BLASTX nr result

ID: Coptis24_contig00004456 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004456
         (1835 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268833.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   753   0.0  
ref|XP_002285072.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   751   0.0  
dbj|BAJ53224.1| JHL06P13.3 [Jatropha curcas]                          748   0.0  
ref|XP_002309623.1| predicted protein [Populus trichocarpa] gi|2...   748   0.0  
ref|XP_004171175.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   746   0.0  

>ref|XP_002268833.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56 [Vitis vinifera]
            gi|297743441|emb|CBI36308.3| unnamed protein product
            [Vitis vinifera]
          Length = 428

 Score =  753 bits (1945), Expect = 0.0
 Identities = 376/428 (87%), Positives = 395/428 (92%)
 Frame = +1

Query: 40   MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
            MGE +DN+                KAPDS+ +K   ESAKKGYVGIHSSGFRDFLLKPEL
Sbjct: 1    MGEARDND--AYEEELLDYEEEDEKAPDSVASKAAGESAKKGYVGIHSSGFRDFLLKPEL 58

Query: 220  LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
            LR+IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA
Sbjct: 59   LRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 118

Query: 400  LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
            LVLCHTRELAYQICHEFERFS YLPDIKV+VFYGGVSIKTH+DLLKNECPHIVVGTPGR+
Sbjct: 119  LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECPHIVVGTPGRI 178

Query: 580  LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
            L LARDKDL LK+VRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 179  LALARDKDLGLKHVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 238

Query: 760  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
            PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 239  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS 298

Query: 940  VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
            VSRAAELNKLL ECNFPS CIHSGM QEERLTRYK FKEGHKR+LVATDLVGRGIDIERV
Sbjct: 299  VSRAAELNKLLMECNFPSICIHSGMPQEERLTRYKNFKEGHKRILVATDLVGRGIDIERV 358

Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
            NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS SDS+VLNQVQERFEVDIKELPE
Sbjct: 359  NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPE 418

Query: 1300 DVDSSLYM 1323
             +D+S YM
Sbjct: 419  QIDTSTYM 426


>ref|XP_002285072.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Vitis
            vinifera]
          Length = 428

 Score =  751 bits (1939), Expect = 0.0
 Identities = 375/428 (87%), Positives = 394/428 (92%)
 Frame = +1

Query: 40   MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
            MGE +DN+                KAPDS+  K   E+AKKGYVGIHSSGFRDFLLKPEL
Sbjct: 1    MGETRDND--AYEEELLDYEEEEDKAPDSVTGKVNGEAAKKGYVGIHSSGFRDFLLKPEL 58

Query: 220  LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
            LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPV GQVAA
Sbjct: 59   LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAA 118

Query: 400  LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
            LVLCHTRELAYQICHEFERFS YLPDIKV+VFYGGV+IK H+DLLKNECPHIVVGTPGR+
Sbjct: 119  LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRI 178

Query: 580  LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
            L LARDKDL+LKNVRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 179  LALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 238

Query: 760  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
            PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 239  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS 298

Query: 940  VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
            VSRAAELNKLL ECNFPS CIHSGM QEERLTRYKGFKEGHKR+LVATDLVGRGIDIERV
Sbjct: 299  VSRAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV 358

Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
            NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS SDS+VLNQVQERFEVDIKELPE
Sbjct: 359  NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPE 418

Query: 1300 DVDSSLYM 1323
             +D+S YM
Sbjct: 419  QIDTSTYM 426


>dbj|BAJ53224.1| JHL06P13.3 [Jatropha curcas]
          Length = 455

 Score =  748 bits (1932), Expect = 0.0
 Identities = 373/427 (87%), Positives = 393/427 (92%)
 Frame = +1

Query: 40   MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
            MGE KDN+                KAPDS+  K   ESAKKGYVGIHSSGFRDFLLKPEL
Sbjct: 1    MGEVKDND--AYEEELLDYEEEDEKAPDSVSAKAGAESAKKGYVGIHSSGFRDFLLKPEL 58

Query: 220  LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
            LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA
Sbjct: 59   LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 118

Query: 400  LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
            LVLCHTRELAYQICHEFERFS YLPDIKV+VFYGGV+IK H+D+LKNECPHIVVGTPGR+
Sbjct: 119  LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDILKNECPHIVVGTPGRI 178

Query: 580  LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
            L LARDKDL LKNVRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 179  LALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 238

Query: 760  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
            PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL+E EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 239  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKS 298

Query: 940  VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
            V+RAAELNKLL ECNFPS CIHSGM+QEERLTRYKGFKEGHKR+LVATDLVGRGIDIERV
Sbjct: 299  VNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV 358

Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
            NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS SDS+VLNQVQ RFEVDIKELPE
Sbjct: 359  NIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPE 418

Query: 1300 DVDSSLY 1320
             +D+S Y
Sbjct: 419  QIDTSTY 425


>ref|XP_002309623.1| predicted protein [Populus trichocarpa] gi|222855599|gb|EEE93146.1|
            predicted protein [Populus trichocarpa]
          Length = 428

 Score =  748 bits (1932), Expect = 0.0
 Identities = 371/428 (86%), Positives = 393/428 (91%)
 Frame = +1

Query: 40   MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
            MGE +DN+                KAPDS+G K   E+ KKGYVGIHSSGFRDFLLKPEL
Sbjct: 1    MGETRDNDTYEEELLDYEEEDE--KAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPEL 58

Query: 220  LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
            LR+IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP +GQV A
Sbjct: 59   LRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIA 118

Query: 400  LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
            LVLCHTRELAYQICHEFERFS YLPD KV+VFYGGV+IKTH+DLLKNECPHIVVGTPGR+
Sbjct: 119  LVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRI 178

Query: 580  LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
            L LARDKDLSLKNVRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 179  LALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 238

Query: 760  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
            PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL+E EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 239  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKS 298

Query: 940  VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
            VSRAAELNKLL ECNFPS CIHSGM+QEERL RYKGFKEGHKR+LVATDLVGRGIDIERV
Sbjct: 299  VSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERV 358

Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
            NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS SDS+VLNQVQERFEVDIKELPE
Sbjct: 359  NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPE 418

Query: 1300 DVDSSLYM 1323
             +D+S YM
Sbjct: 419  QIDTSTYM 426


>ref|XP_004171175.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Cucumis
            sativus]
          Length = 427

 Score =  746 bits (1927), Expect = 0.0
 Identities = 369/428 (86%), Positives = 394/428 (92%)
 Frame = +1

Query: 40   MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
            MGE +DN                 KAPDS+G K   E+ KKGYVGIHSSGFRDFLLKPEL
Sbjct: 1    MGETRDNE---YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPEL 57

Query: 220  LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
            LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI+PVAGQV+A
Sbjct: 58   LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSA 117

Query: 400  LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
            LVLCHTRELAYQICHEFERFS YLPD+KV+VFYGGV+IK H+DLLKNECPHIVVGTPGR+
Sbjct: 118  LVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRI 177

Query: 580  LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
            L L+RDKDLSLKNVRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 178  LALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 237

Query: 760  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
            PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 238  PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKS 297

Query: 940  VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
            V+RAAEL+KLL ECNFPS CIHSGM+QEERLTRYKGFKEGHKR+LVATDLVGRGIDIERV
Sbjct: 298  VNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV 357

Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
            NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS +DS+VLN VQERFEVDIKELPE
Sbjct: 358  NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPE 417

Query: 1300 DVDSSLYM 1323
             +D+S YM
Sbjct: 418  QIDTSTYM 425


Top