BLASTX nr result
ID: Coptis24_contig00004220
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004220
(2090 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI35029.3| unnamed protein product [Vitis vinifera] 616 e-174
ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat... 616 e-174
ref|NP_189505.2| pentatricopeptide repeat-containing protein [Ar... 530 e-148
ref|NP_189507.2| pentatricopeptide repeat-containing protein [Ar... 528 e-147
ref|XP_002877120.1| pentatricopeptide repeat-containing protein ... 464 e-128
>emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 616 bits (1588), Expect = e-174
Identities = 298/474 (62%), Positives = 365/474 (77%)
Frame = +2
Query: 2 MQQLKTIHAIFITNGHHDNNYAMSKLISFTALSNNGNLIYASQLFDQIPNPNSFIYNTLI 181
M+Q K IHA+FI NG H NNYA+SKLISF ALSN+G+L YAS +F QI NPN F YNTLI
Sbjct: 17 MRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLI 76
Query: 182 RAYSRSTQPQVSLHYFCLMLKDDCIVPDYHTLPFVLIACANACCVSLGEGIHCWVLKNGW 361
RAYSRS+ PQ++LHYF LML D+ + PD HT PF++ AC N+ + LG+ IH WVLKNG
Sbjct: 77 RAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGV 136
Query: 362 GFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFR 541
SD+H+QTAL+RFY EC ++ + RK+FDEI DV QWNV +NG +R G+ EAL+AFR
Sbjct: 137 ASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFR 196
Query: 542 DMLSSGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYAKC 721
+ML SGVE DE+C+ T L CA GAL+QG WIHEYV KR DVF+GTALVDMYAKC
Sbjct: 197 NMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKC 256
Query: 722 GCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVVLLAV 901
GCID++VEVF M KRN FSW+AMIGGFALHG ++A+ CL+RM +EDGLRPDGVVLL V
Sbjct: 257 GCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGV 316
Query: 902 LTACTHAGCEEEGRLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRP 1081
+ AC HAG +EEG+ LL NM+A YGI+PKHEHYSC VDLLCRAG+L+EAL+LI+ MPM+P
Sbjct: 317 IMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMKP 376
Query: 1082 LASVWGSLLSACKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAG 1261
A+VWG+LLS C+TH N + + G +EDGAYVQLSNIYL AQ+C DA
Sbjct: 377 RAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLAAQKCEDAC 436
Query: 1262 RIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSLRIS 1423
RIR M+ DK IK PGCS+IEV G+VN+FV+GD+ HP +IH +LDL+SL+ S
Sbjct: 437 RIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIHEMLDLVSLQHS 490
>ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 616 bits (1588), Expect = e-174
Identities = 298/474 (62%), Positives = 365/474 (77%)
Frame = +2
Query: 2 MQQLKTIHAIFITNGHHDNNYAMSKLISFTALSNNGNLIYASQLFDQIPNPNSFIYNTLI 181
M+Q K IHA+FI NG H NNYA+SKLISF ALSN+G+L YAS +F QI NPN F YNTLI
Sbjct: 17 MRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLI 76
Query: 182 RAYSRSTQPQVSLHYFCLMLKDDCIVPDYHTLPFVLIACANACCVSLGEGIHCWVLKNGW 361
RAYSRS+ PQ++LHYF LML D+ + PD HT PF++ AC N+ + LG+ IH WVLKNG
Sbjct: 77 RAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGV 136
Query: 362 GFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFR 541
SD+H+QTAL+RFY EC ++ + RK+FDEI DV QWNV +NG +R G+ EAL+AFR
Sbjct: 137 ASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFR 196
Query: 542 DMLSSGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYAKC 721
+ML SGVE DE+C+ T L CA GAL+QG WIHEYV KR DVF+GTALVDMYAKC
Sbjct: 197 NMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKC 256
Query: 722 GCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVVLLAV 901
GCID++VEVF M KRN FSW+AMIGGFALHG ++A+ CL+RM +EDGLRPDGVVLL V
Sbjct: 257 GCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGV 316
Query: 902 LTACTHAGCEEEGRLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRP 1081
+ AC HAG +EEG+ LL NM+A YGI+PKHEHYSC VDLLCRAG+L+EAL+LI+ MPM+P
Sbjct: 317 IMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMKP 376
