BLASTX nr result
ID: Coptis24_contig00004379
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004379
(1607 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ... 461 e-127
ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|2... 457 e-126
ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik... 451 e-124
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik... 441 e-121
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik... 440 e-121
>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
putative [Ricinus communis]
Length = 443
Score = 461 bits (1185), Expect = e-127
Identities = 241/427 (56%), Positives = 289/427 (67%), Gaps = 9/427 (2%)
Frame = +1
Query: 97 EKKVYLHYSHTDSCNSARWNARECHEFMYSSRPWQKVVDFYSNVVNGKVPLSSLFQNEDT 276
+ K+Y HY+HTDSC S RW ARE +FMY+ RPWQ+V DFYSNVVNG++ LF+++
Sbjct: 30 QNKIYFHYNHTDSCKSFRWTARESFQFMYA-RPWQEVSDFYSNVVNGRLSFLELFRSQMH 88
Query: 277 KTCIDEVVEEETKGRST---------GRWERVTFKILLSYHGTCFDGWQKQPGLNTVQGI 429
D ++E++ GRW RV FKI LSYHG FDGWQKQPGLNTVQG+
Sbjct: 89 FVRDDAKIQEDSNKTELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTVQGL 148
Query: 430 VERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRKDIRVQDVE 609
VE+SLG+FVD+KKA++LK+ C PLEGC VAGRTDKGV+AL+Q CSFYTWRKD+R ++E
Sbjct: 149 VEKSLGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPHEIE 208
Query: 610 DAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDEGEELGSELGVKGENYII 789
DAIN +APGK+RVISVS+VSR FHPNFSAKWRRY YIFP+ND GE+ SE E+
Sbjct: 209 DAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPIND-GED--SEQSFDSEDL-- 263
Query: 790 EEHNRKLINGYGAHFXXXXXXXXXXXXXXXARDDLAESERGRKPVSFSIDKVNXXXXXXX 969
N + Y D E E +KP FSI +VN
Sbjct: 264 --ENLRSYEKYDEQRNGCAELTSEEHVEELITSDKDELEGAKKPRIFSICRVNQLLQQLE 321
Query: 970 GRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGERVKVMCVELVG 1149
G+ LSYK+FARDTKASR+ GPPTEC IYH RATEA LPC + GE KVMCVELV
Sbjct: 322 GKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLPCPDH-----GEGRKVMCVELVA 376
Query: 1150 NRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLCLLDVGYAEFN 1329
NRFLR+MVRVLV+TSIREAAAGA++DALLKLMD DGLCL DVGY EF+
Sbjct: 377 NRFLRKMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFD 436
Query: 1330 PENCLIP 1350
+ C++P
Sbjct: 437 AQICIVP 443
>ref|XP_002331405.1| predicted protein [Populus trichocarpa] gi|222873619|gb|EEF10750.1|
predicted protein [Populus trichocarpa]
Length = 428
Score = 457 bits (1175), Expect = e-126
Identities = 245/437 (56%), Positives = 298/437 (68%), Gaps = 21/437 (4%)
Frame = +1
Query: 103 KVYLHYSHTDSCNSARWNARECHEFMYSSRPWQKVVDFYSNVVNGKVPLSSLFQNEDTKT 282
KVY+ Y+HTDSC +RW ARE +FM++ RPWQ+VVDFYS VNG++ L LF + T
Sbjct: 7 KVYVQYNHTDSCKFSRWTARESFQFMHA-RPWQEVVDFYSKSVNGQLSLLELFGTQVFFT 65
Query: 283 ----------CIDEV--VEEET---KGRS----TGRWERVTFKILLSYHGTCFDGWQKQP 405
C D++ V ET +G S +GRW RVTFKI+LSYHG FDGWQKQP
Sbjct: 66 MELKKAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQKQP 125
Query: 406 GLNTVQGIVERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRK 585
GLNTVQG+VE+SLGRFVD+KKA++LK++C PLEGC +VAGRTDKGV+AL+Q CSFYTWRK
