BLASTX nr result
ID: Coptis24_contig00004456
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004456
(1835 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268833.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 753 0.0
ref|XP_002285072.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 751 0.0
dbj|BAJ53224.1| JHL06P13.3 [Jatropha curcas] 748 0.0
ref|XP_002309623.1| predicted protein [Populus trichocarpa] gi|2... 748 0.0
ref|XP_004171175.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 746 0.0
>ref|XP_002268833.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56 [Vitis vinifera]
gi|297743441|emb|CBI36308.3| unnamed protein product
[Vitis vinifera]
Length = 428
Score = 753 bits (1945), Expect = 0.0
Identities = 376/428 (87%), Positives = 395/428 (92%)
Frame = +1
Query: 40 MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
MGE +DN+ KAPDS+ +K ESAKKGYVGIHSSGFRDFLLKPEL
Sbjct: 1 MGEARDND--AYEEELLDYEEEDEKAPDSVASKAAGESAKKGYVGIHSSGFRDFLLKPEL 58
Query: 220 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
LR+IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA
Sbjct: 59 LRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 118
Query: 400 LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
LVLCHTRELAYQICHEFERFS YLPDIKV+VFYGGVSIKTH+DLLKNECPHIVVGTPGR+
Sbjct: 119 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECPHIVVGTPGRI 178
Query: 580 LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
L LARDKDL LK+VRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 179 LALARDKDLGLKHVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 238
Query: 760 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 239 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS 298
Query: 940 VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
VSRAAELNKLL ECNFPS CIHSGM QEERLTRYK FKEGHKR+LVATDLVGRGIDIERV
Sbjct: 299 VSRAAELNKLLMECNFPSICIHSGMPQEERLTRYKNFKEGHKRILVATDLVGRGIDIERV 358
Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS SDS+VLNQVQERFEVDIKELPE
Sbjct: 359 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPE 418
Query: 1300 DVDSSLYM 1323
+D+S YM
Sbjct: 419 QIDTSTYM 426
>ref|XP_002285072.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Vitis
vinifera]
Length = 428
Score = 751 bits (1939), Expect = 0.0
Identities = 375/428 (87%), Positives = 394/428 (92%)
Frame = +1
Query: 40 MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
MGE +DN+ KAPDS+ K E+AKKGYVGIHSSGFRDFLLKPEL
Sbjct: 1 MGETRDND--AYEEELLDYEEEEDKAPDSVTGKVNGEAAKKGYVGIHSSGFRDFLLKPEL 58
Query: 220 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPV GQVAA
Sbjct: 59 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAA 118
Query: 400 LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
LVLCHTRELAYQICHEFERFS YLPDIKV+VFYGGV+IK H+DLLKNECPHIVVGTPGR+
Sbjct: 119 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRI 178
Query: 580 LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
L LARDKDL+LKNVRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 179 LALARDKDLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 238
Query: 760 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 239 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKS 298
Query: 940 VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
VSRAAELNKLL ECNFPS CIHSGM QEERLTRYKGFKEGHKR+LVATDLVGRGIDIERV
Sbjct: 299 VSRAAELNKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV 358
Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS SDS+VLNQVQERFEVDIKELPE
Sbjct: 359 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPE 418
Query: 1300 DVDSSLYM 1323
+D+S YM
Sbjct: 419 QIDTSTYM 426
>dbj|BAJ53224.1| JHL06P13.3 [Jatropha curcas]
Length = 455
Score = 748 bits (1932), Expect = 0.0
Identities = 373/427 (87%), Positives = 393/427 (92%)
Frame = +1
Query: 40 MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
MGE KDN+ KAPDS+ K ESAKKGYVGIHSSGFRDFLLKPEL
Sbjct: 1 MGEVKDND--AYEEELLDYEEEDEKAPDSVSAKAGAESAKKGYVGIHSSGFRDFLLKPEL 58
Query: 220 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA
Sbjct: 59 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 118
Query: 400 LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
LVLCHTRELAYQICHEFERFS YLPDIKV+VFYGGV+IK H+D+LKNECPHIVVGTPGR+
Sbjct: 119 LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDILKNECPHIVVGTPGRI 178
