BLASTX nr result
ID: Coptis24_contig00004419
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004419
(2182 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-lik... 908 0.0
gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo] 900 0.0
ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-pro... 898 0.0
ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-lik... 898 0.0
ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|2... 894 0.0
>ref|XP_002262666.1| PREDICTED: pre-mRNA-processing factor 17-like [Vitis vinifera]
Length = 583
Score = 908 bits (2347), Expect = 0.0
Identities = 432/560 (77%), Positives = 471/560 (84%), Gaps = 1/560 (0%)
Frame = +2
Query: 266 DSXXXXXXXXSKTSAPKIDDTTYALANLSEN-KPIDPSQRVITYNPTYDQLWAPIYGPAH 442
DS SK+SAPK+DDTT ALA + N KPIDP Q V+ +NPTYDQLWAPIYGPAH
Sbjct: 31 DSSPTRIALPSKSSAPKVDDTTLALAIANTNDKPIDPIQHVVPFNPTYDQLWAPIYGPAH 90
Query: 443 PYAKDGIAQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEKM 622
PYAKDGIAQGMRNHKLGFVENAAIEPF+FDEQYNTFHKYGYAADPSA +G+N VGD+E +
Sbjct: 91 PYAKDGIAQGMRNHKLGFVENAAIEPFIFDEQYNTFHKYGYAADPSASAGNNYVGDLEAL 150
Query: 623 KENDGISVYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRKS 802
++NDGISVYNI Q + + +ED D+E V NPAT+ WL KN+KS
Sbjct: 151 EKNDGISVYNIPQHEQKKRKIEKKK-----ESESEENEDVDVEEVQNPATDTWLLKNKKS 205
Query: 803 PWSGKKEGLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQGR 982
PW+GKKEGL ELT V DKS FHGKEE+DYQGR
Sbjct: 206 PWAGKKEGLQTELTEEQKKYAEEYAKKKGEEKGAAEKGEF--VTDKSTFHGKEERDYQGR 263
Query: 983 SWIAAPKDAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWDV 1162
SWIA PKDAKA N+ CYIPKR +HTWSGHTKGVSAIRFFPKHGHL+LSAGMD+KVKIWDV
Sbjct: 264 SWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDV 323
Query: 1163 FNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPYV 1342
FNSGKCMRTYMGH KAVRDISF NDGTKFL+AGYDKNIKYWDTETGQVIS+FSTGKIPYV
Sbjct: 324 FNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYV 383
Query: 1343 VKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSD 1522
VKLNPDDDKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSD
Sbjct: 384 VKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSD 443
Query: 1523 DKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLNK 1702
DKSLRVWEFGIPVVIKYISEPHMHSMP+ISLHPN+NWLAAQSLDNQILIYSTR+RFQLNK
Sbjct: 444 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 503
Query: 1703 KKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEW 1882
KKRFAGHI AGYACQVNFSPDG++VMSGDGEG CW+W+WK+CKV R L+CH+GVCIGCEW
Sbjct: 504 KKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 563
Query: 1883 HPLEQSKVATCGWDGMIHYW 1942
HPLEQSKVATCGWDG+I YW
Sbjct: 564 HPLEQSKVATCGWDGLIKYW 583
>gb|ADN33838.1| pre-mRNA splicing factor [Cucumis melo subsp. melo]
Length = 581
Score = 900 bits (2327), Expect = 0.0
Identities = 426/554 (76%), Positives = 470/554 (84%), Gaps = 4/554 (0%)
Frame = +2
Query: 296 SKTSAPKIDDTTYAL----ANLSENKPIDPSQRVITYNPTYDQLWAPIYGPAHPYAKDGI 463
SKTSAPK+DDT AL AN + +KPIDP+Q ++ +NPTYDQLWAPIYGP+HPYAKDGI
Sbjct: 34 SKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGI 93
Query: 464 AQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEKMKENDGIS 643
AQGMRNHKLGFVENA+IEPF+FDEQYNTFHKYGYAADPSA +G+N +GDME +++ND IS
Sbjct: 94 AQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALQKNDAIS 153
Query: 644 VYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRKSPWSGKKE 823
VYNI Q E+ DM+E+ + VDNPA++ WL KNRKSPWSGKKE
Sbjct: 154 VYNIPQHEQKKRKIEKKKEM---SENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGKKE 210
Query: 824 GLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQGRSWIAAPK 1003
GL ELT DKS FHGKEE+DYQGRSWIA PK
Sbjct: 211 GLQTELTEEQKKYAEEYAKKKGEEKGGEKGEV---TADKSTFHGKEERDYQGRSWIAPPK 267
Query: 1004 DAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWDVFNSGKCM 1183
DAKA N+ CYIPKR +HTWSGHTKGVSAIRFFPKHGHL+LSAGMD+KVKIWDVFNSGKCM
Sbjct: 268 DAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCM 327
