BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004388
         (1355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [V...   574   e-161
ref|XP_002520343.1| replication factor C / DNA polymerase III ga...   554   e-155
ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-li...   553   e-155
ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-li...   552   e-155
ref|XP_002302226.1| predicted protein [Populus trichocarpa] gi|2...   551   e-154

>ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
            gi|302141794|emb|CBI18997.3| unnamed protein product
            [Vitis vinifera]
          Length = 360

 Score =  574 bits (1479), Expect = e-161
 Identities = 294/351 (83%), Positives = 315/351 (89%), Gaps = 1/351 (0%)
 Frame = -1

Query: 1340 MSTSNAPMEIDSDDQHQPIIITKGKDIIMQ-PSESAATPWVEKYRPQSLADVAAHRDIVD 1164
            M+ +   M+ID +D H  +   KGK +++  P +  ATPWVEKYRPQSLADVAAHRDIVD
Sbjct: 1    MAEAVTVMDIDEEDNHL-LKANKGKSVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVD 59

Query: 1163 TIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGASYHNMILELNASDDRGIDVVRQ 984
            TIDRLTSEN+LPHLLLYGPPGTGKTSTILAVARKLYG  +HNMILELNASDDRGIDVVRQ
Sbjct: 60   TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVRQ 119

Query: 983  QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNHVNK 804
            QIQDFASTQSFSFG K+SVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF+LICNHVNK
Sbjct: 120  QIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK 179

Query: 803  IIPALQSRCTRFRFAPLDATHVTERLKHVIEAEGLNVDESGLTALVRLSSGDMRKALNIL 624
            IIPALQSRCTRFRFAPLDA HVTERLKHVI AE L+V ESGL ALVRLSSGDMRKALNIL
Sbjct: 180  IIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNIL 239

Query: 623  QSTHMASPHITEEAVYLCTGNPMPKDIEQISFWLLNESFTTGLRNISEMKMIKGLALVDI 444
            QSTHMAS  ITEEAVYLCTGNP+PKDIEQIS+WLLNESF      ISE+KM KGLALVD+
Sbjct: 240  QSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDV 299

Query: 443  VREVTMFIFKIKMPSDVRVNLINDLADIEYRLTFGSNDKLQLGSLIASFTK 291
            VREVTMF+FKIKMPSDVRV LINDLADIEYRL+FG NDKLQLGSLIASFT+
Sbjct: 300  VREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIASFTR 350


>ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540562|gb|EEF42129.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 360

 Score =  554 bits (1427), Expect = e-155
 Identities = 283/345 (82%), Positives = 310/345 (89%), Gaps = 3/345 (0%)
 Frame = -1

Query: 1319 MEIDSD---DQHQPIIITKGKDIIMQPSESAATPWVEKYRPQSLADVAAHRDIVDTIDRL 1149
            M+ID D    Q+Q     KGK++ +   ++ ATPWVEKYRPQSLADVAAHRDIVDTIDRL
Sbjct: 8    MDIDEDVKEKQNQLSKPNKGKNVFV---DTKATPWVEKYRPQSLADVAAHRDIVDTIDRL 64

Query: 1148 TSENKLPHLLLYGPPGTGKTSTILAVARKLYGASYHNMILELNASDDRGIDVVRQQIQDF 969
            T+EN+LPHLLLYGPPGTGKTSTILAVARKLYG  YHNMILELNASDDRGIDVVRQQIQDF
Sbjct: 65   TNENRLPHLLLYGPPGTGKTSTILAVARKLYGVQYHNMILELNASDDRGIDVVRQQIQDF 124

Query: 968  ASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNHVNKIIPAL 789
            ASTQSFSF  K++VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF+LICNHVNKIIPAL
Sbjct: 125  ASTQSFSFDAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPAL 184

Query: 788  QSRCTRFRFAPLDATHVTERLKHVIEAEGLNVDESGLTALVRLSSGDMRKALNILQSTHM 609
            QSRCTRFRFAPLD  HVT+RLKHVIEAEGL+V E GL A+VRLS+GDMRKALNILQSTHM
Sbjct: 185  QSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVPEPGLAAVVRLSNGDMRKALNILQSTHM 244

Query: 608  ASPHITEEAVYLCTGNPMPKDIEQISFWLLNESFTTGLRNISEMKMIKGLALVDIVREVT 429
            AS  ITEEAV+LCTGNP+PKDI+QIS+WLLNESF    + ISE+K  KGLALVDIVREVT
Sbjct: 245  ASQQITEEAVHLCTGNPLPKDIQQISYWLLNESFAESFKRISEIKTKKGLALVDIVREVT 304

Query: 428  MFIFKIKMPSDVRVNLINDLADIEYRLTFGSNDKLQLGSLIASFT 294
            MF+FKIKMPSDVRV LIND+ADIEYRL+FG +DKLQLGSL+ASFT
Sbjct: 305  MFVFKIKMPSDVRVQLINDMADIEYRLSFGCSDKLQLGSLVASFT 349


>ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
          Length = 363

 Score =  553 bits (1424), Expect = e-155
 Identities = 282/353 (79%), Positives = 311/353 (88%), Gaps = 3/353 (0%)
 Frame = -1

Query: 1340 MSTSNAPMEIDSDDQHQPIIITKGKDIIMQPSESAA---TPWVEKYRPQSLADVAAHRDI 1170
            M+ +N  M+IDSDD        K K +++  + +AA    PWVEKYRP SL DVAAHRDI
Sbjct: 1    MAETNHHMDIDSDDHTYTARPDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDI 60

Query: 1169 VDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGASYHNMILELNASDDRGIDVV 990
            VDTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG+ Y NMILELNASDDRGIDVV
Sbjct: 61   VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVV 120