Query: 580 LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
L LARDKDL LKNVRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 179 LALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 238
Query: 760 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL+E EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 239 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKS 298
Query: 940 VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
V+RAAELNKLL ECNFPS CIHSGM+QEERLTRYKGFKEGHKR+LVATDLVGRGIDIERV
Sbjct: 299 VNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV 358
Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS SDS+VLNQVQ RFEVDIKELPE
Sbjct: 359 NIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPE 418
Query: 1300 DVDSSLY 1320
+D+S Y
Sbjct: 419 QIDTSTY 425
>ref|XP_002309623.1| predicted protein [Populus trichocarpa] gi|222855599|gb|EEE93146.1|
predicted protein [Populus trichocarpa]
Length = 428
Score = 748 bits (1932), Expect = 0.0
Identities = 371/428 (86%), Positives = 393/428 (91%)
Frame = +1
Query: 40 MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
MGE +DN+ KAPDS+G K E+ KKGYVGIHSSGFRDFLLKPEL
Sbjct: 1 MGETRDNDTYEEELLDYEEEDE--KAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPEL 58
Query: 220 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
LR+IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEP +GQV A
Sbjct: 59 LRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIA 118
Query: 400 LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
LVLCHTRELAYQICHEFERFS YLPD KV+VFYGGV+IKTH+DLLKNECPHIVVGTPGR+
Sbjct: 119 LVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRI 178
Query: 580 LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
L LARDKDLSLKNVRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 179 LALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 238
Query: 760 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL+E EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 239 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKS 298
Query: 940 VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
VSRAAELNKLL ECNFPS CIHSGM+QEERL RYKGFKEGHKR+LVATDLVGRGIDIERV
Sbjct: 299 VSRAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERV 358
Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS SDS+VLNQVQERFEVDIKELPE
Sbjct: 359 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPE 418
Query: 1300 DVDSSLYM 1323
+D+S YM
Sbjct: 419 QIDTSTYM 426
>ref|XP_004171175.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Cucumis
sativus]
Length = 427
Score = 746 bits (1927), Expect = 0.0
Identities = 369/428 (86%), Positives = 394/428 (92%)
Frame = +1
Query: 40 MGEPKDNNNXXXXXXXXXXXXXXXKAPDSIGTKPTNESAKKGYVGIHSSGFRDFLLKPEL 219
MGE +DN KAPDS+G K E+ KKGYVGIHSSGFRDFLLKPEL
Sbjct: 1 MGETRDNE---YEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPEL 57
Query: 220 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAA 399
LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQI+PVAGQV+A
Sbjct: 58 LRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSA 117
Query: 400 LVLCHTRELAYQICHEFERFSKYLPDIKVSVFYGGVSIKTHRDLLKNECPHIVVGTPGRV 579
LVLCHTRELAYQICHEFERFS YLPD+KV+VFYGGV+IK H+DLLKNECPHIVVGTPGR+
Sbjct: 118 LVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRI 177
Query: 580 LGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFRMTPHDKQVMMFSATLNKEIR 759
L L+RDKDLSLKNVRHFILDECDKMLESLDMR+DVQ+IF+MTPHDKQVMMFSATL+KEIR
Sbjct: 178 LALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 237
Query: 760 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSENEKNRKLNDLLDGLDFNQVVIFVKS 939
PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE EKNRKLNDLLD LDFNQVVIFVKS
Sbjct: 238 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKS 297
Query: 940 VSRAAELNKLLTECNFPSTCIHSGMTQEERLTRYKGFKEGHKRMLVATDLVGRGIDIERV 1119
V+RAAEL+KLL ECNFPS CIHSGM+QEERLTRYKGFKEGHKR+LVATDLVGRGIDIERV
Sbjct: 298 VNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERV 357
Query: 1120 NIVLNYDMPDSADTYLHRVGRAGRFGTKGLAVTFVSSNSDSEVLNQVQERFEVDIKELPE 1299
NIV+NYDMPDSADTYLHRVGRAGRFGTKGLA+TFVSS +DS+VLN VQERFEVDIKELPE
Sbjct: 358 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPE 417
Query: 1300 DVDSSLYM 1323
+D+S YM
Sbjct: 418 QIDTSTYM 425