BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004507
         (1110 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272846.1| PREDICTED: 5' exonuclease Apollo [Vitis vini...   435   e-119
ref|XP_002522720.1| DNA cross-link repair protein pso2/snm1, put...   430   e-118
ref|XP_004144572.1| PREDICTED: 5' exonuclease Apollo-like [Cucum...   427   e-117
ref|XP_002332533.1| predicted protein [Populus trichocarpa] gi|2...   374   e-101
ref|XP_002890726.1| hypothetical protein ARALYDRAFT_472944 [Arab...   363   5e-98

>ref|XP_002272846.1| PREDICTED: 5' exonuclease Apollo [Vitis vinifera]
            gi|296081253|emb|CBI17997.3| unnamed protein product
            [Vitis vinifera]
          Length = 435

 Score =  435 bits (1118), Expect = e-119
 Identities = 217/359 (60%), Positives = 268/359 (74%), Gaps = 1/359 (0%)
 Frame = -2

Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930
            LHSDHT+ LSS+W KGPLFCS +TAKLFP KFP+F  SLL ++LEIGS +S SL SPSSG
Sbjct: 23   LHSDHTQCLSSSWTKGPLFCSRLTAKLFPFKFPNFNLSLL-RILEIGSWHSVSLVSPSSG 81

Query: 929  AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWERISEKALLGKSMLLNALGSDR 750
            +E TV VMAIDA HCPGAVMYLFRG+FGC+L+TGDFRWE  +E+A +G++MLL+AL  DR
Sbjct: 82   SETTVDVMAIDAHHCPGAVMYLFRGDFGCMLFTGDFRWEATNERAKIGRTMLLHALEGDR 141

Query: 749  TDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHALK 570
             ++LYLDN YCNPS+ FP RE  AQQVV+IIASHP HDI+I I+TLGKEDLLL+IS +LK
Sbjct: 142  VNILYLDNTYCNPSFSFPSREAAAQQVVDIIASHPKHDIIIGIDTLGKEDLLLYISRSLK 201

Query: 569  IKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPSG 390
            +KIWVWPERLQTMHLLGF DIF              YSFSINTLE LN + PTIGIMPSG
Sbjct: 202  VKIWVWPERLQTMHLLGFHDIFTTKTSLTRIRAVPRYSFSINTLEGLNTVRPTIGIMPSG 261

Query: 389  LPWVVRPFEENGCSLGSSHFIFH-DRSKITNSSDIAHRSQQTEVSGSVRKFHHCIYSVPY 213
            LPWVV+P E N    G      H    +I N    A  +++ ++  SV +FH  IYSVPY
Sbjct: 262  LPWVVKPSEGNDNPAGPPSISHHCGNKRIINGGPRAEINKKGKLR-SVVRFHQYIYSVPY 320

Query: 212  SDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQTIEQSSKKFQRRK 36
            S+HSCF E+++F+ L+QP+ +KGIVSSS C  +P  + G LCG   + ++  +K +RR+
Sbjct: 321  SEHSCFPEIEDFIKLVQPINIKGIVSSSFCYIEPLYYFGGLCGVNPSSQRLPRKSERRE 379


>ref|XP_002522720.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis]
            gi|223538070|gb|EEF39682.1| DNA cross-link repair protein
            pso2/snm1, putative [Ricinus communis]
          Length = 427

 Score =  430 bits (1106), Expect = e-118
 Identities = 214/359 (59%), Positives = 261/359 (72%)
 Frame = -2

Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930
            LHSDHTKGL+S W +GPLFCS +TA LFP++FP+F  SLL  VL+IG  +S S+ SPSSG
Sbjct: 23   LHSDHTKGLTSAWARGPLFCSRLTANLFPARFPEFNLSLLC-VLDIGVWHSLSVVSPSSG 81

Query: 929  AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWERISEKALLGKSMLLNALGSDR 750
            ++  +QVM IDA HCPGAVM LFRG+FGC+LYTGDFRWE  SE+  +G +MLLNAL  D 
Sbjct: 82   SQTVLQVMPIDAHHCPGAVMLLFRGDFGCLLYTGDFRWEATSERGKIGSNMLLNALKDDS 141

