BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004490
         (750 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    88   2e-15
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...    88   2e-15
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    87   3e-15
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    87   3e-15
emb|CAB75484.1| putative protein [Arabidopsis thaliana]                86   6e-15

>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 38/76 (50%), Positives = 50/76 (65%)
 Frame = +2

Query: 8    KSPGPDGFPAIFYHSSWDIVGPDIVNMVNKFFTDAHSLDNIGHTNIVLIPKCIYPTSCSD 187
            K+PGPDG  A FY S W+IVGPD++  V  FF  ++   +I HTNI +IPK   P + SD
Sbjct: 826  KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 885

Query: 188  YRPFSLCNISYNTTTK 235
            YRP +LCN+ Y   +K
Sbjct: 886  YRPIALCNVLYKIISK 901


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 38/76 (50%), Positives = 50/76 (65%)
 Frame = +2

Query: 8    KSPGPDGFPAIFYHSSWDIVGPDIVNMVNKFFTDAHSLDNIGHTNIVLIPKCIYPTSCSD 187
            K+PGPDG  A FY S W+IVGPD++  V  FF  ++   +I HTNI +IPK   P + SD
Sbjct: 806  KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 865

Query: 188  YRPFSLCNISYNTTTK 235
            YRP +LCN+ Y   +K
Sbjct: 866  YRPIALCNVLYKIISK 881


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 87.4 bits (215), Expect = 3e-15
 Identities = 39/76 (51%), Positives = 50/76 (65%)
 Frame = +2

Query: 8   KSPGPDGFPAIFYHSSWDIVGPDIVNMVNKFFTDAHSLDNIGHTNIVLIPKCIYPTSCSD 187
           K+PGPDG  A FY + WDIVG D++  V KFF  +    +I HTNI +IPK   PT+ SD
Sbjct: 600 KAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSD 659

Query: 188 YRPFSLCNISYNTTTK 235
           YRP +LCN+ Y   +K
Sbjct: 660 YRPIALCNVLYKVISK 675


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 87.4 bits (215), Expect = 3e-15
 Identities = 39/76 (51%), Positives = 50/76 (65%)
 Frame = +2

Query: 8    KSPGPDGFPAIFYHSSWDIVGPDIVNMVNKFFTDAHSLDNIGHTNIVLIPKCIYPTSCSD 187
            K+PGPDG  A FY + WDIVG D++  V KFF  +    +I HTNI +IPK   PT+ SD
Sbjct: 826  KAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSD 885

Query: 188  YRPFSLCNISYNTTTK 235
            YRP +LCN+ Y   +K
Sbjct: 886  YRPIALCNVLYKVISK 901


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 86.3 bits (212), Expect = 6e-15
 Identities = 37/76 (48%), Positives = 48/76 (63%)
 Frame = +2

Query: 8   KSPGPDGFPAIFYHSSWDIVGPDIVNMVNKFFTDAHSLDNIGHTNIVLIPKCIYPTSCSD 187
           K+PGPDG  A FY   WDIVG D++  V  FF  +H   ++ HTNI +IPK   P + SD
Sbjct: 65  KAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPKIQNPQTLSD 124

Query: 188 YRPFSLCNISYNTTTK 235
           YRP +LCN+ Y   +K
Sbjct: 125 YRPIALCNVLYKVISK 140