BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004420
         (806 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thalia...   243   3e-62
ref|XP_002869362.1| 40S ribosomal protein S11 [Arabidopsis lyrat...   241   1e-61
ref|NP_001060007.1| Os07g0565000 [Oryza sativa Japonica Group] g...   241   2e-61
ref|XP_002285422.1| PREDICTED: 40S ribosomal protein S11 [Vitis ...   240   3e-61
gb|AFK49430.1| unknown [Lotus japonicus]                              239   5e-61

>ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thaliana]
           gi|11134432|sp|O65569.2|RS112_ARATH RecName: Full=40S
           ribosomal protein S11-2 gi|5708091|emb|CAA18213.2|
           ribosomal protein S11-like [Arabidopsis thaliana]
           gi|7269981|emb|CAB79798.1| ribosomal protein S11-like
           [Arabidopsis thaliana] gi|15028245|gb|AAK76711.1|
           putative ribosomal protein S11 [Arabidopsis thaliana]
           gi|20258899|gb|AAM14143.1| putative ribosomal protein
           S11 [Arabidopsis thaliana] gi|332660410|gb|AEE85810.1|
           40S ribosomal protein S11-2 [Arabidopsis thaliana]
          Length = 159

 Score =  243 bits (621), Expect = 3e-62
 Identities = 119/145 (82%), Positives = 125/145 (86%)
 Frame = +3

Query: 66  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 245
           MAEQTEKAFLKQPKVFL               NRF+K+IGL FKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 246 FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 425
           F G VSIRGRI+SG CHSAKM RTIIVRRDYLHFVKKY+RYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 426 GDRVTIGQCRPLSKTVRFNVLKVVP 500
           GDRVTIGQCRPLSKTVRFNVLKV+P
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIP 145


>ref|XP_002869362.1| 40S ribosomal protein S11 [Arabidopsis lyrata subsp. lyrata]
           gi|297315198|gb|EFH45621.1| 40S ribosomal protein S11
           [Arabidopsis lyrata subsp. lyrata]
          Length = 159

 Score =  241 bits (615), Expect = 1e-61
 Identities = 117/145 (80%), Positives = 123/145 (84%)
 Frame = +3

Query: 66  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 245
           MAEQTEKAFLKQPKVFL               NRF+K+IGL FKTPREAIEG Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKEKRPGKGGNRFWKNIGLGFKTPREAIEGAYVDKKCP 60

Query: 246 FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 425
           F G VSIRGRI++G CHSAKM RTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 426 GDRVTIGQCRPLSKTVRFNVLKVVP 500
           GD VTIGQCRPLSKTVRFNVLKV+P
Sbjct: 121 GDHVTIGQCRPLSKTVRFNVLKVIP 145


>ref|NP_001060007.1| Os07g0565000 [Oryza sativa Japonica Group]
           gi|297603343|ref|NP_001053856.2| Os04g0613600 [Oryza
           sativa Japonica Group] gi|313103641|pdb|3IZ6|P Chain P,
           Localization Of The Small Subunit Ribosomal Proteins
           Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
           Translating 80s Ribosome gi|33146750|dbj|BAC79661.1|
           putative 40S ribosomal protein S11 [Oryza sativa
           Japonica Group] gi|50508298|dbj|BAD30107.1| putative 40S
           ribosomal protein S11 [Oryza sativa Japonica Group]
           gi|113611543|dbj|BAF21921.1| Os07g0565000 [Oryza sativa
           Japonica Group] gi|215768067|dbj|BAH00296.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218195559|gb|EEC77986.1| hypothetical protein
           OsI_17372 [Oryza sativa Indica Group]
           gi|222637292|gb|EEE67424.1| hypothetical protein
           OsJ_24764 [Oryza sativa Japonica Group]
           gi|255675771|dbj|BAF15770.2| Os04g0613600 [Oryza sativa
           Japonica Group]
          Length = 161

 Score =  241 bits (614), Expect = 2e-61
 Identities = 119/145 (82%), Positives = 123/145 (84%)
 Frame = +3

Query: 66  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 245
           MAEQTEKAFLKQPKVFL               NRF+KSIGL FKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 246 FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 425
           F G VSIRGRII+G CHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAHVSPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 426 GDRVTIGQCRPLSKTVRFNVLKVVP 500
           GD V IGQCRPLSKTVRFNVLKV+P
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIP 145


>ref|XP_002285422.1| PREDICTED: 40S ribosomal protein S11 [Vitis vinifera]
           gi|296082102|emb|CBI21107.3| unnamed protein product
           [Vitis vinifera]
          Length = 160

 Score =  240 bits (612), Expect = 3e-61
 Identities = 117/160 (73%), Positives = 128/160 (80%)
 Frame = +3

Query: 66  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 245
           MAEQTEKAFLKQPKVFL               NRF+KSIGL FKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 246 FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 425
           F G VSIRGRI++G CHSAKM+RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGGVSIRGRILAGTCHSAKMMRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 426 GDRVTIGQCRPLSKTVRFNVLKVVPXXXXXXXXXXXFIAV 545
           GD V IGQCRPLSKTVRFNVLKV+P           F+A+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGGKKAFVAM 160


>gb|AFK49430.1| unknown [Lotus japonicus]
          Length = 159

 Score =  239 bits (610), Expect = 5e-61
 Identities = 114/145 (78%), Positives = 124/145 (85%)
 Frame = +3

Query: 66  MAEQTEKAFLKQPKVFLXXXXXXXXXXXXXXXNRFYKSIGLNFKTPREAIEGTYIDKKCP 245
           MAEQTEKAFLKQPKVFL               NRF+KSIGL FKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 246 FVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 425
           F G+VSIRGRI++G CHSAKM RTIIVRR+YLHF+KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 426 GDRVTIGQCRPLSKTVRFNVLKVVP 500
           GD V IGQCRP+SKTVRFNVLKV+P
Sbjct: 121 GDHVIIGQCRPISKTVRFNVLKVIP 145