BLASTX nr result

ID: Coptis24_contig00004220 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004220
         (2090 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35029.3| unnamed protein product [Vitis vinifera]              616   e-174
ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat...   616   e-174
ref|NP_189505.2| pentatricopeptide repeat-containing protein [Ar...   530   e-148
ref|NP_189507.2| pentatricopeptide repeat-containing protein [Ar...   528   e-147
ref|XP_002877120.1| pentatricopeptide repeat-containing protein ...   464   e-128

>emb|CBI35029.3| unnamed protein product [Vitis vinifera]
          Length = 1596

 Score =  616 bits (1588), Expect = e-174
 Identities = 298/474 (62%), Positives = 365/474 (77%)
 Frame = +2

Query: 2    MQQLKTIHAIFITNGHHDNNYAMSKLISFTALSNNGNLIYASQLFDQIPNPNSFIYNTLI 181
            M+Q K IHA+FI NG H NNYA+SKLISF ALSN+G+L YAS +F QI NPN F YNTLI
Sbjct: 17   MRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLI 76

Query: 182  RAYSRSTQPQVSLHYFCLMLKDDCIVPDYHTLPFVLIACANACCVSLGEGIHCWVLKNGW 361
            RAYSRS+ PQ++LHYF LML D+ + PD HT PF++ AC N+  + LG+ IH WVLKNG 
Sbjct: 77   RAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGV 136

Query: 362  GFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFR 541
              SD+H+QTAL+RFY EC ++ + RK+FDEI   DV QWNV +NG +R G+  EAL+AFR
Sbjct: 137  ASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFR 196

Query: 542  DMLSSGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYAKC 721
            +ML SGVE DE+C+ T L  CA  GAL+QG WIHEYV KR     DVF+GTALVDMYAKC
Sbjct: 197  NMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKC 256

Query: 722  GCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVVLLAV 901
            GCID++VEVF  M KRN FSW+AMIGGFALHG  ++A+ CL+RM +EDGLRPDGVVLL V
Sbjct: 257  GCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGV 316

Query: 902  LTACTHAGCEEEGRLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRP 1081
            + AC HAG +EEG+ LL NM+A YGI+PKHEHYSC VDLLCRAG+L+EAL+LI+ MPM+P
Sbjct: 317  IMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMKP 376

Query: 1082 LASVWGSLLSACKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAG 1261
             A+VWG+LLS C+TH N             + +  G +EDGAYVQLSNIYL AQ+C DA 
Sbjct: 377  RAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLAAQKCEDAC 436

Query: 1262 RIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSLRIS 1423
            RIR M+ DK IK  PGCS+IEV G+VN+FV+GD+ HP   +IH +LDL+SL+ S
Sbjct: 437  RIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIHEMLDLVSLQHS 490


>ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g28640-like [Vitis vinifera]
          Length = 511

 Score =  616 bits (1588), Expect = e-174
 Identities = 298/474 (62%), Positives = 365/474 (77%)
 Frame = +2

Query: 2    MQQLKTIHAIFITNGHHDNNYAMSKLISFTALSNNGNLIYASQLFDQIPNPNSFIYNTLI 181
            M+Q K IHA+FI NG H NNYA+SKLISF ALSN+G+L YAS +F QI NPN F YNTLI
Sbjct: 17   MRQFKAIHALFIVNGLHLNNYAISKLISFCALSNSGSLSYASLIFSQIQNPNLFAYNTLI 76

Query: 182  RAYSRSTQPQVSLHYFCLMLKDDCIVPDYHTLPFVLIACANACCVSLGEGIHCWVLKNGW 361
            RAYSRS+ PQ++LHYF LML D+ + PD HT PF++ AC N+  + LG+ IH WVLKNG 
Sbjct: 77   RAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGV 136

Query: 362  GFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFR 541
              SD+H+QTAL+RFY EC ++ + RK+FDEI   DV QWNV +NG +R G+  EAL+AFR
Sbjct: 137  ASSDRHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFR 196

Query: 542  DMLSSGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYAKC 721
            +ML SGVE DE+C+ T L  CA  GAL+QG WIHEYV KR     DVF+GTALVDMYAKC
Sbjct: 197  NMLVSGVEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKC 256

Query: 722  GCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVVLLAV 901
            GCID++VEVF  M KRN FSW+AMIGGFALHG  ++A+ CL+RM +EDGLRPDGVVLL V
Sbjct: 257  GCIDRSVEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGV 316

Query: 902  LTACTHAGCEEEGRLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRP 1081
            + AC HAG +EEG+ LL NM+A YGI+PKHEHYSC VDLLCRAG+L+EAL+LI+ MPM+P
Sbjct: 317  IMACAHAGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMKP 376

Query: 1082 LASVWGSLLSACKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAG 1261
             A+VWG+LLS C+TH N             + +  G +EDGAYVQLSNIYL AQ+C DA 
Sbjct: 377  RAAVWGALLSGCRTHNNVDLAELAARELLMVGNGDGTEEDGAYVQLSNIYLAAQKCEDAC 436

