BLASTX nr result
ID: Coptis24_contig00004235
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004235 (1416 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002279575.1| PREDICTED: ribosome biogenesis protein WDR12... 531 e-148 ref|XP_002324109.1| predicted protein [Populus trichocarpa] gi|2... 510 e-142 ref|XP_003516844.1| PREDICTED: ribosome biogenesis protein WDR12... 509 e-142 ref|XP_003543948.1| PREDICTED: ribosome biogenesis protein WDR12... 509 e-142 ref|XP_003524849.1| PREDICTED: ribosome biogenesis protein WDR12... 509 e-142 >ref|XP_002279575.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Vitis vinifera] gi|296082215|emb|CBI21220.3| unnamed protein product [Vitis vinifera] Length = 438 Score = 531 bits (1369), Expect = e-148 Identities = 241/332 (72%), Positives = 279/332 (84%) Frame = +2 Query: 5 PRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSLV 184 PRKQE+P LHDDWVSAV+GSNP FI TG YD R+WK+ G CTH+LEGH DAITSV + Sbjct: 102 PRKQEEPSLHDDWVSAVDGSNPGFILTGCYDGLGRLWKAAGSCTHILEGHNDAITSVKFI 161 Query: 185 NSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHPS 364 + KG+ES + +ATASKDRT+RLWKFDA E ++ P KI A+K+L GH A+V SV P+ Sbjct: 162 DPKGLESVNNSVVATASKDRTLRLWKFDAGERHDLPLKIRAFKILHGHNASVQSVAVQPT 221 Query: 365 GDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCVS 544 G+MVCSGSWD TINLWRT++ + EGDL S+KKRKV +A+ESQ EGEAVST VGHTQCVS Sbjct: 222 GNMVCSGSWDCTINLWRTDEFDVEGDLVSVKKRKVNNEAEESQAEGEAVSTIVGHTQCVS 281 Query: 545 SVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPV 724 SV+WP+ E IYSASWDHS+RRWD+ETGKD+ N+F GK LNC+DVGGE S+LIAAGGSD Sbjct: 282 SVIWPQHETIYSASWDHSVRRWDVETGKDSWNLFCGKALNCLDVGGESSALIAAGGSDTT 341 Query: 725 LRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLAV 904 LRIWDPR+PG + P FQFSSH+SWI ACKWH KSWFHLLSASYDGKVMLWDLRTAWPLAV Sbjct: 342 LRIWDPRKPGTLTPVFQFSSHTSWISACKWHNKSWFHLLSASYDGKVMLWDLRTAWPLAV 401 Query: 905 IDSHKDKVLCADWWKDDCVISGGADLELCISS 1000 IDSH +KVLCADWWK D V+SGGAD +LCISS Sbjct: 402 IDSHNNKVLCADWWKGDSVVSGGADSKLCISS 433 >ref|XP_002324109.1| predicted protein [Populus trichocarpa] gi|222867111|gb|EEF04242.1| predicted protein [Populus trichocarpa] Length = 433 Score = 510 bits (1314), Expect = e-142 Identities = 237/334 (70%), Positives = 275/334 (82%) Frame = +2 Query: 2 VPRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSL 181 V +K+++P LHDDWVSAV+GS PRFI TG YD+ RVWK+ G CTH+LEGH AITSVS+ Sbjct: 99 VLQKEDEPSLHDDWVSAVDGSCPRFILTGCYDNLGRVWKAAGECTHILEGHGGAITSVSV 158 Query: 182 VNSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHP 361 VNS+G +S T +ATASKD T+RLWKFD EEH +QP KI A+K+L+GH A V SV + Sbjct: 159 VNSEGTDSVT---VATASKDETLRLWKFDTEEHLDQPSKIRAFKILRGHNAPVQSVAAEA 215 Query: 362 SGDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCV 541 SG M+CSGSWD TINLWRTN+S+ E DL SIKKRKV A ESQLEG A+ST VGHTQCV Sbjct: 216 SGSMICSGSWDCTINLWRTNESDTESDLVSIKKRKVKNKAGESQLEGGALSTLVGHTQCV 275 Query: 542 SSVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDP 721 SSV WPE IYSASWDHS+RRWD+E GKD N+F GK L+C+ VGGEGS+LIAAGGSDP Sbjct: 276 SSVYWPEPNTIYSASWDHSVRRWDVEMGKDLSNIFCGKALHCLHVGGEGSALIAAGGSDP 335 Query: 722 VLRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLA 901 +LR+WDPR+PG AP +QFSSH+SWI ACKWH +S FHLLSASYDGK+MLWDLRTAWPLA Sbjct: 336 ILRVWDPRKPGTSAPIYQFSSHNSWISACKWHSESLFHLLSASYDGKLMLWDLRTAWPLA 395 Query: 902 VIDSHKDKVLCADWWKDDCVISGGADLELCISSG 1003 +IDSH+DKVLCADWWK D VISGG D +L ISSG Sbjct: 396 IIDSHEDKVLCADWWKGDSVISGGVDSKLRISSG 429 >ref|XP_003516844.