Query: 749  TDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHALK 570
             D+LYLDN YCNPS+ FPPR V A+QVV+IIASHP HDI+I I++LGKEDLLLHIS  L 
Sbjct: 142  VDILYLDNTYCNPSFDFPPRHVAARQVVDIIASHPGHDIIIGIDSLGKEDLLLHISRMLN 201

Query: 569  IKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPSG 390
            IKIWVWPERLQTMHLLGF DIF              YSFSINTLEELNKMHPTIGIMPSG
Sbjct: 202  IKIWVWPERLQTMHLLGFHDIFTTKTSQTRVRAVPRYSFSINTLEELNKMHPTIGIMPSG 261

Query: 389  LPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRSQQTEVSGSVRKFHHCIYSVPYS 210
            LPWVV+P + +    GS     +   K++ +           V  SV + H  IYSVPYS
Sbjct: 262  LPWVVKPTKGDDNLFGSFLTSRYKNGKLSANGGTGTDKLNGSVQ-SVERLHQYIYSVPYS 320

Query: 209  DHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQTIEQSSKKFQRRKV 33
            DHSCF+E+QEF+ L+QP +MKGIVSSSSC  +P  + G LC    + ++   K+++++V
Sbjct: 321  DHSCFSEIQEFIELVQPTSMKGIVSSSSCYINPVYYFGRLCRENWSAQRMRDKYEKKEV 379


>ref|XP_004144572.1| PREDICTED: 5' exonuclease Apollo-like [Cucumis sativus]
            gi|449493187|ref|XP_004159216.1| PREDICTED: 5'
            exonuclease Apollo-like [Cucumis sativus]
          Length = 428

 Score =  427 bits (1099), Expect = e-117
 Identities = 214/356 (60%), Positives = 258/356 (72%)
 Frame = -2

Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930
            LHSDHTKGLSS W+KGPLFCS +TAK FP KFP F  SLL +VLEIG  +S SL SPSSG
Sbjct: 23   LHSDHTKGLSSQWSKGPLFCSRLTAKFFPLKFPSFNLSLL-RVLEIGLWHSISLVSPSSG 81

Query: 929  AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWERISEKALLGKSMLLNALGSDR 750
            +   ++V+AIDA HCPGAVM LFRG+FGC+LYTGDFRWE  SE+A  G+  LLNAL  + 
Sbjct: 82   SRKVIKVVAIDAHHCPGAVMLLFRGDFGCLLYTGDFRWEMSSERANKGRIALLNALEDNT 141

Query: 749  TDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHALK 570
             DVLYLDN YCNPSY FP RE+ A+Q+V+IIASHP HDI+I +N+LGKEDLL+HIS  L 
Sbjct: 142  VDVLYLDNTYCNPSYAFPSREIAARQIVDIIASHPQHDIIIGVNSLGKEDLLVHISRMLG 201

Query: 569  IKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPSG 390
            +K+WVWPERLQTMHLLGF + F              YSFSI+TLE LN+M PTIGIMPSG
Sbjct: 202  LKVWVWPERLQTMHLLGFNNEFTTKTNLTRVRAVPRYSFSIDTLEGLNQMRPTIGIMPSG 261

Query: 389  LPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRSQQTEVSGSVRKFHHCIYSVPYS 210
            LPWVVRP E +G   GS     + +SK+  +       Q  +V  SV K H  I+SVPYS
Sbjct: 262  LPWVVRPHEGDGIPSGSLLITRYRQSKLNENGPFLIEKQTGKVE-SVTKLHKYIFSVPYS 320

Query: 209  DHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQTIEQSSKKFQR 42
            DH+CF+E+QEF+ L+ P T+KGIVSSSSC  +P  + G LCG KQ + +   K +R
Sbjct: 321  DHACFSEIQEFIKLICPTTIKGIVSSSSCYIEPLYYFGRLCGAKQPVNKFHHKKER 376


>ref|XP_002332533.1| predicted protein [Populus trichocarpa] gi|222832669|gb|EEE71146.1|
            predicted protein [Populus trichocarpa]
          Length = 360

 Score =  374 bits (959), Expect = e-101
 Identities = 195/357 (54%), Positives = 240/357 (67%), Gaps = 3/357 (0%)
 Frame = -2

Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930
            LH+DHT+GL+S W KGPLFCS +TAKL P KFPDF  SLL         +S SL SP++G
Sbjct: 23   LHTDHTQGLTSKWGKGPLFCSKLTAKLLPFKFPDFNLSLL--------RHSFSLISPTTG 74