Query: 1082 LASVWGSLLSACKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAG 1261
A+VWG+LLS C+TH N + + G +EDGAYVQLSNIYL AQ+C DA
Sbjct: 377 RAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLAAQKCEDAC 436
Query: 1262 RIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSLRIS 1423
RIR M+ DK IK PGCS+IEV G+VN+FV+GD+ HP +IH +LDL+SL+ S
Sbjct: 437 RIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIHEMLDLVSLQHS 490
>ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing protein
At3g28640 gi|9294278|dbj|BAB02180.1| unnamed protein
product [Arabidopsis thaliana]
gi|332643948|gb|AEE77469.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 530 bits (1364), Expect = e-148
Identities = 258/475 (54%), Positives = 345/475 (72%), Gaps = 4/475 (0%)
Frame = +2
Query: 2 MQQLKTIHAIFITNGHHDNNYAMSKLIS-FTALSN-NGNLIYASQLFDQIPNPNSFIYNT 175
++Q+K+ H++FI +G H N YA+SKL++ F L N N + YAS +FD I PNSF+Y+T
Sbjct: 24 VKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNSFVYDT 83
Query: 176 LIRAYSRSTQPQVSLHYFCLMLKDD--CIVPDYHTLPFVLIACANACCVSLGEGIHCWVL 349
+IR SRS+QP + L YF LM+K++ I P Y T F+++AC AC S+G+ IHCWV+
Sbjct: 84 MIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFFSVGKQIHCWVV 143
Query: 350 KNGWGFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEAL 529
KNG SD H+QT +LR Y+E L++ RKVFDEI + DV +W+V MNG +R G+ E L
Sbjct: 144 KNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGL 203
Query: 530 SAFRDMLSSGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDM 709
FR+ML G+E DE+ V T LTACA GAL QG WIHE+VKK+ DVFVGTALVDM
Sbjct: 204 EVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDM 263
Query: 710 YAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVV 889
YAKCGCI+ AVEVF+++ +RN FSWAA+IGG+A +G+AK+A+ CL+R+ EDG++PD VV
Sbjct: 264 YAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVV 323
Query: 890 LLAVLTACTHAGCEEEGRLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTM 1069
LL VL AC H G EEGR +L NM+A Y I PKHEHYSC VDL+CRAGRL++AL LI+ M
Sbjct: 324 LLGVLAACAHGGFLEEGRSMLENMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKM 383
Query: 1070 PMRPLASVWGSLLSACKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRC 1249
PM+PLASVWG+LL+ C+TH N +E + +E+ A VQLSNIY + QR
Sbjct: 384 PMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEAALVQLSNIYFSVQRN 443
Query: 1250 SDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSL 1414
+A ++R M++ +G++KTPG SV+EV+G V +FV+GDV HP L+IH ++ LLS+
Sbjct: 444 PEASKVRGMIEQRGVRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQIHTVIHLLSV 498
>ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g28660 gi|9294280|dbj|BAB02182.1| unnamed protein
product [Arabidopsis thaliana] gi|20259531|gb|AAM13885.1|
unknown protein [Arabidopsis thaliana]
gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis
thaliana] gi|332643950|gb|AEE77471.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 528 bits (1359), Expect = e-147
Identities = 261/481 (54%), Positives = 346/481 (71%), Gaps = 4/481 (0%)
Frame = +2
Query: 2 MQQLKTIHAIFITNGHHDNNYAMSKLIS-FTALSN-NGNLIYASQLFDQIPNPNSFIYNT 175
++Q+K+ H++FI +G H N YA+SKL++ F L N N + YAS +FD I PNSF+Y+T
Sbjct: 24 VKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNSFVYDT 83
Query: 176 LIRAYSRSTQPQVSLHYFCLMLKDD--CIVPDYHTLPFVLIACANACCVSLGEGIHCWVL 349
+IR SRS+QP + L YF LM+K++ I P Y T F+++AC AC S+G+ IHCWV+
Sbjct: 84 MIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFFSVGKQIHCWVV 143
Query: 350 KNGWGFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEAL 529
KNG SD H+QT +LR Y+E L + RKVFDEI + DV +W+V MNG +R G+ E L
Sbjct: 144 KNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGL 203
Query: 530 SAFRDMLSSGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDM 709