Sbjct: 126 GLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRK 185
Query: 586 DIRVQDVEDAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLND--EGEELGSE 759
D++ ++EDAIN+ APGK+RV S+S+VSR FHPNFSAKWRRY YIFPLND EE+ E
Sbjct: 186 DVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGE 245
Query: 760 LGVKGENYIIEEHNRKLINGYGAHFXXXXXXXXXXXXXXXARDDLAESERGRKPVSFSID 939
G+ EN+ E+ K N G D E + +KP SFS+
Sbjct: 246 GGI--ENFSSHENCEKQRNECG-------ELASEENVENSIISDEDELQGAKKPRSFSVC 296
Query: 940 KVNXXXXXXXGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGER 1119
+VN G+ LSYKMFARDTKASR+ GPPTEC +YH RATE LP + G
Sbjct: 297 RVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPSPDHEKG----- 351
Query: 1120 VKVMCVELVGNRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLC 1299
++VMCVEL+ NRFLR+MVRVLV+TS+REAAAGA DALLKLMD DGLC
Sbjct: 352 IRVMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLC 411
Query: 1300 LLDVGYAEFNPENCLIP 1350
L+DVGY EF+P NCLIP
Sbjct: 412 LVDVGYTEFDPRNCLIP 428
>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
Length = 433
Score = 451 bits (1159), Expect = e-124
Identities = 244/430 (56%), Positives = 294/430 (68%), Gaps = 13/430 (3%)
Frame = +1
Query: 97 EKKVYLHYSHTDSCNSARWNARECHEFMYSSRPWQKVVDFYSNVVNGKVPLSSLFQNEDT 276
E KVY+HY+HT +RW ARE H+FMY RPWQ+V+DFYSNVV G+ L L E
Sbjct: 19 ENKVYVHYTHTHPTKFSRWTARESHQFMYK-RPWQQVLDFYSNVVTGRCSLLGLLGIETH 77
Query: 277 KTCIDEVVEEE---------TKGRSTGRWERVTFKILLSYHGTCFDGWQKQPGLNTVQGI 429
E+VE TK R GRW R+TFKI+LSYHG FDGWQKQPGLNTVQG+
Sbjct: 78 PIHDGEIVEASDKTEFGNVLTKDRG-GRWARLTFKIVLSYHGASFDGWQKQPGLNTVQGL 136
Query: 430 VERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRKDIRVQDVE 609
VE SLGRFVD++KA++LK+K LP+EG TVAGRTDKGVTAL+Q CSFYTW+KD++VQD+E
Sbjct: 137 VEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVKVQDIE 196
Query: 610 DAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLN--DEGEELG-SELGVKGEN 780
DAIN AAPGKLRVISVS+VSR FHPNFSAKWR YFYIFPLN D+GE++ +E+ ++ +
Sbjct: 197 DAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDDGEQISENEMDIQKIS 256
Query: 781 YIIEEHNRKLINGYGAH-FXXXXXXXXXXXXXXXARDDLAESERGRKPVSFSIDKVNXXX 957
+ N K YG DD E E +KP +FSI +V+
Sbjct: 257 F-----NEK----YGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRVDQLL 307
Query: 958 XXXXGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGERVKVMCV 1137
G+ LSYK+FARDTKASR+ GPPTEC ++H RATEA L + GE KVMC+
Sbjct: 308 RQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQFSD-----DGEGTKVMCI 362
Query: 1138 ELVGNRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLCLLDVGY 1317
ELV NRFLR+MVRVLV+TSIREAAAGA+ DALLKLMD DGLCL+DVG+
Sbjct: 363 ELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGF 422
Query: 1318 AEFNPENCLI 1347
EF+P+ C I
Sbjct: 423 TEFDPQICFI 432
>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
Length = 444
Score = 441 bits (1133), Expect = e-121
Identities = 240/435 (55%), Positives = 290/435 (66%), Gaps = 18/435 (4%)
Frame = +1
Query: 97 EKKVYLHYSHTDSCNSARWNARECHEFMYSSRPWQKVVDFYSNVVNGKVPLSSLFQNE-- 270
++K YLHY+HTD C SARW ARE ++FMY RPWQ+V+DFYS+ VNG+ LSSL E
Sbjct: 28 QRKDYLHYNHTDRCRSARWTARESYQFMYG-RPWQEVLDFYSHAVNGRFSLSSLLGTEIC 86
