BLASTX nr result
ID: Coptis24_contig00004507
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004507 (1110 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002272846.1| PREDICTED: 5' exonuclease Apollo [Vitis vini... 435 e-119 ref|XP_002522720.1| DNA cross-link repair protein pso2/snm1, put... 430 e-118 ref|XP_004144572.1| PREDICTED: 5' exonuclease Apollo-like [Cucum... 427 e-117 ref|XP_002332533.1| predicted protein [Populus trichocarpa] gi|2... 374 e-101 ref|XP_002890726.1| hypothetical protein ARALYDRAFT_472944 [Arab... 363 5e-98 >ref|XP_002272846.1| PREDICTED: 5' exonuclease Apollo [Vitis vinifera] gi|296081253|emb|CBI17997.3| unnamed protein product [Vitis vinifera] Length = 435 Score = 435 bits (1118), Expect = e-119 Identities = 217/359 (60%), Positives = 268/359 (74%), Gaps = 1/359 (0%) Frame = -2 Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930 LHSDHT+ LSS+W KGPLFCS +TAKLFP KFP+F SLL ++LEIGS +S SL SPSSG Sbjct: 23 LHSDHTQCLSSSWTKGPLFCSRLTAKLFPFKFPNFNLSLL-RILEIGSWHSVSLVSPSSG 81 Query: 929 AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWERISEKALLGKSMLLNALGSDR 750 +E TV VMAIDA HCPGAVMYLFRG+FGC+L+TGDFRWE +E+A +G++MLL+AL DR Sbjct: 82 SETTVDVMAIDAHHCPGAVMYLFRGDFGCMLFTGDFRWEATNERAKIGRTMLLHALEGDR 141 Query: 749 TDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHALK 570 ++LYLDN YCNPS+ FP RE AQQVV+IIASHP HDI+I I+TLGKEDLLL+IS +LK Sbjct: 142 VNILYLDNTYCNPSFSFPSREAAAQQVVDIIASHPKHDIIIGIDTLGKEDLLLYISRSLK 201 Query: 569 IKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPSG 390 +KIWVWPERLQTMHLLGF DIF YSFSINTLE LN + PTIGIMPSG Sbjct: 202 VKIWVWPERLQTMHLLGFHDIFTTKTSLTRIRAVPRYSFSINTLEGLNTVRPTIGIMPSG 261 Query: 389 LPWVVRPFEENGCSLGSSHFIFH-DRSKITNSSDIAHRSQQTEVSGSVRKFHHCIYSVPY 213 LPWVV+P E N G H +I N A +++ ++ SV +FH IYSVPY Sbjct: 262 LPWVVKPSEGNDNPAGPPSISHHCGNKRIINGGPRAEINKKGKLR-SVVRFHQYIYSVPY 320 Query: 212 SDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQTIEQSSKKFQRRK 36 S+HSCF E+++F+ L+QP+ +KGIVSSS C +P + G LCG + ++ +K +RR+ Sbjct: 321 SEHSCFPEIEDFIKLVQPINIKGIVSSSFCYIEPLYYFGGLCGVNPSSQRLPRKSERRE 379 >ref|XP_002522720.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis] gi|223538070|gb|EEF39682.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis] Length = 427 Score = 430 bits (1106), Expect = e-118 Identities = 214/359 (59%), Positives = 261/359 (72%) Frame = -2 Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930 LHSDHTKGL+S W +GPLFCS +TA LFP++FP+F SLL VL+IG +S S+ SPSSG Sbjct: 23 LHSDHTKGLTSAWARGPLFCSRLTANLFPARFPEFNLSLLC-VLDIGVWHSLSVVSPSSG 81 Query: 929 AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWERISEKALLGKSMLLNALGSDR 750 ++ +QVM IDA HCPGAVM LFRG+FGC+LYTGDFRWE SE+ +G +MLLNAL D Sbjct: 82 