BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004235
         (1416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279575.1| PREDICTED: ribosome biogenesis protein WDR12...   531   e-148
ref|XP_002324109.1| predicted protein [Populus trichocarpa] gi|2...   510   e-142
ref|XP_003516844.1| PREDICTED: ribosome biogenesis protein WDR12...   509   e-142
ref|XP_003543948.1| PREDICTED: ribosome biogenesis protein WDR12...   509   e-142
ref|XP_003524849.1| PREDICTED: ribosome biogenesis protein WDR12...   509   e-142

>ref|XP_002279575.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Vitis vinifera]
            gi|296082215|emb|CBI21220.3| unnamed protein product
            [Vitis vinifera]
          Length = 438

 Score =  531 bits (1369), Expect = e-148
 Identities = 241/332 (72%), Positives = 279/332 (84%)
 Frame = +2

Query: 5    PRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSLV 184
            PRKQE+P LHDDWVSAV+GSNP FI TG YD   R+WK+ G CTH+LEGH DAITSV  +
Sbjct: 102  PRKQEEPSLHDDWVSAVDGSNPGFILTGCYDGLGRLWKAAGSCTHILEGHNDAITSVKFI 161

Query: 185  NSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHPS 364
            + KG+ES  +  +ATASKDRT+RLWKFDA E ++ P KI A+K+L GH A+V SV   P+
Sbjct: 162  DPKGLESVNNSVVATASKDRTLRLWKFDAGERHDLPLKIRAFKILHGHNASVQSVAVQPT 221

Query: 365  GDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCVS 544
            G+MVCSGSWD TINLWRT++ + EGDL S+KKRKV  +A+ESQ EGEAVST VGHTQCVS
Sbjct: 222  GNMVCSGSWDCTINLWRTDEFDVEGDLVSVKKRKVNNEAEESQAEGEAVSTIVGHTQCVS 281

Query: 545  SVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPV 724
            SV+WP+ E IYSASWDHS+RRWD+ETGKD+ N+F GK LNC+DVGGE S+LIAAGGSD  
Sbjct: 282  SVIWPQHETIYSASWDHSVRRWDVETGKDSWNLFCGKALNCLDVGGESSALIAAGGSDTT 341

Query: 725  LRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLAV 904
            LRIWDPR+PG + P FQFSSH+SWI ACKWH KSWFHLLSASYDGKVMLWDLRTAWPLAV
Sbjct: 342  LRIWDPRKPGTLTPVFQFSSHTSWISACKWHNKSWFHLLSASYDGKVMLWDLRTAWPLAV 401

Query: 905  IDSHKDKVLCADWWKDDCVISGGADLELCISS 1000
            IDSH +KVLCADWWK D V+SGGAD +LCISS
Sbjct: 402  IDSHNNKVLCADWWKGDSVVSGGADSKLCISS 433


>ref|XP_002324109.1| predicted protein [Populus trichocarpa] gi|222867111|gb|EEF04242.1|
            predicted protein [Populus trichocarpa]
          Length = 433

 Score =  510 bits (1314), Expect = e-142
 Identities = 237/334 (70%), Positives = 275/334 (82%)
 Frame = +2

Query: 2    VPRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSL 181
            V +K+++P LHDDWVSAV+GS PRFI TG YD+  RVWK+ G CTH+LEGH  AITSVS+
Sbjct: 99   VLQKEDEPSLHDDWVSAVDGSCPRFILTGCYDNLGRVWKAAGECTHILEGHGGAITSVSV 158

Query: 182  VNSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHP 361
            VNS+G +S T   +ATASKD T+RLWKFD EEH +QP KI A+K+L+GH A V SV +  
Sbjct: 159  VNSEGTDSVT---VATASKDETLRLWKFDTEEHLDQPSKIRAFKILRGHNAPVQSVAAEA 215

Query: 362  SGDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCV 541
            SG M+CSGSWD TINLWRTN+S+ E DL SIKKRKV   A ESQLEG A+ST VGHTQCV
Sbjct: 216  SGSMICSGSWDCTINLWRTNESDTESDLVSIKKRKVKNKAGESQLEGGALSTLVGHTQCV 275

Query: 542  SSVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDP 721
            SSV WPE   IYSASWDHS+RRWD+E GKD  N+F GK L+C+ VGGEGS+LIAAGGSDP
Sbjct: 276  SSVYWPEPNTIYSASWDHSVRRWDVEMGKDLSNIFCGKALHCLHVGGEGSALIAAGGSDP 335

Query: 722  VLRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLA 901
            +LR+WDPR+PG  AP +QFSSH+SWI ACKWH +S FHLLSASYDGK+MLWDLRTAWPLA
Sbjct: 336  ILRVWDPRKPGTSAPIYQFSSHNSWISACKWHSESLFHLLSASYDGKLMLWDLRTAWPLA 395

Query: 902  VIDSHKDKVLCADWWKDDCVISGGADLELCISSG 1003
            +IDSH+DKVLCADWWK D VISGG D +L ISSG
Sbjct: 396  IIDSHEDKVLCADWWKGDSVISGGVDSKLRISSG 429


>ref|XP_003516844.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]
          Length = 435

 Score =  509 bits (1312), Expect = e-142
 Identities = 233/332 (70%), Positives = 274/332 (82%)
 Frame = +2

Query: 5    PRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSLV 184
            PRK+EDP LHDDWVSAV+GS+ RF  TG YD   RVWK  GLCTH+LEGH DAITSVS++
Sbjct: 103  PRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILEGHSDAITSVSII 162

Query: 185  NSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHPS 364
            N KG E+ T   +ATASKDRT+RLWK +A +H N P ++ AYK+L+GH ++V  V    +
Sbjct: 163  NPKGEETVT---VATASKDRTLRLWKLNAGDHVNNPMRVRAYKILRGHKSSVQCVAVQTA 219

