BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004262
         (467 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266748.1| PREDICTED: splicing factor 3A subunit 2 [Vit...   116   1e-32
emb|CBI30170.3| unnamed protein product [Vitis vinifera]              116   1e-32
ref|XP_003543690.1| PREDICTED: splicing factor 3A subunit 2-like...   114   9e-31
ref|XP_003545711.1| PREDICTED: splicing factor 3A subunit 2-like...   114   9e-31
ref|XP_002519451.1| Splicing factor 3A subunit, putative [Ricinu...   109   3e-29

>ref|XP_002266748.1| PREDICTED: splicing factor 3A subunit 2 [Vitis vinifera]
          Length = 357

 Score =  116 bits (291), Expect(2) = 1e-32
 Identities = 54/60 (90%), Positives = 58/60 (96%)
 Frame = +2

Query: 2   PGYRVTKQFDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAAD 181
           PGYRVTKQFDPETKQRSLLFQIEYPEIEDL KPRHRFMSS+EQR++S DKRYQYLLFAA+
Sbjct: 113 PGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSFEQRVQSFDKRYQYLLFAAE 172



 Score = 48.1 bits (113), Expect(2) = 1e-32
 Identities = 25/33 (75%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
 Frame = +3

Query: 291 SKMFTLQLYFKVKPPEA---QPAPVAIGTEAPG 380
           SKMFTLQLYFK KPPEA   QPA  A GT APG
Sbjct: 201 SKMFTLQLYFKTKPPEANKPQPASAANGTTAPG 233


>emb|CBI30170.3| unnamed protein product [Vitis vinifera]
          Length = 241

 Score =  116 bits (291), Expect(2) = 1e-32
 Identities = 54/60 (90%), Positives = 58/60 (96%)
 Frame = +2

Query: 2   PGYRVTKQFDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAAD 181
           PGYRVTKQFDPETKQRSLLFQIEYPEIEDL KPRHRFMSS+EQR++S DKRYQYLLFAA+
Sbjct: 113 PGYRVTKQFDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSFEQRVQSFDKRYQYLLFAAE 172



 Score = 48.1 bits (113), Expect(2) = 1e-32
 Identities = 25/33 (75%), Positives = 25/33 (75%), Gaps = 3/33 (9%)
 Frame = +3

Query: 291 SKMFTLQLYFKVKPPEA---QPAPVAIGTEAPG 380
           SKMFTLQLYFK KPPEA   QPA  A GT APG
Sbjct: 201 SKMFTLQLYFKTKPPEANKPQPASAANGTTAPG 233


>ref|XP_003543690.1| PREDICTED: splicing factor 3A subunit 2-like [Glycine max]
          Length = 350

 Score =  114 bits (286), Expect(2) = 9e-31
 Identities = 53/60 (88%), Positives = 57/60 (95%)
 Frame = +2

Query: 2   PGYRVTKQFDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAAD 181
           PGYRVTKQ+DPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQR++  DK YQYLLFAA+
Sbjct: 113 PGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKSYQYLLFAAE 172



 Score = 43.9 bits (102), Expect(2) = 9e-31
 Identities = 24/34 (70%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
 Frame = +3

Query: 291 SKMFTLQLYFKVKPPEA---QPAPVAIGTEAPGV 383
           SKMFTLQLYFK KPPEA   QPA  A GT   GV
Sbjct: 201 SKMFTLQLYFKSKPPEANKPQPATTANGTAPSGV 234


>ref|XP_003545711.1| PREDICTED: splicing factor 3A subunit 2-like [Glycine max]
          Length = 349

 Score =  114 bits (286), Expect(2) = 9e-31
 Identities = 53/60 (88%), Positives = 57/60 (95%)
 Frame = +2

Query: 2   PGYRVTKQFDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAAD 181
           PGYRVTKQ+DPETKQRSLLFQIEYPEIEDL KPRHRFMSSYEQR++  DKRYQYLLFAA+
Sbjct: 113 PGYRVTKQYDPETKQRSLLFQIEYPEIEDLMKPRHRFMSSYEQRVQPFDKRYQYLLFAAE 172



 Score = 43.9 bits (102), Expect(2) = 9e-31
 Identities = 24/34 (70%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
 Frame = +3

Query: 291 SKMFTLQLYFKVKPPEA---QPAPVAIGTEAPGV 383
           SKMFTLQLYFK KPPEA   QPA  A GT   GV
Sbjct: 201 SKMFTLQLYFKSKPPEANKPQPASTANGTAPSGV 234


>ref|XP_002519451.1| Splicing factor 3A subunit, putative [Ricinus communis]
           gi|223541314|gb|EEF42865.1| Splicing factor 3A subunit,
           putative [Ricinus communis]
          Length = 327

 Score =  109 bits (273), Expect(2) = 3e-29
 Identities = 52/60 (86%), Positives = 56/60 (93%)
 Frame = +2

Query: 2   PGYRVTKQFDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRIESCDKRYQYLLFAAD 181
           PGYRVTKQFD ETKQRSLLFQIEYPEIED TKPRHRFMSS+EQR++  DKRYQYLLFAA+
Sbjct: 113 PGYRVTKQFDHETKQRSLLFQIEYPEIEDNTKPRHRFMSSFEQRMQPYDKRYQYLLFAAE 172



 Score = 43.9 bits (102), Expect(2) = 3e-29
 Identities = 23/34 (67%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = +3

Query: 291 SKMFTLQLYFKVKPPEA---QPAPVAIGTEAPGV 383
           SKMFTLQLYFK KPPEA   Q  P   G  APGV
Sbjct: 201 SKMFTLQLYFKTKPPEANKSQAPPAPNGVAAPGV 234