BLASTX nr result

ID: Coptis24_contig00004230 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004230
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003603284.1| hypothetical protein MTR_3g105880 [Medicago ...    72   6e-11
ref|XP_003603282.1| hypothetical protein MTR_3g105880 [Medicago ...    72   6e-11
ref|XP_003603281.1| hypothetical protein MTR_3g105880 [Medicago ...    72   6e-11
ref|XP_002309679.1| predicted protein [Populus trichocarpa] gi|2...    69   5e-10
ref|XP_002335604.1| predicted protein [Populus trichocarpa] gi|2...    68   9e-10

>ref|XP_003603284.1| hypothetical protein MTR_3g105880 [Medicago truncatula]
           gi|355492332|gb|AES73535.1| hypothetical protein
           MTR_3g105880 [Medicago truncatula]
          Length = 362

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/44 (79%), Positives = 38/44 (86%)
 Frame = -1

Query: 482 RCLAPSTAGGEGCDNMTMILVQFKKPIASASPVEEEQISESEPA 351
           RCLAPSTAGGEGCDNMTMILVQFKKP  S++P  EEQ S +EPA
Sbjct: 307 RCLAPSTAGGEGCDNMTMILVQFKKPAQSSAPA-EEQSSSNEPA 349


>ref|XP_003603282.1| hypothetical protein MTR_3g105880 [Medicago truncatula]
           gi|355492330|gb|AES73533.1| hypothetical protein
           MTR_3g105880 [Medicago truncatula]
          Length = 334

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/44 (79%), Positives = 38/44 (86%)
 Frame = -1

Query: 482 RCLAPSTAGGEGCDNMTMILVQFKKPIASASPVEEEQISESEPA 351
           RCLAPSTAGGEGCDNMTMILVQFKKP  S++P  EEQ S +EPA
Sbjct: 279 RCLAPSTAGGEGCDNMTMILVQFKKPAQSSAPA-EEQSSSNEPA 321


>ref|XP_003603281.1| hypothetical protein MTR_3g105880 [Medicago truncatula]
           gi|355492329|gb|AES73532.1| hypothetical protein
           MTR_3g105880 [Medicago truncatula]
           gi|388521645|gb|AFK48884.1| unknown [Medicago
           truncatula]
          Length = 362

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 35/44 (79%), Positives = 38/44 (86%)
 Frame = -1

Query: 482 RCLAPSTAGGEGCDNMTMILVQFKKPIASASPVEEEQISESEPA 351
           RCLAPSTAGGEGCDNMTMILVQFKKP  S++P  EEQ S +EPA
Sbjct: 307 RCLAPSTAGGEGCDNMTMILVQFKKPAQSSAPA-EEQSSSNEPA 349


>ref|XP_002309679.1| predicted protein [Populus trichocarpa] gi|222855655|gb|EEE93202.1|
           predicted protein [Populus trichocarpa]
          Length = 358

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 34/47 (72%), Positives = 38/47 (80%)
 Frame = -1

Query: 482 RCLAPSTAGGEGCDNMTMILVQFKKPIASASPVEEEQISESEPAVNE 342
           RCLAPS  GGEGCDNMTMI+VQFKKPI S +   +EQ S+SEPAV E
Sbjct: 307 RCLAPSIIGGEGCDNMTMIVVQFKKPIGSTASA-DEQSSQSEPAVAE 352


>ref|XP_002335604.1| predicted protein [Populus trichocarpa] gi|222834670|gb|EEE73133.1|
           predicted protein [Populus trichocarpa]
          Length = 67

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 33/44 (75%), Positives = 37/44 (84%)
 Frame = -1

Query: 482 RCLAPSTAGGEGCDNMTMILVQFKKPIASASPVEEEQISESEPA 351
           RCLAPSTAGGEGCDNMTMI+VQFKKPI   +   +EQ S+SEPA
Sbjct: 16  RCLAPSTAGGEGCDNMTMIVVQFKKPIGPPASA-DEQSSQSEPA 58


Top