Query: 1184 RTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPYVVKLNPDD 1363
RTYMGH +AVRDISF NDG+KFL+AGYDK IKYWDTETGQVIS+FSTGKIPYVVKLNPDD
Sbjct: 328 RTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDD 387
Query: 1364 DKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVW 1543
DKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLRVW
Sbjct: 388 DKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 447
Query: 1544 EFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLNKKKRFAGH 1723
EFGIPVVIKYISEPHMHSMP+IS+HPN+NWLAAQSLDNQILIYSTR+RFQLNKKKRFAGH
Sbjct: 448 EFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 507
Query: 1724 IVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQSK 1903
IVAGYACQVNFSPDG++VMSGDGEG CW+W+WKTCKV R L+CH+GVCIGCEWHPLEQSK
Sbjct: 508 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSK 567
Query: 1904 VATCGWDGMIHYWD 1945
VATCGWDG+I YWD
Sbjct: 568 VATCGWDGLIKYWD 581
>ref|XP_004155354.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-processing factor 17-like
[Cucumis sativus]
Length = 580
Score = 898 bits (2320), Expect = 0.0
Identities = 426/553 (77%), Positives = 470/553 (84%), Gaps = 4/553 (0%)
Frame = +2
Query: 296 SKTSAPKIDDTTYAL----ANLSENKPIDPSQRVITYNPTYDQLWAPIYGPAHPYAKDGI 463
SKTSAPK+DDT AL AN + +KPIDP+Q ++ +NPTYDQLWAPIYGP+HPYAKDGI
Sbjct: 34 SKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGI 93
Query: 464 AQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEKMKENDGIS 643
AQGMRNHKLGFVENA+IEPF+FDEQYNTFHKYGYAADPSA +G+N +GDME +++ND IS
Sbjct: 94 AQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALEKNDAIS 153
Query: 644 VYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRKSPWSGKKE 823
VYNI Q E+ DM+E+ + VDNPA++ WL KNRKSPWSGKKE
Sbjct: 154 VYNIPQHEQKKRKIEKKKKX---SENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGKKE 210
Query: 824 GLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQGRSWIAAPK 1003
GL ELT DKS FHGKEE+DYQGRSWIA PK
Sbjct: 211 GLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTS---DKSTFHGKEERDYQGRSWIAPPK 267
Query: 1004 DAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWDVFNSGKCM 1183
DAKA N+ CYIPKR +HTWSGHTKGVSAIRFFPKHGHL+LSAGMD+KVKIWDVFNSGKCM
Sbjct: 268 DAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCM 327
Query: 1184 RTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPYVVKLNPDD 1363
RTYMGH +AVRDISF NDG+KFL+AGYDK IKYWDTETGQVIS+FSTGKIPYVVKLNPDD
Sbjct: 328 RTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDD 387
Query: 1364 DKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVW 1543
DKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLRVW
Sbjct: 388 DKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 447
Query: 1544 EFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLNKKKRFAGH 1723
EFGIPVVIKYISEPHMHSMP+IS+HPN+NWLAAQSLDNQILIYSTR+RFQLNKKKRFAGH
Sbjct: 448 EFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 507
Query: 1724 IVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQSK 1903
IVAGYACQVNFSPDG++VMSGDGEG CW+W+WKTCKV R L+CH+GVCIGCEWHPLEQSK
Sbjct: 508 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSK 567
Query: 1904 VATCGWDGMIHYW 1942
VATCGWDG+I YW
Sbjct: 568 VATCGWDGLIKYW 580
>ref|XP_004135243.1| PREDICTED: pre-mRNA-processing factor 17-like [Cucumis sativus]
Length = 580
Score = 898 bits (2320), Expect = 0.0
Identities = 425/553 (76%), Positives = 469/553 (84%), Gaps = 4/553 (0%)
Frame = +2
Query: 296 SKTSAPKIDDTTYAL----ANLSENKPIDPSQRVITYNPTYDQLWAPIYGPAHPYAKDGI 463
SKTSAPK+DDT AL AN + +KPIDP+Q ++ +NPTYDQLWAPIYGP+HPYAKDGI
Sbjct: 34 SKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGI 93
Query: 464 AQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEKMKENDGIS 643
AQGMRNHKLGFVENA+IEPF+FDEQYNTFHKYGYAADPSA +G+N +GDME +++ND IS
Sbjct: 94 AQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALEKNDAIS 153
