNPYYSGNSNRYSTPIGYNAG 300
Query: 1302 XXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXXNWGLSPSISA 1481
VW LN ++NPAS NWG SP I A
Sbjct: 301 NGRSDSVLNSTPRNVWGNGSLNNATNPASPGAYLGSGGGNFGVSFGNGGANWGSSP-IPA 359
Query: 1482 XXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGELYG 1661
N+ S + S GG++G+Y ELY
Sbjct: 360 QGGGSALGFTSGSLNYGSGDSSYGLGGGGYGRNSSTGVAAASSFAPSTGGYEGSYEELYR 419
Query: 1662 VGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
GSVY D TWR+ TSELD ASDVT+ ++ Y+G YSV NRQS+R
Sbjct: 420 SGSVYNDSTWRTPTSELDGPGSFSYGLGNAASDVTANSAEDYIGSYSVANRQSNR 474
>emb|CAN75218.1| hypothetical protein VITISV_003519 [Vitis vinifera]
Length = 482
Score = 542 bits (1396), Expect = e-151
Identities = 281/475 (59%), Positives = 315/475 (66%)
Frame = +3
Query: 402 MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
MESDLGKLFIGGISWDT+EDRLKEYF++YG+VVEAVIM+DRTTGRARGFGFVVFADP VA
Sbjct: 1 MESDLGKLFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
Query: 582 ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNSSSIHGSPGPARTKKIFVGGLASTVTES 761
ERVVM+KH IDGRTVEAKKAVPRDDQH+LNRN+ SIHGSPGP RTKKIFVGGLASTVTES
Sbjct: 61 ERVVMDKHMIDGRTVEAKKAVPRDDQHLLNRNTGSIHGSPGPGRTKKIFVGGLASTVTES 120
Query: 762 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVKR 941
DFKKYFDQFGTI DVVVMYDHNTQRPRGFGFITYDSE+AVE+VL KTFHELNGKMVEVKR
Sbjct: 121 DFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVERVLHKTFHELNGKMVEVKR 180
Query: 942 AVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXXX 1121
AVPKE SPGPSRSPL GYNYGL R N+FLN Y QGYN +S+G+YG+RMD
Sbjct: 181 AVPKEHSPGPSRSPLVGYNYGLGRNNNFLNNYGQGYNMSSVGSYGIRMDGRFNPVASGRS 240
Query: 1122 XXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXXX 1301
YGM MN E GLSPSY GN++F+ + +GR LNPYYSG+ NRY
Sbjct: 241 GFPPFGAPGYGMGMNLEQGLSPSYSGNSSFSNNPGYGRILNPYYSGNSNRYSTPIGYNAG 300
Query: 1302 XXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXXNWGLSPSISA 1481
VW LN ++NPAS NWG SP I A
Sbjct: 301 NGRSDSVLNSTPRNVWGNGSLNNATNPASPGAYLGSGGGNFGVSFGNGGANWGSSP-IPA 359
Query: 1482 XXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGELYG 1661
N+ S + S GG++G+Y ELY
Sbjct: 360 QGGGSALGFTSGSLNYGSGDSSYGLGGGGYGRNSSTGVAAASSFAPSTGGYEGSYEELYR 419
Query: 1662 VGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
GSVY D TWR+ TSELD ASDVT+ ++ Y+G YSV NRQS+R
Sbjct: 420 SGSVYNDSTWRTPTSELDGPGSFSYGLGNAASDVTANSAEDYIGSYSVANRQSNR 474
>ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis] gi|223528341|gb|EEF30383.1| Heterogeneous
nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 484
Score = 536 bits (1381), Expect = e-149
Identities = 281/477 (58%), Positives = 324/477 (67%), Gaps = 2/477 (0%)
Frame = +3
Query: 402 MESDLGKLFIGGISWDTNEDRLKEYFQSYGDVVEAVIMKDRTTGRARGFGFVVFADPVVA 581
M+SD GKLFIGGISWDTNE+RLKEYF S+G+VVEAVIMKDRTTGRARGFGFVVFAD VA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFGSFGEVVEAVIMKDRTTGRARGFGFVVFADAAVA 60
Query: 582 ERVVMEKHQIDGRTVEAKKAVPRDDQHILNRNS-SSIHGSPGPARTKKIFVGGLASTVTE 758
ERV+MEKH IDGR VEAKKAVPRDDQ+ILNR++ SSIHGSPGP RT+KIFVGGLASTVTE
Sbjct: 61 ERVIMEKHNIDGRMVEAKKAVPRDDQNILNRSTGSSIHGSPGPGRTRKIFVGGLASTVTE 120
Query: 759 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLFKTFHELNGKMVEVK 938
+DF+KYF+Q+GTITDVVVMYDHNTQRPRGFGFITYDSE+AV+KVL KTFHELNGKMVEVK
Sbjct: 121 TDFRKYFEQYGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMVEVK 180
Query: 939 RAVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYNPNSIGNYGVRMDXXXXXXXXXX 1118
RAVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGY P+++G YG+RMD
Sbjct: 181 RAVPKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYTPSAVGGYGLRMDGRFSPVAGGR 240
Query: 1119 XXXXXXXXXAYGMSMNFEPGLSPSYGGNTNFNTSLAFGRGLNPYYSGSPNRYXXXXXXXX 1298
YGM MNFEP SPSYGGN NF+++L++GRG++PYY G+ NR+
Sbjct: 241 SGFPPFGS-GYGMGMNFEPAFSPSYGGNANFSSNLSYGRGMSPYYIGNTNRFANPTGYDG 299
Query: 1299 XXXXXXXXXXXXXXXVWSTAGLNYSSNPASTXXXXXXXXXXXXXXXXXXXX-NWGLSPSI 1475
+W GLNY+S+ AS+ NWG S ++
Sbjct: 300 GNGGNSSFFSSVTRNLWGNGGLNYNSSSASSNTYMGSGSGSIGGNNFGNSAVNWG-SSTL 358
Query: 1476 SAXXXXXXXXXXXXXXNFXXXXXXXXXXXXXXXXXXXXXXXPTPSLSASNGGFDGAYGEL 1655
+A + T S +ASNG FDG +G+L
Sbjct: 359 AAHGGGSNASNNNLNFGYGGGENSFSLGTGGYGRNSVNNLATTSSYAASNGSFDGTFGDL 418
Query: 1656 YGVGSVYGDPTWRSATSELDXXXXXXXXXXXXASDVTSKNSAGYVGGYSVTNRQSSR 1826
YG GS YGDPTWRS+ SE D SD + KNS GYV GYSV RQ++R
Sbjct: 419 YGGGSDYGDPTWRSSNSERDGSGSFGYGLGNATSDASVKNSPGYV-GYSVNKRQTNR 474