BLASTX nr result

ID: Coptis24_contig00004259 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004259
         (2325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34627.3| unnamed protein product [Vitis vinifera]              315   3e-83
gb|ADL36810.1| NAC domain class transcription factor [Malus x do...   292   2e-76
ref|XP_002300524.1| NAC domain protein, IPR003441 [Populus trich...   291   4e-76
emb|CBI23105.3| unnamed protein product [Vitis vinifera]              289   3e-75
ref|XP_002270158.1| PREDICTED: uncharacterized protein LOC100255...   289   3e-75

>emb|CBI34627.3| unnamed protein product [Vitis vinifera]
          Length = 632

 Score =  315 bits (808), Expect = 3e-83
 Identities = 216/558 (38%), Positives = 290/558 (51%), Gaps = 48/558 (8%)
 Frame = -3

Query: 2155 MAVLPLNFLPVGYRFSPTDEELVNFYLKLKIEGQESKVEAISEVDVCKWEPWDLPSLSVI 1976
            M  + +  LP+G+RF PTDEEL+N YLKLKIEG+ S+VE I E+DVCKWEPWDLP LS+I
Sbjct: 1    MGAVSMESLPLGFRFRPTDEELINHYLKLKIEGRHSEVEVIRELDVCKWEPWDLPGLSMI 60

Query: 1975 KNEDPEWFFFCPRDQKYPKGRRSNRATEKGYWKATGKDRTIKSRSSGMKLIGMKKTLVFH 1796
            K +DPEWFFFCPRD+KYP GRRSNRAT+ GYWKATGKDRTIKSR S    IGMKKTLVF+
Sbjct: 61   KADDPEWFFFCPRDRKYPNGRRSNRATDAGYWKATGKDRTIKSRKSSAS-IGMKKTLVFY 119

Query: 1795 TGRAPRGKRTHWIMHEYR----TSCAEEGPFVLCRLFNK--EKADS-ECDEIEPTGSSPT 1637
             GRAP+G+RT+WI HEYR     S + +G +VL RLF K  E+ D+ + DE+EPTG SP 
Sbjct: 120  KGRAPKGQRTNWIFHEYRVIDSASDSSQGAYVLFRLFYKPNERIDNPKYDEVEPTGLSPV 179

Query: 1636 ATNSS----IESLRPEKALMQETSGADQIRENSTGEEKSDNLTSCTPLPEQSYSNSCQAS 1469
             T SS       L  E  +    +G +         +KSDN+T   P+P +S  N    S
Sbjct: 180  TTKSSPGDTSSDLVQETEMSDTPTGGESENFERWLNDKSDNVTPTAPVPVESCCNGYIPS 239

Query: 1468 DGEDHGADLRVVEVDPQFD--YVGMXXXXXXXXXXXDQALTPPHVNMSTGQGFSYSGSAL 1295
            D EDH     V EV+ Q    Y  +           D  +  P   +      +Y GS  
Sbjct: 240  DVEDH-----VAEVEEQVSEVYPPLGEDSRSYDGQIDCKVFSPESQLYPELATAYMGSPF 294

Query: 1294 ATEFGNAHN----QDGSTEQDLFDLDFMEKVLGNQDYCG--DSTSQKHYAVESE---PEV 1142
            +++FG+       QDG +E ++   +F +++  N D C   +S S+K+ AV SE   P  
Sbjct: 295  SSDFGDGQTGLRFQDGVSEPEVCLTEFWDEIFNNHDECSGEESNSKKNSAVGSETLVPGQ 354

Query: 1141 AFIYAVQQSGESVFGKDSASCSDADNEGLQAQTYSKVEASPW------------YGLARG 998
              +   +  G+S   K+  S SD D +  Q Q   ++ AS W              ++ G
Sbjct: 355  VSLLPNRPHGDS-HTKNGGSNSDTDTDMAQMQYDPEMRASKWSDEYIVGKDHLQMDVSPG 413

Query: 997  YAQTQNVSEINSIDGFYGDEFWSGNM------SIGFGNPAALESPAD--------DSATY 860
            Y Q Q          F+  EF SGN+      SIG    +A+ + A         + ++ 
Sbjct: 414  YHQPQ--------ASFHFPEFKSGNIGALGDDSIGRDASSAVSAMASLDALLNNLEESST 465

