BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004451
         (395 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   162   3e-38
ref|XP_002531291.1| pentatricopeptide repeat-containing protein,...   149   2e-34
ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containi...   149   3e-34
ref|NP_187126.1| pentatricopeptide repeat-containing protein [Ar...   124   1e-26
ref|XP_002884467.1| pentatricopeptide repeat-containing protein ...   123   1e-26

>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  162 bits (410), Expect = 3e-38
 Identities = 80/130 (61%), Positives = 97/130 (74%)
 Frame = +3

Query: 3   MVRYTYARRFFFSLSTASKPSWDSTVSLDLCHPTLVLLEKCRTRDHFKQILAQMIRIDLV 182
           M R+    RF  S S + +  WD TVSL L H TL+LLEKC TRDHFKQILAQ++RI+L+
Sbjct: 1   MQRFGRGFRFLSSASASQRVEWDPTVSLALKHATLILLEKCSTRDHFKQILAQIMRINLI 60

Query: 183 AQTFTMSRLLFFSAISHPENIDMAILLFNYHTLTPNLFIYNMMISALSFSTTQSFTIYQS 362
            QTF MSRL+ FSAI+HPEN+DMA+LLF +HT  PNL+IYN MISALS S  QSF  Y S
Sbjct: 61  GQTFPMSRLILFSAITHPENLDMAVLLFRHHTPHPNLYIYNTMISALSLSLNQSFAFYNS 120

Query: 363 MLQLHIYPDK 392
           +L   IYP++
Sbjct: 121 LLSSCIYPNR 130


>ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529124|gb|EEF31104.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  149 bits (376), Expect = 2e-34
 Identities = 76/131 (58%), Positives = 96/131 (73%)
 Frame = +3

Query: 3   MVRYTYARRFFFSLSTASKPSWDSTVSLDLCHPTLVLLEKCRTRDHFKQILAQMIRIDLV 182
           M RY    RF  + +     +WD  VSL+L HP+L+LLEK  +RD+FKQIL QM+R +L+
Sbjct: 1   MYRYGRGIRFLSTATRRKNANWDPIVSLELNHPSLLLLEKSNSRDNFKQILGQMMRSNLI 60

Query: 183 AQTFTMSRLLFFSAISHPENIDMAILLFNYHTLTPNLFIYNMMISALSFSTTQSFTIYQS 362
            QTF MSRL+FFSAISHPEN+DMA++LFN++T  PNL+IYN MISALS +T Q   +Y S
Sbjct: 61  GQTFPMSRLIFFSAISHPENLDMALILFNHYTPYPNLYIYNTMISALSSATAQ--PLYNS 118

Query: 363 MLQLHIYPDKH 395
           ML   I PDKH
Sbjct: 119 MLSTGIGPDKH 129


>ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  149 bits (375), Expect = 3e-34
 Identities = 73/122 (59%), Positives = 91/122 (74%)
 Frame = +3

Query: 27  RFFFSLSTASKPSWDSTVSLDLCHPTLVLLEKCRTRDHFKQILAQMIRIDLVAQTFTMSR 206
           R   S STA + +WD TV L L HP+L+LLEKC +R  FKQIL  M+R +LV QTF MSR
Sbjct: 9   RLLSSTSTAKRINWDPTVDLKLNHPSLILLEKCNSRTQFKQILGHMMRNNLVGQTFPMSR 68

Query: 207 LLFFSAISHPENIDMAILLFNYHTLTPNLFIYNMMISALSFSTTQSFTIYQSMLQLHIYP 386
           LLFFSA+SHPEN+++AILLFN+ T  PNL+I+N MI    FS  ++FTIY+SMLQ   YP
Sbjct: 69  LLFFSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFSNEKAFTIYRSMLQNGTYP 128

Query: 387 DK 392
           D+
Sbjct: 129 DR 130


>ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
           gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical
           protein [Arabidopsis thaliana]
           gi|332640610|gb|AEE74131.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  124 bits (310), Expect = 1e-26
 Identities = 60/122 (49%), Positives = 84/122 (68%)
 Frame = +3

Query: 27  RFFFSLSTASKPSWDSTVSLDLCHPTLVLLEKCRTRDHFKQILAQMIRIDLVAQTFTMSR 206
           R F +   +    WD   SL L H +LVLLE C +R+ FKQ+LAQ++R +L+  TF MSR
Sbjct: 12  RLFGTECGSKTTKWDPVQSLQLNHQSLVLLENCNSRNQFKQVLAQIMRFNLICDTFPMSR 71

Query: 207 LLFFSAISHPENIDMAILLFNYHTLTPNLFIYNMMISALSFSTTQSFTIYQSMLQLHIYP 386
           L+FFSAI++PEN+D+A LLF   T  PN+F+YN MISA+S S  + F +Y SM++  + P
Sbjct: 72  LIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISAVSSSKNECFGLYSSMIRHRVSP 131

Query: 387 DK 392
           D+
Sbjct: 132 DR 133


>ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330307|gb|EFH60726.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 657

 Score =  123 bits (309), Expect = 1e-26
 Identities = 60/122 (49%), Positives = 85/122 (69%)
 Frame = +3

Query: 27  RFFFSLSTASKPSWDSTVSLDLCHPTLVLLEKCRTRDHFKQILAQMIRIDLVAQTFTMSR 206
           R F +   +   +WD   SL L H +LVLLE C +R+ FKQ+LAQ++R +L+  TF MSR
Sbjct: 11  RLFGTECGSKTTTWDPVQSLQLNHQSLVLLENCSSRNQFKQVLAQIMRFNLIGVTFPMSR 70

Query: 207 LLFFSAISHPENIDMAILLFNYHTLTPNLFIYNMMISALSFSTTQSFTIYQSMLQLHIYP 386
           L+FFSAI++PEN+D+A LLF   T  PN+F+YN MISA+S S  + F +Y SM++  + P
Sbjct: 71  LIFFSAITYPENLDLAKLLFLDFTPNPNVFVYNTMISAVSSSKNECFGLYSSMIRYRVSP 130

Query: 387 DK 392
           D+
Sbjct: 131 DR 132