BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004146
         (777 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002509528.1| structural constituent of ribosome, putative...   126   6e-27
ref|NP_566809.1| ribosomal protein S21 family protein [Arabidops...   113   4e-23
ref|XP_002875359.1| hypothetical protein ARALYDRAFT_484499 [Arab...   113   5e-23
ref|XP_002268728.1| PREDICTED: uncharacterized protein LOC100241...   112   9e-23
emb|CAN82190.1| hypothetical protein VITISV_031115 [Vitis vinifera]   112   9e-23

>ref|XP_002509528.1| structural constituent of ribosome, putative [Ricinus communis]
           gi|223549427|gb|EEF50915.1| structural constituent of
           ribosome, putative [Ricinus communis]
          Length = 175

 Score =  126 bits (316), Expect = 6e-27
 Identities = 67/135 (49%), Positives = 90/135 (66%), Gaps = 2/135 (1%)
 Frame = -3

Query: 631 SHSKSLALTSTPIGAAST-VEAIVSPSLANANIMFFKSGYNVQIMVDEGXXXXXXXXXXX 455
           S SK + L +   G+ ST + + ++PSLANANI+FF+S YNVQ++VD+            
Sbjct: 41  SKSKLIPLAAHDSGSLSTELSSAINPSLANANILFFRSAYNVQVIVDDNEPEERLLNRFR 100

Query: 454 XXVSKAGVIPETKRRRYFENSQEEKKRRTRDAAKKNRKRRWAPRIPTPTAGDPALPKKVE 275
             V +AGVI E KRRR+FEN Q+EKKR+TR+AAK+N+KRR   R  T    + +  KK +
Sbjct: 101 REVMRAGVIQECKRRRFFENKQDEKKRKTREAAKRNKKRRPQSRFTTQNKQETSTTKKDD 160

Query: 274 DD-DNWEMPEGGLPY 233
           DD DNWE+PEG LPY
Sbjct: 161 DDGDNWELPEGDLPY 175


>ref|NP_566809.1| ribosomal protein S21 family protein [Arabidopsis thaliana]
           gi|9294081|dbj|BAB01933.1| unnamed protein product
           [Arabidopsis thaliana] gi|332643753|gb|AEE77274.1|
           ribosomal protein S21 family protein [Arabidopsis
           thaliana]
          Length = 183

 Score =  113 bits (283), Expect = 4e-23
 Identities = 60/128 (46%), Positives = 79/128 (61%), Gaps = 4/128 (3%)
 Frame = -3

Query: 607 TSTPIGAASTVEAIVSPSLANANIMFFKSGYNVQIMVDEGXXXXXXXXXXXXXVSKAGVI 428
           +ST    +S + +++ PSLA +N +FF SGYNVQ+ V++              V + GVI
Sbjct: 55  SSTASSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVI 114

Query: 427 PETKRRRYFENSQEEKKRRTRDAAKKNRKRRWAPRIPTPTAGDPAL----PKKVEDDDNW 260
            E KRRRYFEN Q+EKKRRTRDAAK+N+KRR   R    T  + A      KK E++DNW
Sbjct: 115 QECKRRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNW 174

Query: 259 EMPEGGLP 236
           EMP G +P
Sbjct: 175 EMPGGDVP 182


>ref|XP_002875359.1| hypothetical protein ARALYDRAFT_484499 [Arabidopsis lyrata subsp.
           lyrata] gi|297321197|gb|EFH51618.1| hypothetical protein
           ARALYDRAFT_484499 [Arabidopsis lyrata subsp. lyrata]
          Length = 184

 Score =  113 bits (282), Expect = 5e-23
 Identities = 60/129 (46%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
 Frame = -3

Query: 607 TSTPIGAASTVEAIVSPSLANANIMFFKSGYNVQIMVDEGXXXXXXXXXXXXXVSKAGVI 428
           +ST    +S + +++ PSLA +N +FF SGYNVQ+ V++              V + GVI
Sbjct: 55  SSTASSISSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVI 114

Query: 427 PETKRRRYFENSQEEKKRRTRDAAKKNRKRRWAPRIPTPTAGDPAL-----PKKVEDDDN 263
            E KRRRYFEN Q+EKKRRTRDAAK+N+KRR   R    T  + A       KK E++DN
Sbjct: 115 QECKRRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAAATKSKKKDEEEDN 174

Query: 262 WEMPEGGLP 236
           WEMP G +P
Sbjct: 175 WEMPGGDVP 183


>ref|XP_002268728.1| PREDICTED: uncharacterized protein LOC100241260 [Vitis vinifera]
          Length = 188

 Score =  112 bits (280), Expect = 9e-23
 Identities = 58/121 (47%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
 Frame = -3

Query: 589 AASTVEAIVSPSLANANIMFFKSGYNVQIMVDEGXXXXXXXXXXXXXVSKAGVIPETKRR 410
           ++S + A+V PSLA +N +FFKS YNVQ++V++              V +AGVI E KRR
Sbjct: 68  SSSDLMAVVCPSLAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRR 127

Query: 409 RYFENSQEEKKRRTRDAAKKNRKRRWAPRIPTPTAGDPALPKKVEDD--DNWEMPEGGLP 236
           R+FEN Q+EKKR+TR+AAK+NR+RR   R  T  +       K +DD  DNWE+PEG LP
Sbjct: 128 RFFENKQDEKKRKTREAAKRNRRRRPQSRFSTQDSKQEGSKNKKDDDEEDNWEVPEGELP 187

Query: 235 Y 233
           +
Sbjct: 188 F 188


>emb|CAN82190.1| hypothetical protein VITISV_031115 [Vitis vinifera]
          Length = 188

 Score =  112 bits (280), Expect = 9e-23
 Identities = 58/121 (47%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
 Frame = -3

Query: 589 AASTVEAIVSPSLANANIMFFKSGYNVQIMVDEGXXXXXXXXXXXXXVSKAGVIPETKRR 410
           ++S + A+V PSLA +N +FFKS YNVQ++V++              V +AGVI E KRR
Sbjct: 68  SSSDLMAVVCPSLAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRR 127

Query: 409 RYFENSQEEKKRRTRDAAKKNRKRRWAPRIPTPTAGDPALPKKVEDD--DNWEMPEGGLP 236
           R+FEN Q+EKKR+TR+AAK+NR+RR   R  T  +       K +DD  DNWE+PEG LP
Sbjct: 128 RFFENKQDEKKRKTREAAKRNRRRRPQSRFSTQDSKQEGSKNKKDDDEEDNWEVPEGELP 187

Query: 235 Y 233
           +
Sbjct: 188 F 188