F++ML G+E DE+ V T LTACA GAL QG WIHE+VKK+ DVFVGTALVDM
Sbjct: 204 EVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDM 263
Query: 710 YAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVV 889
YAKCGCI+ AVEVF ++ +RN FSWAA+IGG+A +G+AK+A CLDR+ EDG++PD VV
Sbjct: 264 YAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVV 323
Query: 890 LLAVLTACTHAGCEEEGRLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTM 1069
LL VL AC H G EEGR +L NM+A YGI PKHEHYSC VDL+CRAGRL++AL+LI+ M
Sbjct: 324 LLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKM 383
Query: 1070 PMRPLASVWGSLLSACKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRC 1249
PM+PLASVWG+LL+ C+TH N +E + +E+ A VQLSNIY + QR
Sbjct: 384 PMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEAALVQLSNIYFSVQRN 443
Query: 1250 SDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSLRISDH 1429
+A ++R M++ +GI+KTPG S++EV+G V +FV+GDV HP L+IH ++ LLS+ S
Sbjct: 444 PEAFKVRGMIEQRGIRKTPGWSLLEVDGIVTKFVSGDVSHPNLLQIHTLIHLLSVDASQI 503
Query: 1430 L 1432
L
Sbjct: 504 L 504
>ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297322958|gb|EFH53379.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 399
Score = 464 bits (1193), Expect = e-128
Identities = 221/393 (56%), Positives = 288/393 (73%)
Frame = +2
Query: 236 MLKDDCIVPDYHTLPFVLIACANACCVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLEC 415
M+K++ I P Y T F+++AC AC S+G+ IHCWV+KNG SD H+QT +LR Y+E
Sbjct: 1 MVKEEDIAPSYLTFYFLIVACFKACLFSVGKQIHCWVVKNGVFLSDGHVQTGILRIYVED 60
Query: 416 GSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFRDMLSSGVELDEYCVATGL 595
L++ KVFDEI + DV +W+V MNG +R G+ E L FR+ML GVE DE+ V T L
Sbjct: 61 KVLLDAHKVFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRGVEPDEFSVTTAL 120
Query: 596 TACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNE 775
TACA GAL QG WIHE+VKK+ DVFVGTALVDMYAKCGCI+ AVEVF ++ +RN
Sbjct: 121 TACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIEMAVEVFEKLSRRNV 180
Query: 776 FSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVVLLAVLTACTHAGCEEEGRLLLR 955
FSWAA+IGG+A +G+AK+A+ CLDRM EDG++PD VVLL VL AC H G +EGR +L
Sbjct: 181 FSWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAHGGFLQEGRAMLG 240
Query: 956 NMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRPLASVWGSLLSACKTHGNX 1135
NM+A YGI PKHEHYSC VDL+CRAGRL++AL+LI+ MPM+PLASVWG+LL+ C+TH N
Sbjct: 241 NMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNV 300
Query: 1136 XXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTPGCS 1315
+E + +E+ A VQLSNIY + QR +A ++R M++ +GI+KTPG S
Sbjct: 301 ELGELAVKNLLDLEKGNAEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGIRKTPGWS 360
Query: 1316 VIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSL 1414
V+EV+G V +FV+GDV HP L+IH ++ LLS+
Sbjct: 361 VLEVDGNVTKFVSGDVSHPNLLQIHTVIHLLSV 393
Score = 102 bits (253), Expect = 5e-19
Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 2/236 (0%)
Frame = +2
Query: 113 LIYASQLFDQIPNPNSFIYNTLIRAYSRSTQPQVSLHYFCLMLKDDCIVPDYHTLPFVLI 292
L+ A ++FD+IP P+ ++ L+ Y R L F ML + PD ++ L
Sbjct: 63 LLDAHKVFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRG-VEPDEFSVTTALT 121
Query: 293 ACANACCVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVF 472
ACA ++ G+ IH +V K W SD + TAL+ Y +CG + +VF+++ R+VF
Sbjct: 122 ACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIEMAVEVFEKLSRRNVF 181
Query: 473 QWNVFMNGCLRYGMDVEALSAFRDM-LSSGVELDEYCVATGLTACAHSGALRQGMWIHEY 649
W + G YG +A++ M G++ D + L ACAH G L++G +
Sbjct: 182 SWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAHGGFLQEGRAMLGN 241
Query: 650 VKKRDEFSEDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNEFS-WAAMIGGFALH 814
++ R + + +VD+ + G +D A+++ +M + S W A++ G H
Sbjct: 242 MEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTH 297