Query: 929  AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWERISEKALLGKSMLLNALGSDR 750
            ++IT  VMA+D  HCPG VM+LFRGEFGC++YTGDF+WE  S++A   +S LLN L ++ 
Sbjct: 75   SQITAHVMALDTHHCPGVVMFLFRGEFGCLMYTGDFQWEVDSKRAKDARSRLLNVLKNET 134

Query: 749  TDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHALK 570
             DVLYLDN YCNPSY FP REV AQQVV+IIASH +HDIVI I+TLGKE+LL+HIS  L 
Sbjct: 135  VDVLYLDNTYCNPSYDFPTREVAAQQVVDIIASHLEHDIVIGIDTLGKEELLIHISRVLN 194

Query: 569  IKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPSG 390
            IKIW+W ERLQTMHLLGF D F              YS S+ TLE LN M PTIGIMPSG
Sbjct: 195  IKIWLWLERLQTMHLLGFHDTFTTKNSLTRVRAVPCYSLSVETLEGLNTMRPTIGIMPSG 254

Query: 389  LPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRSQQTEVSGSV---RKFHHCIYSV 219
            LPWV++P + +    GS   +   R K    SD        ++ G++    ++H  ++SV
Sbjct: 255  LPWVLKPVKGDDNLFGS---LLTSRYKKRQPSD--------KLDGNLAYAERYHQYMFSV 303

Query: 218  PYSDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQTIEQSSKKF 48
            PYS H CF E+QEF+ L+QP  MKGIVSSSSC  DP  +   L G    + Q  K+F
Sbjct: 304  PYSYHLCFAEIQEFIELVQPANMKGIVSSSSCYVDPLYYFSRLYG----VNQPPKRF 356


>ref|XP_002890726.1| hypothetical protein ARALYDRAFT_472944 [Arabidopsis lyrata subsp.
            lyrata] gi|297336568|gb|EFH66985.1| hypothetical protein
            ARALYDRAFT_472944 [Arabidopsis lyrata subsp. lyrata]
          Length = 422

 Score =  363 bits (931), Expect = 5e-98
 Identities = 188/346 (54%), Positives = 239/346 (69%), Gaps = 1/346 (0%)
 Frame = -2

Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930
            + SDHT+GLS  W+KGPL+CS ITA LFPS+FP F  SLL +V+ + S  S SL SPSSG
Sbjct: 23   MQSDHTRGLSGGWSKGPLYCSRITASLFPSRFPGFDLSLL-RVVPLYSWTSLSLRSPSSG 81

Query: 929  AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWER-ISEKALLGKSMLLNALGSD 753
            + + +  MAIDA HCPG++M+LFRG+FGC LYTGDFRW+   S++A   +++L++A+   
Sbjct: 82   STVRLHFMAIDAHHCPGSMMFLFRGDFGCFLYTGDFRWDADASDEA---RTILVDAIHEF 138

Query: 752  RTDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHAL 573
              D+LYLDN YCNP Y FP R+V AQ V +IIASHP HDI+IA+++LGKE+LLLH+S  L
Sbjct: 139  PVDILYLDNTYCNPIYSFPSRQVAAQLVADIIASHPSHDIIIAVDSLGKEELLLHVSRVL 198

Query: 572  KIKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPS 393
             IKIWVWPERL+TMHLLGF D+F              YSFSI TLE LN M PTIGIMPS
Sbjct: 199  NIKIWVWPERLRTMHLLGFQDVFTTDTSLTRVRAVPRYSFSIQTLEGLNTMCPTIGIMPS 258

Query: 392  GLPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRSQQTEVSGSVRKFHHCIYSVPY 213
            GLPWV  PF+ +    GS  F+       T S      +Q+   + +V KFH  +YSV Y
Sbjct: 259  GLPWVKTPFKGDDKLSGS--FLTASMKNETIS------AQKELEAAAVHKFHDYMYSVHY 310

Query: 212  SDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQ 75
            SDHSC+ E+ EF+ L++P +MKGIV SSS   DP  + G +CG  Q
Sbjct: 311  SDHSCYEEIGEFIKLVKPKSMKGIVVSSSSYVDPLYYFGRICGANQ 356