BLASTX nr result
ID: Coptis24_contig00004464
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004464
(1630 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002511905.1| conserved hypothetical protein [Ricinus comm... 370 e-100
ref|XP_003633960.1| PREDICTED: protein BPS1, chloroplastic-like ... 368 3e-99
gb|ABK94247.1| unknown [Populus trichocarpa] 359 1e-96
ref|XP_002302600.1| predicted protein [Populus trichocarpa] gi|2... 359 1e-96
gb|ABX26123.1| bypass2 [Nicotiana benthamiana] 357 4e-96
>ref|XP_002511905.1| conserved hypothetical protein [Ricinus communis]
gi|223549085|gb|EEF50574.1| conserved hypothetical
protein [Ricinus communis]
Length = 381
Score = 370 bits (949), Expect = e-100
Identities = 197/355 (55%), Positives = 255/355 (71%), Gaps = 2/355 (0%)
Frame = -1
Query: 1342 MSRAHDGQRAFFPFGNPFRMIFPKESYLSPSLLALLNSFEETLADKLISLRPKDKNDVLS 1163
MS + R FF FGNPFRM+ PK S L+P LL+LLN+FEETL ++L L PKDK+DVLS
Sbjct: 1 MSTPQEPHRPFFSFGNPFRMMSPKGSQLTPRLLSLLNAFEETLVERLKKLIPKDKDDVLS 60
Query: 1162 LSWMTSAMKSLCEIHTEIKVLITELQFPVSEWDQKWMDVYLDNSVRLLDICIAFNSEMSR 983
L+WM SAM+SLCE HT+IK LIT+L+ PV+ WD+KW+DVYLD SV+LLDICIAF+SE+SR
Sbjct: 61 LTWMKSAMESLCETHTDIKTLITDLELPVANWDEKWIDVYLDISVKLLDICIAFSSELSR 120
Query: 982 LSQGQLLLKCVQHXXXXXXXXXXXXXXXXSKTSLHEWVQQNSSRNTTLDSVSSVLHALAT 803
L+QG LLL+CV H + SL W Q SS+N +++ S+L L
Sbjct: 121 LNQGHLLLQCVLH----NLESNTSKQFVRASASLDSWRQHISSKNQRVENCRSILENLRG 176
Query: 802 SLYYPKIKDSAKGRVLMRAMYGVKVVTIFVCSVFSAAFSGSSRTLMSLEVSEKLLWAKAF 623
SL PK+K+SAKG+VLMRAMYGVKV T+F+CSVF+AAFS SS+ L+ L+VS+ + WA+AF
Sbjct: 177 SLNLPKVKNSAKGKVLMRAMYGVKVQTVFLCSVFAAAFSNSSKNLLVLDVSDTIKWAQAF 236
Query: 622 NDMQFNVNGEIRSLFADGNTTVLKEVEAVGSSVKKLQSLTKVG-NAAEAETLKFSVLDLG 446
+D+Q N+N EIR F G TVLKE++AV S VKKL + + G E E + SV DL
Sbjct: 237 SDLQTNLNVEIREKFCHGKFTVLKELDAVDSIVKKLYPMIQDGVGPVEVEAFENSVSDLR 296
Query: 445 QKMERLSQGLDLLSNEVEGFFQNVLTGRDALLCNLRD-GSIPDPRQGNNGKEQFV 284
+ E+LSQGLDLL+ +V+GFF+ VL+GRDALLC LR+ G++ D G N EQ +
Sbjct: 297 KGSEKLSQGLDLLAKQVDGFFKIVLSGRDALLCKLRESGAVNDTTLGTNVGEQLM 351
>ref|XP_003633960.1| PREDICTED: protein BPS1, chloroplastic-like [Vitis vinifera]
Length = 350
Score = 368 bits (944), Expect = 3e-99
Identities = 191/336 (56%), Positives = 245/336 (72%), Gaps = 1/336 (0%)
Frame = -1
Query: 1342 MSRAHDGQRAFFPFGNPFRMIFPKESYLSPSLLALLNSFEETLADKLISLRPKDKNDVLS 1163
MSR + R FPFGNPFRMI PK SYLSP LL+LLN FE TLA++L L+PK DVLS
Sbjct: 1 MSRPQEPHRPSFPFGNPFRMILPKGSYLSPRLLSLLNDFENTLAERLRKLKPKGTEDVLS 60
Query: 1162 LSWMTSAMKSLCEIHTEIKVLITELQFPVSEWDQKWMDVYLDNSVRLLDICIAFNSEMSR 983
SWM AM+ LCEIH +IK+LIT+L+ PV +WD KW+DVYLDNSV+LLDICIA +SE+SR