SQTVLQVMPIDAHHCPGAVMLLFRGDFGCLLYTGDFRWEATSERGKIGSNMLLNALKDDS 141 Query: 749 TDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHALK 570 D+LYLDN YCNPS+ FPPR V A+QVV+IIASHP HDI+I I++LGKEDLLLHIS L Sbjct: 142 VDILYLDNTYCNPSFDFPPRHVAARQVVDIIASHPGHDIIIGIDSLGKEDLLLHISRMLN 201 Query: 569 IKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPSG 390 IKIWVWPERLQTMHLLGF DIF YSFSINTLEELNKMHPTIGIMPSG Sbjct: 202 IKIWVWPERLQTMHLLGFHDIFTTKTSQTRVRAVPRYSFSINTLEELNKMHPTIGIMPSG 261 Query: 389 LPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRSQQTEVSGSVRKFHHCIYSVPYS 210 LPWVV+P + + GS + K++ + V SV + H IYSVPYS Sbjct: 262 LPWVVKPTKGDDNLFGSFLTSRYKNGKLSANGGTGTDKLNGSVQ-SVERLHQYIYSVPYS 320 Query: 209 DHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQTIEQSSKKFQRRKV 33 DHSCF+E+QEF+ L+QP +MKGIVSSSSC +P + G LC + ++ K+++++V Sbjct: 321 DHSCFSEIQEFIELVQPTSMKGIVSSSSCYINPVYYFGRLCRENWSAQRMRDKYEKKEV 379 >ref|XP_004144572.1| PREDICTED: 5' exonuclease Apollo-like [Cucumis sativus] gi|449493187|ref|XP_004159216.1| PREDICTED: 5' exonuclease Apollo-like [Cucumis sativus] Length = 428 Score = 427 bits (1099), Expect = e-117 Identities = 214/356 (60%), Positives = 258/356 (72%) Frame = -2 Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930 LHSDHTKGLSS W+KGPLFCS +TAK FP KFP F SLL +VLEIG +S SL SPSSG Sbjct: 23 LHSDHTKGLSSQWSKGPLFCSRLTAKFFPLKFPSFNLSLL-RVLEIGLWHSISLVSPSSG 81 Query: 929 AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWERISEKALLGKSMLLNALGSDR 750 + ++V+AIDA HCPGAVM LFRG+FGC+LYTGDFRWE SE+A G+ LLNAL + Sbjct: 82 SRKVIKVVAIDAHHCPGAVMLLFRGDFGCLLYTGDFRWEMSSERANKGRIALLNALEDNT 141 Query: 749 TDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHALK 570 DVLYLDN YCNPSY FP RE+ A+Q+V+IIASHP HDI+I +N+LGKEDLL+HIS L Sbjct: 142 VDVLYLDNTYCNPSYAFPSREIAARQIVDIIASHPQHDIIIGVNSLGKEDLLVHISRMLG 201 Query: 569 IKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPSG 390 +K+WVWPERLQTMHLLGF + F YSFSI+TLE LN+M PTIGIMPSG Sbjct: 202 LKVWVWPERLQTMHLLGFNNEFTTKTNLTRVRAVPRYSFSIDTLEGLNQMRPTIGIMPSG 261 Query: 389 LPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRSQQTEVSGSVRKFHHCIYSVPYS 210 LPWVVRP E +G GS + +SK+ + Q +V SV K H I+SVPYS Sbjct: 262 LPWVVRPHEGDGIPSGSLLITRYRQSKLNENGPFLIEKQTGKVE-SVTKLHKYIFSVPYS 320 Query: 209 DHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQTIEQSSKKFQR 42 DH+CF+E+QEF+ L+ P T+KGIVSSSSC +P + G LCG KQ + + K +R Sbjct: 321 DHACFSEIQEFIKLICPTTIKGIVSSSSCYIEPLYYFGRLCGAKQPVNKFHHKKER 376 >ref|XP_002332533.1| predicted protein [Populus trichocarpa] gi|222832669|gb|EEE71146.1| predicted protein [Populus trichocarpa] Length = 360 Score = 374 bits (959), Expect = e-101 Identities = 195/357 (54%), Positives = 240/357 (67%), Gaps = 3/357 (0%) Frame = -2 Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930 