Query: 859  YSNSIKNIGSLTRATPLXXXXXXXXXXXKLRTHHPQSHTSSHNLVYQGNAPRRIRLQKKL 680
              N +   G     T +           K+RT  P       N V QG APRRIRLQ   
Sbjct: 466  QKNHVNYGGDPVGGTGI-----------KIRTRQPLQRQMPDNFVTQGIAPRRIRLQMHK 514

Query: 679  TRRVASFKGRESSGSAKD 626
                +S   +E+  + K+
Sbjct: 515  VMYASSNDEQEAQPTLKE 532


>gb|ADL36810.1| NAC domain class transcription factor [Malus x domestica]
          Length = 850

 Score =  292 bits (748), Expect = 2e-76
 Identities = 211/598 (35%), Positives = 303/598 (50%), Gaps = 51/598 (8%)
 Frame = -3

Query: 2155 MAVLPLNFLPVGYRFSPTDEELVNFYLKLKIEGQESKVEAISEVDVCKWEPWDLPSLSVI 1976
            MA L +  LP+G+RF PTDEEL+N YL+LKI G++S+V  I E+DVC+WEPWDLP LSVI
Sbjct: 1    MAELSMESLPLGFRFRPTDEELINHYLRLKINGRDSEVRVIPEIDVCRWEPWDLPKLSVI 60

Query: 1975 KNEDPEWFFFCPRDQKYPKGRRSNRATEKGYWKATGKDRTIKSR-----SSGMKLIGMKK 1811
            K++D EWFFFCPRD+KYP G RSNRAT+ GYWKATGKDRTIKSR     S+    +GMKK
Sbjct: 61   KSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRQCKSASNSNGQVGMKK 120

Query: 1810 TLVFHTGRAPRGKRTHWIMHEYRTSCAE-------EGPFVLCRLFNK--EKAD-SECDEI 1661
            TLVF+ GRAP+G+RT WIMHEYR +  E       +G FVLCRLF+K  EKAD  + DE+
Sbjct: 121  TLVFYRGRAPKGERTSWIMHEYRATQKELDGTGPGQGAFVLCRLFHKPEEKADVPKYDEV 180

Query: 1660 EPTGSSPTATNSSIESLRPEKALMQETSGADQIRENSTG------EEKSDNLT--SCTPL 1505
            E TG SPT T SS +       ++QET+ ++   EN          + SDN+T  +  PL
Sbjct: 181  EQTGLSPTTTKSSPDE---SSDIIQETATSEIQGENQAEGIMRWLTDNSDNVTPDALPPL 237

Query: 1504 PEQSYSNSCQASDGEDHGA------DLRVVEVDPQFDYVGMXXXXXXXXXXXDQALTPPH 1343
            P+        ASD ED GA          +E +P F                 +  TP H
Sbjct: 238  PD-----IFMASDVEDQGAVETGIQGHLTIEENPAF-------YESLGGPIDCKVFTPLH 285

Query: 1342 VNMSTGQGFSYSGSALATEFGNAHN----QDGSTEQDLFDLDFMEKVLGNQDY---CGDS 1184
              ++  +   + GS   ++FGN  N    QDG+ EQD+   + +++  GN  Y   C +S
Sbjct: 286  SQIN-AELEHFMGSPFTSDFGNYDNGLYFQDGTCEQDVSLTELLDE-FGNSHYESSCEES 343

Query: 1183 TSQKHYAVESEP----EVAFIYAVQQSGESVFGKDSASCSDADNEGLQAQTYSKVEASP- 1019
            TSQK+  V +E            V       +    A+ +  D + + +  Y++   S  
Sbjct: 344  TSQKNLVVGNETYLSGNACTTLPVNSCFNGAWDNTDANITQHDLQRMASGLYNEQFGSDD 403

Query: 1018 --------WYGLARGYAQTQNVSEINSIDGFYGDEFWSGNMSIGFGNPAALESPADDSAT 863
                    W   A+     Q     N  DG+  +  ++    +     ++++   DDS T
Sbjct: 404  LQNTSFGYWQAEAQASLDDQKPRMGNMADGYLSECSFAEQFPV-----SSVDDGLDDS-T 457

Query: 862  YYSNSIKNIGSLTRATPLXXXXXXXXXXXKLRTHHPQSHTSSHNLVYQGNAPRRIRL--Q 689
             +++ + ++G                   K+R   PQ   ++ N VYQG A RRI L   
Sbjct: 458  SWNHGVDHVGG---------------TGIKIRARGPQLQPNTDNFVYQGTAARRIYLSVD 502