Query: 1262 RIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSLRIS 1423
            RIR M+ DK IK  PGCS+IEV G+VN+FV+GD+ HP   +IH +LDL+SL+ S
Sbjct: 437  RIRRMIGDKRIKTKPGCSLIEVEGEVNQFVSGDISHPCLAQIHEMLDLVSLQHS 490


>ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName:
            Full=Putative pentatricopeptide repeat-containing protein
            At3g28640 gi|9294278|dbj|BAB02180.1| unnamed protein
            product [Arabidopsis thaliana]
            gi|332643948|gb|AEE77469.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  530 bits (1364), Expect = e-148
 Identities = 258/475 (54%), Positives = 345/475 (72%), Gaps = 4/475 (0%)
 Frame = +2

Query: 2    MQQLKTIHAIFITNGHHDNNYAMSKLIS-FTALSN-NGNLIYASQLFDQIPNPNSFIYNT 175
            ++Q+K+ H++FI +G H N YA+SKL++ F  L N N +  YAS +FD I  PNSF+Y+T
Sbjct: 24   VKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNSFVYDT 83

Query: 176  LIRAYSRSTQPQVSLHYFCLMLKDD--CIVPDYHTLPFVLIACANACCVSLGEGIHCWVL 349
            +IR  SRS+QP + L YF LM+K++   I P Y T  F+++AC  AC  S+G+ IHCWV+
Sbjct: 84   MIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFFSVGKQIHCWVV 143

Query: 350  KNGWGFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEAL 529
            KNG   SD H+QT +LR Y+E   L++ RKVFDEI + DV +W+V MNG +R G+  E L
Sbjct: 144  KNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGL 203

Query: 530  SAFRDMLSSGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDM 709
              FR+ML  G+E DE+ V T LTACA  GAL QG WIHE+VKK+     DVFVGTALVDM
Sbjct: 204  EVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDM 263

Query: 710  YAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVV 889
            YAKCGCI+ AVEVF+++ +RN FSWAA+IGG+A +G+AK+A+ CL+R+  EDG++PD VV
Sbjct: 264  YAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVV 323

Query: 890  LLAVLTACTHAGCEEEGRLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTM 1069
            LL VL AC H G  EEGR +L NM+A Y I PKHEHYSC VDL+CRAGRL++AL LI+ M
Sbjct: 324  LLGVLAACAHGGFLEEGRSMLENMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKM 383

Query: 1070 PMRPLASVWGSLLSACKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRC 1249
            PM+PLASVWG+LL+ C+TH N             +E  +  +E+ A VQLSNIY + QR 
Sbjct: 384  PMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEAALVQLSNIYFSVQRN 443

Query: 1250 SDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSL 1414
             +A ++R M++ +G++KTPG SV+EV+G V +FV+GDV HP  L+IH ++ LLS+
Sbjct: 444  PEASKVRGMIEQRGVRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQIHTVIHLLSV 498


>ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g28660 gi|9294280|dbj|BAB02182.1| unnamed protein
            product [Arabidopsis thaliana] gi|20259531|gb|AAM13885.1|
            unknown protein [Arabidopsis thaliana]
            gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis
            thaliana] gi|332643950|gb|AEE77471.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  528 bits (1359), Expect = e-147
 Identities = 261/481 (54%), Positives = 346/481 (71%), Gaps = 4/481 (0%)
 Frame = +2

Query: 2    MQQLKTIHAIFITNGHHDNNYAMSKLIS-FTALSN-NGNLIYASQLFDQIPNPNSFIYNT 175
            ++Q+K+ H++FI +G H N YA+SKL++ F  L N N +  YAS +FD I  PNSF+Y+T
Sbjct: 24   VKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNSFVYDT 83

Query: 176  LIRAYSRSTQPQVSLHYFCLMLKDD--CIVPDYHTLPFVLIACANACCVSLGEGIHCWVL 349
            +IR  SRS+QP + L YF LM+K++   I P Y T  F+++AC  AC  S+G+ IHCWV+
Sbjct: 84   MIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFFSVGKQIHCWVV 143

Query: 350  KNGWGFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEAL 529
            KNG   SD H+QT +LR Y+E   L + RKVFDEI + DV +W+V MNG +R G+  E L
Sbjct: 144  KNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGL 203

Query: 530  SAFRDMLSSGVELDEYCVATGLTACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDM 709
              F++ML  G+E DE+ V T LTACA  GAL QG WIHE+VKK+     DVFVGTALVDM
Sbjct: 204  EVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDM 263

Query: 710  YAKCGCIDKAVEVFRRMRKRNEFSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVV 889
            YAKCGCI+ AVEVF ++ +RN FSWAA+IGG+A +G+AK+A  CLDR+  EDG++PD VV
Sbjct: 264  YAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVV 323