Query: 365  GDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCVS 544
            G+MVCS SWD TINLW+TND  AE DL S KKRK+G   +ESQLEGEA +T VGHTQCVS
Sbjct: 220  GEMVCSASWDCTINLWQTNDFNAEDDLVS-KKRKIGAQVEESQLEGEAFTTLVGHTQCVS 278

Query: 545  SVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPV 724
            +VVWP+ E IYSASWDHSIR+WD+ETGK+  ++F GKVLNC+D+GGEGS+LIAAGGSDPV
Sbjct: 279  AVVWPQRESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSTLIAAGGSDPV 338

Query: 725  LRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLAV 904
            +RIWDPR+PG  AP FQFSSH SW+ ACKWH +SWFHLLSASYDGKVMLWDLRTAWPL+V
Sbjct: 339  IRIWDPRKPGTSAPVFQFSSHMSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSV 398

Query: 905  IDSHKDKVLCADWWKDDCVISGGADLELCISS 1000
            I+SH DKVL ADWWK + VISGGAD +LCISS
Sbjct: 399  IESHSDKVLSADWWKSNSVISGGADSKLCISS 430


>ref|XP_003543948.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]
          Length = 435

 Score =  509 bits (1311), Expect = e-142
 Identities = 232/332 (69%), Positives = 274/332 (82%)
 Frame = +2

Query: 5    PRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSLV 184
            PRK+EDP LHDDWVSAV+GS+ RF  TG YD   RVWK  GLCTH+LEGH DAITS+S++
Sbjct: 103  PRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILEGHSDAITSISII 162

Query: 185  NSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHPS 364
            N KG E+ T   +ATASKDRT+RLWK +A +H N P ++ AYK+L+GH ++V  V    +
Sbjct: 163  NPKGEETVT---VATASKDRTLRLWKLNAGDHVNNPMRVRAYKILRGHKSSVQCVAVQTA 219

Query: 365  GDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCVS 544
            G+MVCS SWD TINLW+TND  AE DL S KKRK+G   +ESQLEGEA +T VGHTQCVS
Sbjct: 220  GEMVCSASWDCTINLWQTNDFNAEDDLVS-KKRKIGAQVEESQLEGEAFTTLVGHTQCVS 278

Query: 545  SVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPV 724
            +VVWP+ E IYSASWDHSIR+WD+ETGK+  ++F GKVLNC+D+GGEGS+LIAAGGSDPV
Sbjct: 279  AVVWPQRESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSTLIAAGGSDPV 338

Query: 725  LRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLAV 904
            +RIWDPR+PG  AP FQFSSH SW+ ACKWH +SWFHLLSASYDGKVMLWDLRTAWPL+V
Sbjct: 339  IRIWDPRKPGTSAPVFQFSSHMSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSV 398

Query: 905  IDSHKDKVLCADWWKDDCVISGGADLELCISS 1000
            I+SH DKVL ADWWK + VISGGAD +LCISS
Sbjct: 399  IESHSDKVLSADWWKSNSVISGGADSKLCISS 430


>ref|XP_003524849.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max]
          Length = 427

 Score =  509 bits (1311), Expect = e-142
 Identities = 234/332 (70%), Positives = 274/332 (82%)
 Frame = +2

Query: 5    PRKQEDPCLHDDWVSAVNGSNPRFIFTGSYDSFARVWKSDGLCTHVLEGHKDAITSVSLV 184
            PRK+EDP LHDDWVSAV+GS+ RF  TG YD   RVWK  GLCTH+L+GH DA+TSVS++
Sbjct: 95   PRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILDGHSDAVTSVSII 154

Query: 185  NSKGVESDTSLHIATASKDRTVRLWKFDAEEHYNQPRKITAYKVLKGHTAAVHSVVSHPS 364
            N KG E+ T   +ATASKDRT+RLWK + E+  N P ++ AYK+L+GH ++V SV    S
Sbjct: 155  NPKGAETVT---VATASKDRTLRLWKLNTEDPVNHPMRVRAYKILRGHKSSVQSVAVQTS 211

Query: 365  GDMVCSGSWDSTINLWRTNDSEAEGDLASIKKRKVGTDAKESQLEGEAVSTFVGHTQCVS 544
            G+MVCSGSWD TINLW+TND  AE D  S KKRKVG   +ESQLEGEA +T VGHTQCVS
Sbjct: 212  GEMVCSGSWDCTINLWQTNDFNAEDDQVS-KKRKVGGQVEESQLEGEAFTTLVGHTQCVS 270

Query: 545  SVVWPECEDIYSASWDHSIRRWDIETGKDTLNVFTGKVLNCVDVGGEGSSLIAAGGSDPV 724
            SVVWP+ E IYSASWDHSIR+WD+E GK+  ++F GKVLNC+D+GGEGS+LIAAGGSDPV
Sbjct: 271  SVVWPQRELIYSASWDHSIRKWDVEIGKNLTDIFCGKVLNCLDIGGEGSALIAAGGSDPV 330

Query: 725  LRIWDPRRPGNVAPTFQFSSHSSWIMACKWHKKSWFHLLSASYDGKVMLWDLRTAWPLAV 904
            LRIWDPR+PG  AP FQF+SH+SW+ ACKWH +SWFHLLSASYDGKVMLWDLRTAWPL+V
Sbjct: 331  LRIWDPRKPGTSAPVFQFASHTSWVSACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSV 390

Query: 905  IDSHKDKVLCADWWKDDCVISGGADLELCISS 1000
            I+SH DKVL ADWWK D VISGGAD +LCISS
Sbjct: 391  IESHSDKVLSADWWKSDSVISGGADSKLCISS 422