LH+DHT+GL+S W KGPLFCS +TAKL P KFPDF SLL +S SL SP++G Sbjct: 23 LHTDHTQGLTSKWGKGPLFCSKLTAKLLPFKFPDFNLSLL--------RHSFSLISPTTG 74 Query: 929 AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWERISEKALLGKSMLLNALGSDR 750 ++IT VMA+D HCPG VM+LFRGEFGC++YTGDF+WE S++A +S LLN L ++ Sbjct: 75 SQITAHVMALDTHHCPGVVMFLFRGEFGCLMYTGDFQWEVDSKRAKDARSRLLNVLKNET 134 Query: 749 TDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHALK 570 DVLYLDN YCNPSY FP REV AQQVV+IIASH +HDIVI I+TLGKE+LL+HIS L Sbjct: 135 VDVLYLDNTYCNPSYDFPTREVAAQQVVDIIASHLEHDIVIGIDTLGKEELLIHISRVLN 194 Query: 569 IKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPSG 390 IKIW+W ERLQTMHLLGF D F YS S+ TLE LN M PTIGIMPSG Sbjct: 195 IKIWLWLERLQTMHLLGFHDTFTTKNSLTRVRAVPCYSLSVETLEGLNTMRPTIGIMPSG 254 Query: 389 LPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRSQQTEVSGSV---RKFHHCIYSV 219 LPWV++P + + GS + R K SD ++ G++ ++H ++SV Sbjct: 255 LPWVLKPVKGDDNLFGS---LLTSRYKKRQPSD--------KLDGNLAYAERYHQYMFSV 303 Query: 218 PYSDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQTIEQSSKKF 48 PYS H CF E+QEF+ L+QP MKGIVSSSSC DP + L G + Q K+F Sbjct: 304 PYSYHLCFAEIQEFIELVQPANMKGIVSSSSCYVDPLYYFSRLYG----VNQPPKRF 356 >ref|XP_002890726.1| hypothetical protein ARALYDRAFT_472944 [Arabidopsis lyrata subsp. lyrata] gi|297336568|gb|EFH66985.1| hypothetical protein ARALYDRAFT_472944 [Arabidopsis lyrata subsp. lyrata] Length = 422 Score = 363 bits (931), Expect = 5e-98 Identities = 188/346 (54%), Positives = 239/346 (69%), Gaps = 1/346 (0%) Frame = -2 Query: 1109 LHSDHTKGLSSNWNKGPLFCSSITAKLFPSKFPDFKSSLLIKVLEIGSHYSTSLFSPSSG 930 + SDHT+GLS W+KGPL+CS ITA LFPS+FP F SLL +V+ + S S SL SPSSG Sbjct: 23 MQSDHTRGLSGGWSKGPLYCSRITASLFPSRFPGFDLSLL-RVVPLYSWTSLSLRSPSSG 81 Query: 929 AEITVQVMAIDADHCPGAVMYLFRGEFGCVLYTGDFRWER-ISEKALLGKSMLLNALGSD 753 + + + MAIDA HCPG++M+LFRG+FGC LYTGDFRW+ S++A +++L++A+ Sbjct: 82 STVRLHFMAIDAHHCPGSMMFLFRGDFGCFLYTGDFRWDADASDEA---RTILVDAIHEF 138 Query: 752 RTDVLYLDNMYCNPSYLFPPREVVAQQVVNIIASHPDHDIVIAINTLGKEDLLLHISHAL 573 D+LYLDN YCNP Y FP R+V AQ V +IIASHP HDI+IA+++LGKE+LLLH+S L Sbjct: 139 PVDILYLDNTYCNPIYSFPSRQVAAQLVADIIASHPSHDIIIAVDSLGKEELLLHVSRVL 198 Query: 572 KIKIWVWPERLQTMHLLGF*DIFXXXXXXXXXXXXHFYSFSINTLEELNKMHPTIGIMPS 393 IKIWVWPERL+TMHLLGF D+F YSFSI TLE LN M PTIGIMPS Sbjct: 199 NIKIWVWPERLRTMHLLGFQDVFTTDTSLTRVRAVPRYSFSIQTLEGLNTMCPTIGIMPS 258 Query: 392 GLPWVVRPFEENGCSLGSSHFIFHDRSKITNSSDIAHRSQQTEVSGSVRKFHHCIYSVPY 213 GLPWV PF+ + GS F+ T S +Q+ + +V KFH +YSV Y Sbjct: 259 GLPWVKTPFKGDDKLSGS--FLTASMKNETIS------AQKELEAAAVHKFHDYMYSVHY 310 Query: 212 SDHSCFNELQEFVNLLQPLTMKGIVSSSSCDTDPHNFLGNLCGPKQ 75 SDHSC+ E+ EF+ L++P +MKGIV SSS DP + G +CG Q Sbjct: 311 SDHSCYEEIGEFIKLVKPKSMKGIVVSSSSYVDPLYYFGRICGANQ 356