BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004508
         (588 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315849.1| rna-dependent RNA polymerase [Populus tricho...    91   1e-16
ref|XP_002311535.1| rna-dependent RNA polymerase [Populus tricho...    90   3e-16
gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tu...    89   7e-16
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...    87   2e-15
gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum de...    87   2e-15

>ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1102

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 46/74 (62%), Positives = 56/74 (75%)
 Frame = -2

Query: 587 VNGFTPSSFQIRYGGYKGVVAVDPTSIMKLSLRKSMSKYISGNTKLKLDVLSWSKYESFF 408
           +  FTPS+FQIRYGGYKGVVAVDPTS MKLSLR+SMSKY S NT   LD+L WSKY + F
Sbjct: 555 LRSFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRRSMSKYKSTNT--SLDILDWSKYRACF 612

Query: 407 VEKKGFW*MKSFGV 366
           + ++    + + GV
Sbjct: 613 LNREVIILLSTLGV 626


>ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1139

 Score = 89.7 bits (221), Expect = 3e-16
 Identities = 44/71 (61%), Positives = 56/71 (78%)
 Frame = -2

Query: 578 FTPSSFQIRYGGYKGVVAVDPTSIMKLSLRKSMSKYISGNTKLKLDVLSWSKYESFFVEK 399
           FTPS+FQIRYGGYKGVVAVDPTS+ KLSLR+SMSKY S NT   LD+L WSKY++ ++ +
Sbjct: 572 FTPSAFQIRYGGYKGVVAVDPTSLKKLSLRRSMSKYKSTNT--SLDILGWSKYQACYLNR 629

Query: 398 KGFW*MKSFGV 366
           +    + + GV
Sbjct: 630 EVITLLSTLGV 640


>gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
          Length = 1050

 Score = 88.6 bits (218), Expect = 7e-16
 Identities = 46/71 (64%), Positives = 54/71 (76%)
 Frame = -2

Query: 578 FTPSSFQIRYGGYKGVVAVDPTSIMKLSLRKSMSKYISGNTKLKLDVLSWSKYESFFVEK 399
           +TPS+FQIRYGGYKGVVAVDP S MKLSLRKSMSKY S N   KLDVL WSKY+  F+ +
Sbjct: 395 YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN--KLDVLGWSKYQPCFLNR 452

Query: 398 KGFW*MKSFGV 366
           +    + + GV
Sbjct: 453 QLITLLSTLGV 463


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 45/71 (63%), Positives = 54/71 (76%)
 Frame = -2

Query: 578 FTPSSFQIRYGGYKGVVAVDPTSIMKLSLRKSMSKYISGNTKLKLDVLSWSKYESFFVEK 399
           +TPS+FQIRYGGYKGVVAVDP S MKLSLRKSMSKY S N   KLDVL WSKY+  ++ +
Sbjct: 546 YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN--KLDVLGWSKYQPCYLNR 603

Query: 398 KGFW*MKSFGV 366
           +    + + GV
Sbjct: 604 QLITLLSTLGV 614


>gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
          Length = 1021

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 45/71 (63%), Positives = 54/71 (76%)
 Frame = -2

Query: 578 FTPSSFQIRYGGYKGVVAVDPTSIMKLSLRKSMSKYISGNTKLKLDVLSWSKYESFFVEK 399
           +TPS+FQIRYGGYKGVVAVDP S MKL+LRKSMSKY S N   KLDVL WSKY+  F+ +
Sbjct: 395 YTPSAFQIRYGGYKGVVAVDPYSSMKLTLRKSMSKYESDNN--KLDVLGWSKYQPCFLNR 452

Query: 398 KGFW*MKSFGV 366
           +    + + GV
Sbjct: 453 QLITLLSTLGV 463