Query: 688  KKLTRRVASFKGRESSGSAKDQEIKPKILESTGETKENATVVLQSANVAASEDGVDIS 515
            +         +G E+  S ++ E++  I +   +  ++ T   Q    A   D  ++S
Sbjct: 503  RSSGSNTNGNEGNENY-SREEDEVQSTITQPREDIGQSPTSDEQEEEHAIFNDKEELS 559


>ref|XP_002300524.1| NAC domain protein, IPR003441 [Populus trichocarpa]
            gi|222847782|gb|EEE85329.1| NAC domain protein, IPR003441
            [Populus trichocarpa]
          Length = 537

 Score =  291 bits (746), Expect = 4e-76
 Identities = 201/546 (36%), Positives = 287/546 (52%), Gaps = 28/546 (5%)
 Frame = -3

Query: 2152 AVLPLNFLPVGYRFSPTDEELVNFYLKLKIEGQESKVEAISEVDVCKWEPWDLPSLSVIK 1973
            A++ ++ LP+G+RF PTDEEL++ YL+LKI G++S+VE I E+DVCKWEPWDLP  SVIK
Sbjct: 1    AMVSMDSLPLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDVCKWEPWDLPGQSVIK 60

Query: 1972 NEDPEWFFFCPRDQKYPKGRRSNRATEKGYWKATGKDRTIKSRSS--GMKLIGMKKTLVF 1799
             +DPEWFFFCPRD+KYP G RSNRAT+ GYWKATGKDRTIKSR S     LIGMKKTLVF
Sbjct: 61   TDDPEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRKSAGNTTLIGMKKTLVF 120

Query: 1798 HTGRAPRGKRTHWIMHEYRTSCAE---EGP----FVLCRLFNKEKADS---ECDEIEPTG 1649
            + GRAP+GKRT+WIMHEYR +  +    GP    FVL RLF K +  +   + DEIE  G
Sbjct: 121  YRGRAPKGKRTNWIMHEYRPTEEDLDGTGPGQVAFVLFRLFRKPEERTNGVKYDEIEQIG 180

Query: 1648 SSPTATNSSIESLRPEKALMQETSGADQIRENSTGEEK-----SDNLTSCTPLPEQSYSN 1484
             SPTA  SS ++   +  L+QET+ +D      + + K     SDN+T+ +  P    SN
Sbjct: 181  YSPTAAKSSPDNASSD--LVQETATSDMHSGKQSEDIKMWLTESDNVTANSVGPVDICSN 238

Query: 1483 SCQASDGEDHGADLRVVEVDPQFDYVGMXXXXXXXXXXXDQALTPPHVNMSTGQGFSYSG 1304
                SD ED   +   VE  P  D   +            +  +P   ++    G  Y  
Sbjct: 239  RHATSDIEDQVPEATAVEACPLLDESSL-IHEPVSGELDREVFSPVQSHIPADLG-CYID 296

Query: 1303 SALATEFGNAHN----QDGSTEQDLFDLDFMEKVLGNQDYC-GDSTSQKHYAVESEPEVA 1139
            S  A++FGN  N    QD S EQD+   + +++   N D C G+ TS+ +  V SE ++ 
Sbjct: 297  SPYASDFGNDQNGFPFQDVSIEQDVSITELLDRFFNNHDECSGEETSKNNLGVGSETQL- 355

Query: 1138 FIYAVQQSGESVFGKDSASCSDADNEGLQAQTYSKVEASPWYGLARG--YAQTQNVSEIN 965
                 Q    + +  D+   S  +N  LQ  +  +V A P         +     +  + 
Sbjct: 356  ---CGQIPPGNSYAPDNGIYSFMNN--LQHVSLMRVPAWPSDQFCSNELFQMQPALGTLR 410

Query: 964  SIDGFYGDEFWSGNMSIGFGNPAALESPADDSATYYSNSIKNIGSLT-RATPLXXXXXXX 788
            +    +  E   GN+S    N    ++P+  SA      + ++   T + T +       
Sbjct: 411  APTPVFYGELGRGNISHFGNNFVGQDAPSAKSAISSFGVLNSMEEATSQMTSVDNGSGVS 470