Sbjct: 61 CSWMKLAMELLCEIHKDIKILITDLELPVCDWDDKWIDVYLDNSVKLLDICIALSSELSR 120
Query: 982 LSQGQLLLKCVQHXXXXXXXXXXXXXXXXSKTSLHEWVQQNSSRNTTLDSVSSVLHALAT 803
L+QG LLL+CV +++SL W Q S+N L + ++L +LA
Sbjct: 121 LNQGHLLLQCV----LRNLDTASPKQLVRARSSLDSWRQHIGSKNPKLQNCLTILDSLAE 176
Query: 802 SLYYPKIKDSAKGRVLMRAMYGVKVVTIFVCSVFSAAFSGSSRTLMSLEVSEKLLWAKAF 623
S+ PKIK+SAKG+VLMRAMYGV+V T+FVCSVF+AAF+GS+ L+ L V++ LW++AF
Sbjct: 177 SINLPKIKNSAKGKVLMRAMYGVRVGTVFVCSVFAAAFTGSANKLIDLHVADTFLWSEAF 236
Query: 622 NDMQFNVNGEIRSLFADGNTTVLKEVEAVGSSVKKLQSLTKVG-NAAEAETLKFSVLDLG 446
D+Q VN EIR+ F+ G TVLKE+EAV +S+ KL + + G AE T + SV DLG
Sbjct: 237 TDLQSYVNVEIRNTFSSGRVTVLKELEAVDTSINKLYPMVQDGVGPAEDGTFQNSVSDLG 296
Query: 445 QKMERLSQGLDLLSNEVEGFFQNVLTGRDALLCNLR 338
+ +E+LS+GLDLL+ +V+GFFQ VLTGRDALLCNLR
Sbjct: 297 KSVEKLSEGLDLLTKDVDGFFQMVLTGRDALLCNLR 332
>gb|ABK94247.1| unknown [Populus trichocarpa]
Length = 354
Score = 359 bits (922), Expect = 1e-96
Identities = 190/351 (54%), Positives = 244/351 (69%), Gaps = 2/351 (0%)
Frame = -1
Query: 1342 MSRAHDGQRAFFPFGNPFRMIFPKESYLSPSLLALLNSFEETLADKLISLRPKDKNDVLS 1163
MS+ R FFPFGNPFRM+ PK S LSP LL+LLN+FEE LA +L L PKDK DVLS
Sbjct: 1 MSQPQQPHRPFFPFGNPFRMLSPKGSQLSPRLLSLLNTFEEALAARLRKLNPKDKGDVLS 60
Query: 1162 LSWMTSAMKSLCEIHTEIKVLITELQFPVSEWDQKWMDVYLDNSVRLLDICIAFNSEMSR 983
+WM AM+SLCE HT IK LITEL+ PV+EWD+KW+DVYLD +V+LLDICIAF+SE+S
Sbjct: 61 FTWMKLAMESLCETHTVIKTLITELELPVTEWDEKWIDVYLDITVKLLDICIAFSSELSW 120
Query: 982 LSQGQLLLKCVQHXXXXXXXXXXXXXXXXSKTSLHEWVQQNSSRNTTLDSVSSVLHALAT 803
L+QGQL L+C H +SL W Q S+N L++ S+L L
Sbjct: 121 LNQGQLFLQCALHKLESNNSEKLMQAC----SSLDSWRQHIGSKNPRLENCKSILENLVD 176
Query: 802 SLYYPKIKDSAKGRVLMRAMYGVKVVTIFVCSVFSAAFSGSSRTLMSLEVSEKLLWAKAF 623
SL PK+K+SAKG+VLMRAMYGVKV T+FVCSVF+AAFS +S+ L+ L+V +LWA+A+
Sbjct: 177 SLTLPKVKNSAKGKVLMRAMYGVKVQTVFVCSVFAAAFSVNSKNLIDLDVPNTILWAQAY 236
Query: 622 NDMQFNVNGEIRSLFADGNTTVLKEVEAVGSSVKKLQSLTKVG-NAAEAETLKFSVLDLG 446
+D+Q VNGEIR +F+ G T LKE++ V + V L + + G E E S DLG
Sbjct: 237 SDLQTTVNGEIREVFSRGKFTFLKELDEVETVVNNLYPMIQDGMGPTEVEAFSSSFSDLG 296
Query: 445 QKMERLSQGLDLLSNEVEGFFQNVLTGRDALLCNLR-DGSIPDPRQGNNGK 296
++ ERLSQ LD L+ EV+GFF+ VL+GRDALLCNLR ++ DP +G+N +
Sbjct: 297 RRAERLSQVLDFLAKEVDGFFKIVLSGRDALLCNLRVSDTVADPFRGSNSE 347
>ref|XP_002302600.1| predicted protein [Populus trichocarpa] gi|222844326|gb|EEE81873.1|
predicted protein [Populus trichocarpa]
Length = 351
Score = 359 bits (921), Expect = 1e-96
Identities = 187/356 (52%), Positives = 248/356 (69%), Gaps = 2/356 (0%)
Frame = -1
Query: 1342 MSRAHDGQRAFFPFGNPFRMIFPKESYLSPSLLALLNSFEETLADKLISLRPKDKNDVLS 1163
