BLASTX nr result
ID: Coptis24_contig00004558
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004558 (688 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003518027.1| PREDICTED: succinate dehydrogenase [ubiquino... 259 5e-67 ref|XP_002327807.1| predicted protein [Populus trichocarpa] gi|2... 254 1e-65 ref|XP_003631879.1| PREDICTED: succinate dehydrogenase [ubiquino... 253 2e-65 ref|XP_002269407.1| PREDICTED: succinate dehydrogenase [ubiquino... 253 2e-65 ref|XP_002530482.1| succinate dehydrogenase, putative [Ricinus c... 253 2e-65 >ref|XP_003518027.1| PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [Glycine max] Length = 634 Score = 259 bits (661), Expect = 5e-67 Identities = 124/150 (82%), Positives = 131/150 (87%) Frame = -1 Query: 688 WLDKIRNSNGSLLTSKIRLDMQRVMQNNAAVFRTCETLEEGCQLIDKAWESFHDVKLKDR 509 WLDK+RNSNGSL TSKIRL+MQR+MQNNAAVFRT ETLEEGCQLIDKAWESFHDVKLKDR Sbjct: 485 WLDKLRNSNGSLPTSKIRLNMQRIMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLKDR 544 Query: 508 SLIWXXXXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWLKHTLGYWE 329 SLIW NACITMHSAEARKESRGAHAREDFTKRDDE W+KHTLGYW+ Sbjct: 545 SLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEKWMKHTLGYWD 604 Query: 328 NGKIRLDYRPVHMNTLDDEIESFPPKARVY 239 N K+RLDYRPVHMNTLDDE+ESFPPKARVY Sbjct: 605 NEKVRLDYRPVHMNTLDDEVESFPPKARVY 634 >ref|XP_002327807.1| predicted protein [Populus trichocarpa] gi|222836892|gb|EEE75285.1| predicted protein [Populus trichocarpa] Length = 638 Score = 254 bits (649), Expect = 1e-65 Identities = 122/150 (81%), Positives = 128/150 (85%) Frame = -1 Query: 688 WLDKIRNSNGSLLTSKIRLDMQRVMQNNAAVFRTCETLEEGCQLIDKAWESFHDVKLKDR 509 WLDK+RNSNGSL TS IRL+MQR MQNNAAVFRT ETLEEGC LIDKAWESFHDVK+KDR Sbjct: 489 WLDKLRNSNGSLSTSHIRLNMQRTMQNNAAVFRTQETLEEGCHLIDKAWESFHDVKVKDR 548 Query: 508 SLIWXXXXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWLKHTLGYWE 329 SLIW NAC+TMHSAEARKESRGAHAREDFTKRDDENW+KHTLGYWE Sbjct: 549 SLIWNSDLIETLELENLLINACVTMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE 608 Query: 328 NGKIRLDYRPVHMNTLDDEIESFPPKARVY 239 N K+RLDYRPVHMNTLDDEIE FPPKARVY Sbjct: 609 NEKVRLDYRPVHMNTLDDEIEPFPPKARVY 638 >ref|XP_003631879.1| PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial isoform 2 [Vitis vinifera] Length = 622 Score = 253 bits (647), Expect = 2e-65 Identities = 122/150 (81%), Positives = 130/150 (86%) Frame = -1 Query: 688 WLDKIRNSNGSLLTSKIRLDMQRVMQNNAAVFRTCETLEEGCQLIDKAWESFHDVKLKDR 509 WLDK+RNSNGS+ TSKIRL+MQRVMQNNAAVFRT ETLEEGC+LIDKAWESFHDV+LKDR Sbjct: 473 WLDKLRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDKAWESFHDVQLKDR 532 Query: 508 SLIWXXXXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWLKHTLGYWE 329 SLIW NACITMHSAEARKESRGAHAREDFTKRDDENW++HTLGYWE Sbjct: 533 SLIWNSDLSETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWIRHTLGYWE 592 Query: 328 NGKIRLDYRPVHMNTLDDEIESFPPKARVY 239 N K+RLDYRPVHMN LDDEIES PPKARVY Sbjct: 593 NEKVRLDYRPVHMNPLDDEIESIPPKARVY 622 >ref|XP_002269407.1| PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial isoform 1 [Vitis vinifera] gi|297735168|emb|CBI17530.3| unnamed protein product [Vitis vinifera] Length = 670 Score = 253 bits (647), Expect = 2e-65 Identities = 122/150 (81%), Positives = 130/150 (86%) Frame = -1 Query: 688 WLDKIRNSNGSLLTSKIRLDMQRVMQNNAAVFRTCETLEEGCQLIDKAWESFHDVKLKDR 509 WLDK+RNSNGS+ TSKIRL+MQRVMQNNAAVFRT ETLEEGC+LIDKAWESFHDV+LKDR Sbjct: 521 WLDKLRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDKAWESFHDVQLKDR 580 Query: 508 SLIWXXXXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWLKHTLGYWE 329 SLIW NACITMHSAEARKESRGAHAREDFTKRDDENW++HTLGYWE Sbjct: 581 SLIWNSDLSETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWIRHTLGYWE 640 Query: 328 NGKIRLDYRPVHMNTLDDEIESFPPKARVY 239 N K+RLDYRPVHMN LDDEIES PPKARVY Sbjct: 641 NEKVRLDYRPVHMNPLDDEIESIPPKARVY 670 >ref|XP_002530482.1| succinate dehydrogenase, putative [Ricinus communis] gi|223529979|gb|EEF31905.1| succinate dehydrogenase, putative [Ricinus communis] Length = 622 Score = 253 bits (647), Expect = 2e-65 Identities = 122/150 (81%), Positives = 130/150 (86%) Frame = -1 Query: 688 WLDKIRNSNGSLLTSKIRLDMQRVMQNNAAVFRTCETLEEGCQLIDKAWESFHDVKLKDR 509 WLDK+RNSNGSL TSKIRL+MQR MQNNAAVFRT ETLEEGCQLIDKAWESFHDVKLKDR Sbjct: 473 WLDKLRNSNGSLPTSKIRLNMQRTMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLKDR 532 Query: 508 SLIWXXXXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWLKHTLGYWE 329 SLIW NACITMHSAEARKESRGAHAREDFTKRDD++W+KHTLGYWE Sbjct: 533 SLIWNSDLIETVELENLLINACITMHSAEARKESRGAHAREDFTKRDDKDWMKHTLGYWE 592 Query: 328 NGKIRLDYRPVHMNTLDDEIESFPPKARVY 239 N K+RLDYRPVHMNTLDDE+E+ PPKARVY Sbjct: 593 NEKVRLDYRPVHMNTLDDEMETIPPKARVY 622