Query: 890  LLAVLTACTHAGCEEEGRLLLRNMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTM 1069
            LL VL AC H G  EEGR +L NM+A YGI PKHEHYSC VDL+CRAGRL++AL+LI+ M
Sbjct: 324  LLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKM 383

Query: 1070 PMRPLASVWGSLLSACKTHGNXXXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRC 1249
            PM+PLASVWG+LL+ C+TH N             +E  +  +E+ A VQLSNIY + QR 
Sbjct: 384  PMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEAALVQLSNIYFSVQRN 443

Query: 1250 SDAGRIRMMMDDKGIKKTPGCSVIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSLRISDH 1429
             +A ++R M++ +GI+KTPG S++EV+G V +FV+GDV HP  L+IH ++ LLS+  S  
Sbjct: 444  PEAFKVRGMIEQRGIRKTPGWSLLEVDGIVTKFVSGDVSHPNLLQIHTLIHLLSVDASQI 503

Query: 1430 L 1432
            L
Sbjct: 504  L 504


>ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297322958|gb|EFH53379.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 399

 Score =  464 bits (1193), Expect = e-128
 Identities = 221/393 (56%), Positives = 288/393 (73%)
 Frame = +2

Query: 236  MLKDDCIVPDYHTLPFVLIACANACCVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLEC 415
            M+K++ I P Y T  F+++AC  AC  S+G+ IHCWV+KNG   SD H+QT +LR Y+E 
Sbjct: 1    MVKEEDIAPSYLTFYFLIVACFKACLFSVGKQIHCWVVKNGVFLSDGHVQTGILRIYVED 60

Query: 416  GSLVEFRKVFDEIHERDVFQWNVFMNGCLRYGMDVEALSAFRDMLSSGVELDEYCVATGL 595
              L++  KVFDEI + DV +W+V MNG +R G+  E L  FR+ML  GVE DE+ V T L
Sbjct: 61   KVLLDAHKVFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRGVEPDEFSVTTAL 120

Query: 596  TACAHSGALRQGMWIHEYVKKRDEFSEDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNE 775
            TACA  GAL QG WIHE+VKK+     DVFVGTALVDMYAKCGCI+ AVEVF ++ +RN 
Sbjct: 121  TACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIEMAVEVFEKLSRRNV 180

Query: 776  FSWAAMIGGFALHGFAKEAIHCLDRMIMEDGLRPDGVVLLAVLTACTHAGCEEEGRLLLR 955
            FSWAA+IGG+A +G+AK+A+ CLDRM  EDG++PD VVLL VL AC H G  +EGR +L 
Sbjct: 181  FSWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAHGGFLQEGRAMLG 240

Query: 956  NMKALYGIVPKHEHYSCTVDLLCRAGRLNEALELIQTMPMRPLASVWGSLLSACKTHGNX 1135
            NM+A YGI PKHEHYSC VDL+CRAGRL++AL+LI+ MPM+PLASVWG+LL+ C+TH N 
Sbjct: 241  NMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNV 300

Query: 1136 XXXXXXXXXXXQIEHDSGAQEDGAYVQLSNIYLNAQRCSDAGRIRMMMDDKGIKKTPGCS 1315
                        +E  +  +E+ A VQLSNIY + QR  +A ++R M++ +GI+KTPG S
Sbjct: 301  ELGELAVKNLLDLEKGNAEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGIRKTPGWS 360

Query: 1316 VIEVNGKVNEFVAGDVVHPLRLEIHAILDLLSL 1414
            V+EV+G V +FV+GDV HP  L+IH ++ LLS+
Sbjct: 361  VLEVDGNVTKFVSGDVSHPNLLQIHTVIHLLSV 393



 Score =  102 bits (253), Expect = 5e-19
 Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 2/236 (0%)
 Frame = +2

Query: 113 LIYASQLFDQIPNPNSFIYNTLIRAYSRSTQPQVSLHYFCLMLKDDCIVPDYHTLPFVLI 292
           L+ A ++FD+IP P+   ++ L+  Y R       L  F  ML    + PD  ++   L 
Sbjct: 63  LLDAHKVFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRG-VEPDEFSVTTALT 121

Query: 293 ACANACCVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLECGSLVEFRKVFDEIHERDVF 472
           ACA    ++ G+ IH +V K  W  SD  + TAL+  Y +CG +    +VF+++  R+VF
Sbjct: 122 ACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIEMAVEVFEKLSRRNVF 181

Query: 473 QWNVFMNGCLRYGMDVEALSAFRDM-LSSGVELDEYCVATGLTACAHSGALRQGMWIHEY 649
            W   + G   YG   +A++    M    G++ D   +   L ACAH G L++G  +   
Sbjct: 182 SWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAHGGFLQEGRAMLGN 241

Query: 650 VKKRDEFSEDVFVGTALVDMYAKCGCIDKAVEVFRRMRKRNEFS-WAAMIGGFALH 814
           ++ R   +      + +VD+  + G +D A+++  +M  +   S W A++ G   H
Sbjct: 242 MEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTH 297


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