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max] Length = 435 Score = 509 bits (1312), Expect = e-142 Identities = 233/332 (70%), Positives = 274/332 (82%) Frame = +2 Query: 5 PRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSLV 184 PRK+EDP LHDDWVSAV+GS+ RF TG YD RVWK GLCTH+LEGH DAITSVS++ Sbjct: 103 PRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILEGHSDAITSVSII 162 Query: 185 NSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHPS 364 N KG E+ T +ATASKDRT+RLWK +A +H N P ++ AYK+L+GH ++V V + Sbjct: 163 NPKGEETVT---VATASKDRTLRLWKLNAGDHVNNPMRVRAYKILRGHKSSVQCVAVQTA 219 Query: 365 GDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCVS 544 G+MVCS SWD TINLW+TND AE DL S KKRK+G +ESQLEGEA +T VGHTQCVS Sbjct: 220 GEMVCSASWDCTINLWQTNDFNAEDDLVS-KKRKIGAQVEESQLEGEAFTTLVGHTQCVS 278 Query: 545 SVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPV 724 +VVWP+ E IYSASWDHSIR+WD+ETGK+ ++F GKVLNC+D+GGEGS+LIAAGGSDPV Sbjct: 279 AVVWPQRESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSTLIAAGGSDPV 338 Query: 725 LRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLAV 904 +RIWDPR+PG AP FQFSSH SW+ ACKWH +SWFHLLSASYDGKVMLWDLRTAWPL+V Sbjct: 339 IRIWDPRKPGTSAPVFQFSSHMSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSV 398 Query: 905 IDSHKDKVLCADWWKDDCVISGGADLELCISS 1000 I+SH DKVL ADWWK + VISGGAD +LCISS Sbjct: 399 IESHSDKVLSADWWKSNSVISGGADSKLCISS 430 >ref|XP_003543948.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max] Length = 435 Score = 509 bits (1311), Expect = e-142 Identities = 232/332 (69%), Positives = 274/332 (82%) Frame = +2 Query: 5 PRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSLV 184 PRK+EDP LHDDWVSAV+GS+ RF TG YD RVWK GLCTH+LEGH DAITS+S++ Sbjct: 103 PRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILEGHSDAITSISII 162 Query: 185 NSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHPS 364 N KG E+ T +ATASKDRT+RLWK +A +H N P ++ AYK+L+GH ++V V + Sbjct: 163 NPKGEETVT---VATASKDRTLRLWKLNAGDHVNNPMRVRAYKILRGHKSSVQCVAVQTA 219 Query: 365 GDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCVS 544 G+MVCS SWD TINLW+TND AE DL S KKRK+G +ESQLEGEA +T VGHTQCVS Sbjct: 220 GEMVCSASWDCTINLWQTNDFNAEDDLVS-KKRKIGAQVEESQLEGEAFTTLVGHTQCVS 278 Query: 545 SVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPV 724 +VVWP+ E IYSASWDHSIR+WD+ETGK+ ++F GKVLNC+D+GGEGS+LIAAGGSDPV Sbjct: 279 AVVWPQRESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSTLIAAGGSDPV 338 Query: 725 LRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLAV 904 +RIWDPR+PG AP FQFSSH SW+ ACKWH +SWFHLLSASYDGKVMLWDLRTAWPL+V Sbjct: 339 IRIWDPRKPGTSAPVFQFSSHMSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSV 398 Query: 905 IDSHKDKVLCADWWKDDCVISGGADLELCISS 1000 I+SH DKVL ADWWK + VISGGAD +LCISS Sbjct: 399 IESHSDKVLSADWWKSNSVISGGADSKLCISS 430 >ref|XP_003524849.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max] Length = 427 Score = 509 bits (1311), Expect = e-142 Identities = 234/332 (70%), Positives = 274/332 (82%) Frame = +2 Query: 5 PRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSLV 184 PRK+EDP LHDDWVSAV+GS+ RF TG YD RVWK GLCTH+L+GH DA+TSVS++ Sbjct: 95 PRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILDGHSDAVTSVSII 154 Query: 185 NSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHPS 364 N KG E+ T +ATASKDRT+RLWK + E+ N P ++ AYK+L+GH ++V SV S Sbjct: 155 NPKGAETVT---VATASKDRTLRLWKLNTEDPVNHPMRVRAYKILRGHKSSVQSVAVQTS 211 Query: 365 GDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCVS 544 G+MVCSGSWD TINLW+TND AE D S KKRKVG +ESQLEGEA +T VGHTQCVS Sbjct: 212 GEMVCSGSWDCTINLWQTNDFNAEDDQVS-KKRKVGGQVEESQLEGEAFTTLVGHTQCVS 270 Query: 545 SVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPV 724 SVVWP+ E IYSASWDHSIR+WD+E GK+ ++F GKVLNC+D+GGEGS+LIAAGGSDPV Sbjct: 271 SVVWPQRELIYSASWDHSIRKWDVEIGKNLTDIFCGKVLNCLDIGGEGSALIAAGGSDPV 330 Query: 725 LRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLAV 904 LRIWDPR+PG AP FQF+SH+SW+ ACKWH +SWFHLLSASYDGKVMLWDLRTAWPL+V Sbjct: 331 LRIWDPRKPGTSAPVFQFASHTSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSV 390 Query: 905 IDSHKDKVLCADWWKDDCVISGGADLELCISS 1000 I+SH DKVL ADWWK D VISGGAD +LCISS Sbjct: 391 IESHSDKVLSADWWKSDSVISGGADSKLCISS 422