BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004395
         (857 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32365.3| unnamed protein product [Vitis vinifera]              136   1e-42
ref|XP_002275736.1| PREDICTED: small nuclear ribonucleoprotein S...   136   1e-42
ref|XP_002277211.1| PREDICTED: small nuclear ribonucleoprotein S...   136   1e-42
ref|XP_002520764.1| small nuclear ribonucleoprotein sm d1, putat...   135   2e-42
ref|XP_003518667.1| PREDICTED: small nuclear ribonucleoprotein S...   132   2e-42

>emb|CBI32365.3| unnamed protein product [Vitis vinifera]
          Length = 144

 Score =  136 bits (343), Expect(2) = 1e-42
 Identities = 66/67 (98%), Positives = 67/67 (100%)
 Frame = -2

Query: 610 VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKK 431
           VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDS+NLETLLVEETPRVKPKK
Sbjct: 62  VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 121

Query: 430 PTAGRPM 410
           PTAGRPM
Sbjct: 122 PTAGRPM 128



 Score = 63.5 bits (153), Expect(2) = 1e-42
 Identities = 30/31 (96%), Positives = 31/31 (100%)
 Frame = -1

Query: 752 MKLVRFLMKLNNETVSIELKNGTIVHGTITG 660
           MKLVRFLMKLNNETVSIELKNGT+VHGTITG
Sbjct: 31  MKLVRFLMKLNNETVSIELKNGTVVHGTITG 61


>ref|XP_002275736.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis
           vinifera]
          Length = 114

 Score =  136 bits (343), Expect(2) = 1e-42
 Identities = 66/67 (98%), Positives = 67/67 (100%)
 Frame = -2

Query: 610 VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKK 431
           VDISMNTHLKTVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKK
Sbjct: 32  VDISMNTHLKTVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKK 91

Query: 430 PTAGRPM 410
           PTAGRPM
Sbjct: 92  PTAGRPM 98



 Score = 63.5 bits (153), Expect(2) = 1e-42
 Identities = 30/31 (96%), Positives = 31/31 (100%)
 Frame = -1

Query: 752 MKLVRFLMKLNNETVSIELKNGTIVHGTITG 660
           MKLVRFLMKLNNETVSIELKNGT+VHGTITG
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITG 31


>ref|XP_002277211.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
           [Vitis vinifera] gi|225436988|ref|XP_002277231.1|
           PREDICTED: small nuclear ribonucleoprotein Sm D1-like
           isoform 2 [Vitis vinifera]
          Length = 114

 Score =  136 bits (343), Expect(2) = 1e-42
 Identities = 66/67 (98%), Positives = 67/67 (100%)
 Frame = -2

Query: 610 VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKK 431
           VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDS+NLETLLVEETPRVKPKK
Sbjct: 32  VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91

Query: 430 PTAGRPM 410
           PTAGRPM
Sbjct: 92  PTAGRPM 98



 Score = 63.5 bits (153), Expect(2) = 1e-42
 Identities = 30/31 (96%), Positives = 31/31 (100%)
 Frame = -1

Query: 752 MKLVRFLMKLNNETVSIELKNGTIVHGTITG 660
           MKLVRFLMKLNNETVSIELKNGT+VHGTITG
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITG 31


>ref|XP_002520764.1| small nuclear ribonucleoprotein sm d1, putative [Ricinus communis]
           gi|223540149|gb|EEF41726.1| small nuclear
           ribonucleoprotein sm d1, putative [Ricinus communis]
          Length = 114

 Score =  135 bits (340), Expect(2) = 2e-42
 Identities = 65/67 (97%), Positives = 67/67 (100%)
 Frame = -2

Query: 610 VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKK 431
           VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDS+NLETLLVEETPRVKPKK
Sbjct: 32  VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91

Query: 430 PTAGRPM 410
           PTAGRP+
Sbjct: 92  PTAGRPL 98



 Score = 63.9 bits (154), Expect(2) = 2e-42
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = -1

Query: 752 MKLVRFLMKLNNETVSIELKNGTIVHGTITG 660
           MKLVRFLMKLNNETVSIELKNGTIVHGTITG
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITG 31


>ref|XP_003518667.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
           [Glycine max]
          Length = 126

 Score =  132 bits (333), Expect(2) = 2e-42
 Identities = 62/67 (92%), Positives = 67/67 (100%)
 Frame = -2

Query: 610 VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSINLETLLVEETPRVKPKK 431
           VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDS+NLETLLVEETP++KPKK
Sbjct: 42  VDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPKIKPKK 101

Query: 430 PTAGRPM 410
           PTAG+P+
Sbjct: 102 PTAGKPL 108



 Score = 66.6 bits (161), Expect(2) = 2e-42
 Identities = 33/38 (86%), Positives = 34/38 (89%)
 Frame = -1

Query: 752 MKLVRFLMKLNNETVSIELKNGTIVHGTITGGFS*WAL 639
           MKLVRFLMKLNNETVSIELKNGTIVHGTIT   + WAL
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDKLTQWAL 38