Query: 787  XXXXKLRTHHPQSHTSSHNLVYQGNAPRRIRLQ---KKLTRRVASFKGRESSGSAKDQEI 617
                ++R   P+    S   + QG+ PRRI LQ   K L+  V   K +++     + E+
Sbjct: 471  GTGIRIRARQPRVRPQSDIFIAQGSGPRRILLQLQTKLLSESVGYCKVKDAGYIEDEDEV 530

Query: 616  KPKILE 599
            +  + E
Sbjct: 531  QSSVTE 536


>emb|CBI23105.3| unnamed protein product [Vitis vinifera]
          Length = 578

 Score =  289 bits (739), Expect = 3e-75
 Identities = 198/555 (35%), Positives = 258/555 (46%), Gaps = 19/555 (3%)
 Frame = -3

Query: 2155 MAVLPLNFLPVGYRFSPTDEELVNFYLKLKIEGQESKVEAISEVDVCKWEPWDLPSLSVI 1976
            MAVL  N LP+G+RF PTDEEL+  YL+LKI G + +V  I E+DVCKWEPWDLP LS I
Sbjct: 1    MAVLSFNSLPLGFRFRPTDEELITHYLRLKISGNDEEVRVIREIDVCKWEPWDLPDLSEI 60

Query: 1975 KNEDPEWFFFCPRDQKYPKGRRSNRATEKGYWKATGKDRTIKSRSSGMKLIGMKKTLVFH 1796
            +  D EWFFFCPRD+KYP G R NRAT  GYWKATG+DR IKS++   +L+GMKKTLVFH
Sbjct: 61   RTNDMEWFFFCPRDRKYPNGHRLNRATAAGYWKATGRDRQIKSKT---RLVGMKKTLVFH 117

Query: 1795 TGRAPRGKRTHWIMHEYRTSCAE-------EGPFVLCRLFNK--EKAD-SECDEIEPTGS 1646
            TGRAP GKRT W+MHEYR +  E       +  FVLCRLF K  EKA+ S  DEIEPT  
Sbjct: 118  TGRAPHGKRTVWVMHEYRATAKELDGTHPGQAAFVLCRLFKKQDEKAEGSNPDEIEPTVP 177

Query: 1645 SPTATNS----SIESLRPEKALMQETSGADQIRENSTGEEKSDNLTSCTPLPEQSYSNSC 1478
            SPT  NS      E   P+ A +++              E  D +T+ + +P    SN  
Sbjct: 178  SPTPANSPEETEFEVALPQVAPVEKQEEEQPGFAEGCPGENPDEMTAESSVPVGFCSNPL 237

Query: 1477 QASDGEDHGADLRVVEVDPQFDYVGMXXXXXXXXXXXDQALTPPHVNMSTGQGFSYSGSA 1298
             A D ED  A L   EVDP                   Q  +P H     G   SY    
Sbjct: 238  NAYDEEDSLAKLTAAEVDPSLQEDFGFFQDQMLEQLDYQLFSPVHSQWHMGLE-SYVSYP 296

Query: 1297 LATEFGNAHNQD---GSTEQDLFDLDFMEKVLGNQDYC--GDSTSQKHYAVESEPEVAFI 1133
            +   F N HN +   G+ E D    +F+E VL     C   D+ SQ    VE +     I
Sbjct: 297  VTGNFSNGHNGENEYGTNEPDPDVTEFLESVLKENGSCSESDTVSQTQLDVEFDASAVII 356

Query: 1132 YAVQQSGESVFGKDSASCSDADNEGLQAQTYSKVEASPWYGLARGYAQTQNVSEINSIDG 953
                                   + ++ +   ++E               N+S   +  G
Sbjct: 357  -----------------------DNIKTEALQEMET--------------NISAFKTTTG 379

Query: 952  FYGDEFWSGNMSIGFGNPAALESPADDSATYYSNSIKNIGSLTRATPLXXXXXXXXXXXK 773
                E+ SGNM     N          +     N        +  T             K
Sbjct: 380  NSAVEY-SGNMGFSHNNFGDDAFSVGSTVNQLDNLFNRFEESSSYTNAVGSSDITGPVIK 438

Query: 772  LRTHHPQSHTSSHNLVYQGNAPRRIRLQKKLTRRVASFKGRESSGSAKDQEIKPKILEST 593
             RT  PQ  + ++N   QG A RRIRLQ KL  R A    R+ +   + +  +    +++
Sbjct: 439  RRTRQPQIQSDANNCGPQGTARRRIRLQTKLEVRHACSMSRDLNCKEEAEVGQASQSDTS 498