Query: 271 ----DTKTCIDEVVEEETKGR---STGRWERVTFKILLSYHGTCFDGWQKQPGLNTVQGI 429
D +T + E + TGRW R TFKI+LSY G FDGWQKQPGLNTVQG+
Sbjct: 87 RDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQGL 146
Query: 430 VERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRKDIRVQDVE 609
VERSLG+FVD+KKA+ LKDKCLPLEGC VAGRTDKGVTAL+Q CSFYTWR D++ QD+E
Sbjct: 147 VERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDIE 206
Query: 610 DAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDEGEELGSELGV------- 768
D+IN AAPGKLR SVS+VSR FHPNFSAKWRRY YI PLND GE + +
Sbjct: 207 DSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLND-GENMEPDSTTWENVENR 265
Query: 769 KGENYI-IEEHN-RKLINGYGAHFXXXXXXXXXXXXXXXARDDLAESERGRKPVSFSIDK 942
+ EN++ IE N K ++G + ++L ++ KP +FSI +
Sbjct: 266 EEENFVKIEASNGEKCVDGIHDNLVLSPND-----------EELVSAD---KPQTFSITR 311
Query: 943 VNXXXXXXXGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGERV 1122
VN G+ LSYKMFARDTKASR+ GPPTEC +YH RA E LPC + G+
Sbjct: 312 VNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGR----- 366
Query: 1123 KVMCVELVGNRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLCL 1302
VMCVELV NRFLR+MVRVLV+T+IREAAAGA DALL+LMD DGL L
Sbjct: 367 SVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSL 426
Query: 1303 LDVGYAEFNPENCLI 1347
+DVGY +F+ + C I
Sbjct: 427 VDVGYTDFDSQICFI 441
>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
Length = 444
Score = 440 bits (1131), Expect = e-121
Identities = 240/435 (55%), Positives = 289/435 (66%), Gaps = 18/435 (4%)
Frame = +1
Query: 97 EKKVYLHYSHTDSCNSARWNARECHEFMYSSRPWQKVVDFYSNVVNGKVPLSSLFQNE-- 270
++K YLHY+HTD C SARW ARE ++FMY RPWQ+V+DFYS+ VNG+ LSSL E
Sbjct: 28 QRKDYLHYNHTDRCRSARWTARESYQFMYG-RPWQEVLDFYSHAVNGRFSLSSLLGTEIC 86
Query: 271 ----DTKTCIDEVVEEETKGR---STGRWERVTFKILLSYHGTCFDGWQKQPGLNTVQGI 429
D +T + E + TGRW R TFKI+LSY G FDGWQKQPGLNTVQG+
Sbjct: 87 RDHDDAETPLIYNSAELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQGL 146
Query: 430 VERSLGRFVDDKKAEKLKDKCLPLEGCTTVAGRTDKGVTALKQACSFYTWRKDIRVQDVE 609
VERSLG+FVD+KKA+ LKDKCLPLEGC VAGRTDKGVTAL+Q CSFYTWR D++ QD+E
Sbjct: 147 VERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDIE 206
Query: 610 DAINEAAPGKLRVISVSKVSREFHPNFSAKWRRYFYIFPLNDEGEELGSELGV------- 768
D+IN AAPGKLR SVS+VSR FHPNFSAKWRRY YI PLND GE + +
Sbjct: 207 DSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLND-GENMEPDSTTWENVENR 265
Query: 769 KGENYI-IEEHN-RKLINGYGAHFXXXXXXXXXXXXXXXARDDLAESERGRKPVSFSIDK 942
+ EN++ IE N K ++G + +L ++ KP +FSI +
Sbjct: 266 EEENFVKIEASNGEKCVDGIHDNLVLSPND-----------QELVSAD---KPQTFSITR 311
Query: 943 VNXXXXXXXGRSLSYKMFARDTKASRSTGPPTECIIYHVRATEATLPCDNKVPGKGGERV 1122
VN G+ LSYKMFARDTKASR+ GPPTEC +YH RA E LPC + G+
Sbjct: 312 VNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPCLEQGVGR----- 366
Query: 1123 KVMCVELVGNRFLRRMVRVLVSTSIREAAAGADNDALLKLMDXXXXXXXXXXXXXDGLCL 1302
VMCVELV NRFLR+MVRVLV+T+IREAAAGA DALL+LMD DGL L
Sbjct: 367 SVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSL 426
Query: 1303 LDVGYAEFNPENCLI 1347
+DVGY +F+ + C I
Sbjct: 427 VDVGYTDFDSQICFI 441