Query: 644 VYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRKSPWSGKKE 823
VYNI Q E+ DM+E+ + VDNPA++ WL KNRKSPWSGKKE
Sbjct: 154 VYNIPQHEQKKRKIEKKKEM---SENEDMEEEVNPAEVDNPASDVWLMKNRKSPWSGKKE 210
Query: 824 GLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQGRSWIAAPK 1003
GL ELT DKS FHGKEE+DYQGRSWIA PK
Sbjct: 211 GLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTS---DKSTFHGKEERDYQGRSWIAPPK 267
Query: 1004 DAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWDVFNSGKCM 1183
DAKA N+ CYIPKR +HTWSGHTKGVSAIRFFPKHGHL+LSAGMD+KVKIWDVFNSGKCM
Sbjct: 268 DAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCM 327
Query: 1184 RTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPYVVKLNPDD 1363
RTYMGH +AVRDISF NDG+KFL+AGYDK IKYWDTETGQVIS+FSTGKIPYVVKLNPDD
Sbjct: 328 RTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDD 387
Query: 1364 DKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVW 1543
DKQNILLAGMSDKKIVQWDMN+GQITQEYDQHLGAVNTITFVD+NRRFVTSSDDKSLRVW
Sbjct: 388 DKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 447
Query: 1544 EFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLNKKKRFAGH 1723
EFGIPVVIKYISEPHMHSMP+IS+HPN+NWLAAQSLDNQILIYSTR+RFQLNKKKRFAGH
Sbjct: 448 EFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 507
Query: 1724 IVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCEWHPLEQSK 1903
IVAGYACQVNFSPDG++VMSGDGEG CW+W+WKTCKV R L+CH+GVCIGCEWHPLEQSK
Sbjct: 508 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSK 567
Query: 1904 VATCGWDGMIHYW 1942
VATCGWDG+I YW
Sbjct: 568 VATCGWDGLIKYW 580
>ref|XP_002312609.1| predicted protein [Populus trichocarpa] gi|222852429|gb|EEE89976.1|
predicted protein [Populus trichocarpa]
Length = 581
Score = 894 bits (2310), Expect = 0.0
Identities = 425/562 (75%), Positives = 470/562 (83%), Gaps = 2/562 (0%)
Frame = +2
Query: 266 DSXXXXXXXXSKTSAPKIDDTTYAL--ANLSENKPIDPSQRVITYNPTYDQLWAPIYGPA 439
DS SK++APK+DDT AL AN + +KPIDP Q + +NPTYDQLWAP+ GPA
Sbjct: 25 DSSSPPRLLPSKSAAPKVDDTMLALTVANQTLSKPIDPVQHAVAFNPTYDQLWAPVLGPA 84
Query: 440 HPYAKDGIAQGMRNHKLGFVENAAIEPFLFDEQYNTFHKYGYAADPSAMSGDNMVGDMEK 619
HPYAKDGIAQGMRNHKLGFVENAAI+ F+FDEQYNTFHKYGYAADPSA +G+N VGD++
Sbjct: 85 HPYAKDGIAQGMRNHKLGFVENAAIDSFVFDEQYNTFHKYGYAADPSASAGNNYVGDLDT 144
Query: 620 MKENDGISVYNISQSXXXXXXXXXXXXXXXGDESGDMDEDFDLEGVDNPATEEWLKKNRK 799
+++ +GISVYNI Q +E GD D+ D E V+NPAT+ WL KNRK
Sbjct: 145 LEKTNGISVYNIPQHEQKKRKIEKKREVT--EEEGDGDDVMDKEEVENPATDAWLMKNRK 202
Query: 800 SPWSGKKEGLVVELTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIDKSMFHGKEEKDYQG 979
SPW+GKKEGL EL+ V DK+ FHGKEE+DYQG
Sbjct: 203 SPWAGKKEGLQTELSEEQQKYAEEHARKKAEKAGGEKGEV---VADKTTFHGKEERDYQG 259
Query: 980 RSWIAAPKDAKAANEKCYIPKRKIHTWSGHTKGVSAIRFFPKHGHLLLSAGMDSKVKIWD 1159
RSW+A PKDAKA+N+ CYIPKR +HTWSGHTKGVSAIRFFPK+GHL+LSAGMD+KVKIWD
Sbjct: 260 RSWLAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 319
Query: 1160 VFNSGKCMRTYMGHGKAVRDISFSNDGTKFLSAGYDKNIKYWDTETGQVISSFSTGKIPY 1339
VFNSGKCMRTYMGH KAVRDISF NDGTKFL+A YDKNIKYWDTETGQVIS+FSTGKIPY
Sbjct: 320 VFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVISTFSTGKIPY 379
Query: 1340 VVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDDNRRFVTSS 1519
VVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVD+NRRFVTSS
Sbjct: 380 VVKLNPDDDKQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDNNRRFVTSS 439
Query: 1520 DDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRDRFQLN 1699
DDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTR+RFQLN
Sbjct: 440 DDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQILIYSTRERFQLN 499
Query: 1700 KKKRFAGHIVAGYACQVNFSPDGQYVMSGDGEGNCWYWNWKTCKVSRKLRCHDGVCIGCE 1879
KKKRFAGHIVAGYACQVNFSPDG++VMSGDGEG CW+W+WK+CKV R L+CH+GVCIGCE
Sbjct: 500 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 559
Query: 1880 WHPLEQSKVATCGWDGMIHYWD 1945
WHPLEQSKVATCGWDG+I YWD
Sbjct: 560 WHPLEQSKVATCGWDGLIKYWD 581