MSR + R FFPFGNPFRM+ K S LSP LL+LLN+FE+ LA +L L PKDK DVLS
Sbjct: 1 MSRPQEPHRPFFPFGNPFRMLSSKGSQLSPRLLSLLNAFEDALAARLRKLNPKDKYDVLS 60
Query: 1162 LSWMTSAMKSLCEIHTEIKVLITELQFPVSEWDQKWMDVYLDNSVRLLDICIAFNSEMSR 983
L+WM AM+SLCE HT+IK L TEL PV++WD+KW+DVYLD SV+LLDIC+AF+SE+ R
Sbjct: 61 LAWMKLAMESLCETHTDIKTLTTELDLPVTDWDEKWIDVYLDISVKLLDICVAFSSELLR 120
Query: 982 LSQGQLLLKCVQHXXXXXXXXXXXXXXXXSKTSLHEWVQQNSSRNTTLDSVSSVLHALAT 803
L+QG L+L C H +++S+ W Q S+N L++ S+L L
Sbjct: 121 LNQGHLMLHCALH----NLESNTSEKLVRARSSIDSWRQHIGSKNPRLENCKSILDGLVD 176
Query: 802 SLYYPKIKDSAKGRVLMRAMYGVKVVTIFVCSVFSAAFSGSSRTLMSLEVSEKLLWAKAF 623
SL PK+K+SAKG+VLM+AMYGVK+ T+FVCSV + FSG+S+ L+ L+V+ +W +AF
Sbjct: 177 SLSLPKVKNSAKGKVLMQAMYGVKIHTVFVCSVLATVFSGNSKNLLDLDVANTTMWVQAF 236
Query: 622 NDMQFNVNGEIRSLFADGNTTVLKEVEAVGSSVKKLQSLTKVG-NAAEAETLKFSVLDLG 446
+D+Q NVNG IR +F+ T LKE++ V ++VK L + + G EAE S DLG
Sbjct: 237 SDLQTNVNGGIRDIFSQRKFTALKELDEVDTAVKNLYPMIQDGTRPIEAEAFSNSFSDLG 296
Query: 445 QKMERLSQGLDLLSNEVEGFFQNVLTGRDALLCNLR-DGSIPDPRQGNNGKEQFVR 281
++ E+LSQGLD L+ V+GFF+ VL+GRDALLCNLR ++ DP G+NG EQFVR
Sbjct: 297 RRAEKLSQGLDFLTKVVDGFFKIVLSGRDALLCNLRVSDTVADPFPGSNG-EQFVR 351
>gb|ABX26123.1| bypass2 [Nicotiana benthamiana]
Length = 352
Score = 357 bits (917), Expect = 4e-96
Identities = 188/353 (53%), Positives = 251/353 (71%), Gaps = 2/353 (0%)
Frame = -1
Query: 1342 MSRAHDGQRAFFPFGNPFRMIFPKESYLSPSLLALLNSFEETLADKLISLRPKDKNDVLS 1163
MSR + R F PFGNPF+ I PK SYLSP LLALLN+FEE+LA+++ SL+P DK D+L+
Sbjct: 1 MSRPQEPHRPFLPFGNPFKFILPKGSYLSPKLLALLNAFEESLAERVKSLKPADKEDILT 60
Query: 1162 LSWMTSAMKSLCEIHTEIKVLITELQFPVSEWDQKWMDVYLDNSVRLLDICIAFNSEMSR 983
LSWMT A+ LC IHT++K LITEL+FPV +WD+KW+D+YLDNSV+LLD CIAF+S++SR
Sbjct: 61 LSWMTQAISVLCAIHTDVKTLITELEFPVCDWDEKWIDLYLDNSVKLLDTCIAFSSDISR 120
Query: 982 LSQGQLLLKCVQHXXXXXXXXXXXXXXXXSKTSLHEWVQQNSSRNTTLDSVSSVLHALAT 803
L QG L L+C H +++SL W S+N L+ ++L +LA
Sbjct: 121 LVQGCLYLQCGLH-----NLDGTSKQFMKARSSLDGWKHHIQSKNPRLEKCFAILDSLAE 175
Query: 802 SLYYPKIKDSAKGRVLMRAMYGVKVVTIFVCSVFSAAFSGSSRTLMSLEVSEKLLWAKAF 623
SL PKIK+SAKG+VLMRAMYGV+VVT+F+ S+F+ FSGS++ L L V E LW +AF
Sbjct: 176 SLNLPKIKNSAKGKVLMRAMYGVRVVTVFIFSMFAVTFSGSTKKLKDLVVHETCLWTEAF 235
Query: 622 NDMQFNVNGEIRSLFADGNTTVLKEVEAVGSSVKKLQSLTKVG-NAAEAETLKFSVLDLG 446
D++ ++GEIRS++ G T LKE+EAV +SVKKL + + G +A EAE L+ L L
Sbjct: 236 VDLRDFISGEIRSIYLKGRLTALKELEAVDTSVKKLYPIIEDGVDANEAEQLQLLTLGLT 295
Query: 445 QKMERLSQGLDLLSNEVEGFFQNVLTGRDALLCNLRDGS-IPDPRQGNNGKEQ 290
+K E+LS+GLDLL+ E + FFQ +LTGRD+LLCNLR GS + + Q NN E+
Sbjct: 296 EKAEKLSEGLDLLAKEADRFFQILLTGRDSLLCNLRVGSTVSNLAQANNYLER 348