Query: 989  RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNHV 810
            RQQIQDFASTQS SFGVK+SVKLVLLDEADAMTKDAQFALRRVIEKYTK+TRF+LICNHV
Sbjct: 121  RQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHV 180

Query: 809  NKIIPALQSRCTRFRFAPLDATHVTERLKHVIEAEGLNVDESGLTALVRLSSGDMRKALN 630
            NKIIPALQSRCTRFRFAPLDA HVTERLKHVI+AEGL+V++SGL ALVRLS+GDMRKALN
Sbjct: 181  NKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALN 240

Query: 629  ILQSTHMASPHITEEAVYLCTGNPMPKDIEQISFWLLNESFTTGLRNISEMKMIKGLALV 450
            ILQSTHMAS  ITEE VYLCTGNP+PKDIEQIS+WLLNE F    + I EMK  KGLALV
Sbjct: 241  ILQSTHMASQQITEETVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALV 300

Query: 449  DIVREVTMFIFKIKMPSDVRVNLINDLADIEYRLTFGSNDKLQLGSLIASFTK 291
            DIVREVT+F+FKIKMPS VRV L+NDLADIEYRL+FG NDKLQLGS+IASF++
Sbjct: 301  DIVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFSR 353


>ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
            gi|449499057|ref|XP_004160708.1| PREDICTED: replication
            factor C subunit 5-like [Cucumis sativus]
          Length = 363

 Score =  552 bits (1422), Expect = e-155
 Identities = 284/352 (80%), Positives = 312/352 (88%), Gaps = 3/352 (0%)
 Frame = -1

Query: 1340 MSTSNAPMEIDSDD-QHQPIIITKGKDIIMQPS--ESAATPWVEKYRPQSLADVAAHRDI 1170
            MS   + M+ID D+  ++     KGK++    +  E  A PWVEK+RP+SLADVAAHRDI
Sbjct: 1    MSEVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDI 60

Query: 1169 VDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGASYHNMILELNASDDRGIDVV 990
            VDTID+LTSEN+LPHLLLYGPPGTGKTSTILAVARKLYG +YHNMILELNASDDRGIDVV
Sbjct: 61   VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV 120

Query: 989  RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNHV 810
            RQQIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF+LICNHV
Sbjct: 121  RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 809  NKIIPALQSRCTRFRFAPLDATHVTERLKHVIEAEGLNVDESGLTALVRLSSGDMRKALN 630
            NKIIPALQSRCTRFRFAPLD  HVTERL++VIEAE L+V E GL ALVRL +GDMRKALN
Sbjct: 181  NKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN 240

Query: 629  ILQSTHMASPHITEEAVYLCTGNPMPKDIEQISFWLLNESFTTGLRNISEMKMIKGLALV 450
            ILQSTHMAS HITEEAVYLCTGNPMPKDIEQISFWLLNE F+   + ISE+K  KGLALV
Sbjct: 241  ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALV 300

Query: 449  DIVREVTMFIFKIKMPSDVRVNLINDLADIEYRLTFGSNDKLQLGSLIASFT 294
            DIVREVT+F+FKI+MPS++RV LINDLADIEYR+TFG NDKLQLGSLI+SFT
Sbjct: 301  DIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQLGSLISSFT 352


>ref|XP_002302226.1| predicted protein [Populus trichocarpa] gi|222843952|gb|EEE81499.1|
            predicted protein [Populus trichocarpa]
          Length = 363

 Score =  551 bits (1420), Expect = e-154
 Identities = 284/353 (80%), Positives = 310/353 (87%), Gaps = 3/353 (0%)
 Frame = -1

Query: 1340 MSTSNAPMEIDSDDQHQPIII-TKGKDIIMQ--PSESAATPWVEKYRPQSLADVAAHRDI 1170
            M+ + A M+ID ++    +    KGK +++   P    ATPWVEKYRPQSLADVAAHRDI
Sbjct: 1    MAEAIALMDIDEEENQNHLSKPNKGKKVVVPATPPGGKATPWVEKYRPQSLADVAAHRDI 60

Query: 1169 VDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGASYHNMILELNASDDRGIDVV 990
            +DTIDRLTSEN+LPHLLLYGPPGTGKTSTILAVARKLYGA YHNMILELNASDDRGIDVV
Sbjct: 61   IDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 120

Query: 989  RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNHV 810
            R+QIQDFASTQSFSFG KASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF+LICNHV
Sbjct: 121  RKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180

Query: 809  NKIIPALQSRCTRFRFAPLDATHVTERLKHVIEAEGLNVDESGLTALVRLSSGDMRKALN 630
            NKIIPALQSRCTRFRFAPLD  HV ERLKHVIEAEGL+V ESGL AL  LS+GDMRKALN
Sbjct: 181  NKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALN 240

Query: 629  ILQSTHMASPHITEEAVYLCTGNPMPKDIEQISFWLLNESFTTGLRNISEMKMIKGLALV 450
            ILQSTHMAS  ITEE VYLCTGNP+P+D++QI+ WLLNESF    + ISE+K  KGLALV
Sbjct: 241  ILQSTHMASQQITEETVYLCTGNPLPQDVQQITHWLLNESFAESYKRISEIKTRKGLALV 300

Query: 449  DIVREVTMFIFKIKMPSDVRVNLINDLADIEYRLTFGSNDKLQLGSLIASFTK 291
            DIVREVTMF+FKIKM SD+RV LINDLADIEYRL+FG NDKLQLGSLIASFT+
Sbjct: 301  DIVREVTMFVFKIKMQSDIRVPLINDLADIEYRLSFGCNDKLQLGSLIASFTR 353