Query: 592  GETKENATVVLQSAN 548
            G T EN  + ++  +
Sbjct: 499  GTTDENQKIEVKKVD 513


>ref|XP_002270158.1| PREDICTED: uncharacterized protein LOC100255616 [Vitis vinifera]
          Length = 653

 Score =  289 bits (739), Expect = 3e-75
 Identities = 198/555 (35%), Positives = 258/555 (46%), Gaps = 19/555 (3%)
 Frame = -3

Query: 2155 MAVLPLNFLPVGYRFSPTDEELVNFYLKLKIEGQESKVEAISEVDVCKWEPWDLPSLSVI 1976
            MAVL  N LP+G+RF PTDEEL+  YL+LKI G + +V  I E+DVCKWEPWDLP LS I
Sbjct: 76   MAVLSFNSLPLGFRFRPTDEELITHYLRLKISGNDEEVRVIREIDVCKWEPWDLPDLSEI 135

Query: 1975 KNEDPEWFFFCPRDQKYPKGRRSNRATEKGYWKATGKDRTIKSRSSGMKLIGMKKTLVFH 1796
            +  D EWFFFCPRD+KYP G R NRAT  GYWKATG+DR IKS++   +L+GMKKTLVFH
Sbjct: 136  RTNDMEWFFFCPRDRKYPNGHRLNRATAAGYWKATGRDRQIKSKT---RLVGMKKTLVFH 192

Query: 1795 TGRAPRGKRTHWIMHEYRTSCAE-------EGPFVLCRLFNK--EKAD-SECDEIEPTGS 1646
            TGRAP GKRT W+MHEYR +  E       +  FVLCRLF K  EKA+ S  DEIEPT  
Sbjct: 193  TGRAPHGKRTVWVMHEYRATAKELDGTHPGQAAFVLCRLFKKQDEKAEGSNPDEIEPTVP 252

Query: 1645 SPTATNS----SIESLRPEKALMQETSGADQIRENSTGEEKSDNLTSCTPLPEQSYSNSC 1478
            SPT  NS      E   P+ A +++              E  D +T+ + +P    SN  
Sbjct: 253  SPTPANSPEETEFEVALPQVAPVEKQEEEQPGFAEGCPGENPDEMTAESSVPVGFCSNPL 312

Query: 1477 QASDGEDHGADLRVVEVDPQFDYVGMXXXXXXXXXXXDQALTPPHVNMSTGQGFSYSGSA 1298
             A D ED  A L   EVDP                   Q  +P H     G   SY    
Sbjct: 313  NAYDEEDSLAKLTAAEVDPSLQEDFGFFQDQMLEQLDYQLFSPVHSQWHMGLE-SYVSYP 371

Query: 1297 LATEFGNAHNQD---GSTEQDLFDLDFMEKVLGNQDYC--GDSTSQKHYAVESEPEVAFI 1133
            +   F N HN +   G+ E D    +F+E VL     C   D+ SQ    VE +     I
Sbjct: 372  VTGNFSNGHNGENEYGTNEPDPDVTEFLESVLKENGSCSESDTVSQTQLDVEFDASAVII 431

Query: 1132 YAVQQSGESVFGKDSASCSDADNEGLQAQTYSKVEASPWYGLARGYAQTQNVSEINSIDG 953
                                   + ++ +   ++E               N+S   +  G
Sbjct: 432  -----------------------DNIKTEALQEMET--------------NISAFKTTTG 454

Query: 952  FYGDEFWSGNMSIGFGNPAALESPADDSATYYSNSIKNIGSLTRATPLXXXXXXXXXXXK 773
                E+ SGNM     N          +     N        +  T             K
Sbjct: 455  NSAVEY-SGNMGFSHNNFGDDAFSVGSTVNQLDNLFNRFEESSSYTNAVGSSDITGPVIK 513

Query: 772  LRTHHPQSHTSSHNLVYQGNAPRRIRLQKKLTRRVASFKGRESSGSAKDQEIKPKILEST 593
             RT  PQ  + ++N   QG A RRIRLQ KL  R A    R+ +   + +  +    +++
Sbjct: 514  RRTRQPQIQSDANNCGPQGTARRRIRLQTKLEVRHACSMSRDLNCKEEAEVGQASQSDTS 573

Query: 592  GETKENATVVLQSAN 548
            G T EN  + ++  +
Sbjct: 574  GTTDENQKIEVKKVD 588


Top