BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004137
         (1392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   360   5e-97
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   347   3e-93
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   328   2e-87
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   327   6e-87
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   326   1e-86

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
           vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
           product [Vitis vinifera]
          Length = 297

 Score =  360 bits (924), Expect = 5e-97
 Identities = 186/275 (67%), Positives = 199/275 (72%), Gaps = 4/275 (1%)
 Frame = +2

Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331
           TNPFFW      L FS FLSHVLAF               IA+G NSCNFI+D       
Sbjct: 22  TNPFFWS--TASLPFSKFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFIFDSSSVPAN 79

Query: 332 PVVIETRTTPALSSKLLLNLEEFLTTDQRLTGD----NXXXXXXXXXXXXXXCYIQRVFR 499
           P  +E    PAL S LL  LEEF+T D++L+ +                   CYIQRVFR
Sbjct: 80  PN-LENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRVFR 138

Query: 500 SGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASYIT 679
           +G LHPQPRILCLQGSPDG EQYVAVMN+IFSAQRSMVPIDSCVIG QHSAFLQQASYIT
Sbjct: 139 TGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 198

Query: 680 GGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYICSV 859
           GGVYLKPQ LDGLFQYLSTVFATDL SR  L+LPKPAGVDFRASCFCHK TIDMGYICSV
Sbjct: 199 GGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDMGYICSV 258

Query: 860 CLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 964
           CLSIFCKHHKKCSTCGSVFG+A  +  S  DRKRK
Sbjct: 259 CLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRK 293


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  347 bits (891), Expect = 3e-93
 Identities = 178/275 (64%), Positives = 201/275 (73%), Gaps = 4/275 (1%)
 Frame = +2

Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331
           TNPFFW  P++ LSFS FLSHVLAF               IASG N+C++IYD      Q
Sbjct: 13  TNPFFWTPPSS-LSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYIYDSSSDASQ 71

Query: 332 PVVIETRTTPALSSKLLLNLEEFLTTDQRLTGDNXXXXXXXXXXXXXX----CYIQRVFR 499
            +  E    P+L S LL  LEEF+  D++L  +                   CYIQRVFR
Sbjct: 72  -LGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQRVFR 130

Query: 500 SGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASYIT 679
           SG LHPQPRILCLQGSPDG EQYVAVMN+IFSAQRSMVPIDSC +G  +SAFLQQASYIT
Sbjct: 131 SGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSAFLQQASYIT 190

Query: 680 GGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYICSV 859
           GGVY+KPQHLDGLFQYL+TVFATDL SR+ ++LP+PAGVDFRASCFCHK TIDMGYICSV
Sbjct: 191 GGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTTIDMGYICSV 250

Query: 860 CLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 964
           CLSIFC HHKKCSTCGSVFG+A  + +ST D KRK
Sbjct: 251 CLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRK 285


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
           sativus]
          Length = 295

 Score =  328 bits (841), Expect = 2e-87
 Identities = 170/275 (61%), Positives = 190/275 (69%), Gaps = 4/275 (1%)
 Frame = +2

Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331
           TNPFFW    + L FS FLSHVLAF               I +G  SC ++Y+       
Sbjct: 22  TNPFFWS--TSALPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNH 79

Query: 332 PVVIETRTTPALSSKLLLNLEEFLTTDQRLTGDNXXXXXXXXXXXXXX----CYIQRVFR 499
              +E    PAL ++LL NLEEF+  D++   ++                  CYIQ+VFR
Sbjct: 80  G--LEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR 137

Query: 500 SGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASYIT 679
           SGSLHPQPRILCLQGSPDG EQYVA+MN+IFSAQRSMVPIDSC IG  +SAFLQQASYIT
Sbjct: 138 SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYIT 197

Query: 680 GGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYICSV 859
           GGVYLKPQ +DGLFQYLSTVF TDL SR  L+LPK  GVDFRASCFCHKKTIDMGY+CSV
Sbjct: 198 GGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSV 257

Query: 860 CLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 964
           CLSIFCKHHKKCSTCGSVFGE   E  S    KRK
Sbjct: 258 CLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRK 292


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
           lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
           ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  327 bits (837), Expect = 6e-87
 Identities = 171/278 (61%), Positives = 196/278 (70%), Gaps = 7/278 (2%)
 Frame = +2

Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331
           TNP FW    T ++FS FLSHVLAF               IA+G +SC++IYD       
Sbjct: 22  TNPLFWS--TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTSNH 79

Query: 332 PVVIETRT-TPALSSKLLLNLEEFLTTDQRLTG-----DNXXXXXXXXXXXXXXCYIQRV 493
             +    T  PAL   LL  LE+F+T D+ L+      D               CYIQRV
Sbjct: 80  GNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGSLSMALCYIQRV 139

Query: 494 FRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASY 673
           FRSG LHPQPRILCLQGSPDG EQYVAVMNSIFSAQR MVPIDSC IG Q+SAFLQQASY
Sbjct: 140 FRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASY 199

Query: 674 ITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYIC 853
           ITGGV+  P+ LDGLFQYL+T+FATDL SR+ ++LPKP GVDFRASCFCHKKTIDMGYIC
Sbjct: 200 ITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGVDFRASCFCHKKTIDMGYIC 259

Query: 854 SVCLSIFCKHHKKCSTCGSVFGEAH-PEATSTPDRKRK 964
           SVCLSIFC+HHKKCSTCGSVFG++   +A+S  D+KRK
Sbjct: 260 SVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRK 297


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
           thaliana] gi|21537277|gb|AAM61618.1| unknown
           [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
           At1g18340 [Arabidopsis thaliana]
           gi|332191584|gb|AEE29705.1| transcription initiation
           factor TFIIH subunit H3 [Arabidopsis thaliana]
          Length = 301

 Score =  326 bits (835), Expect = 1e-86
 Identities = 171/278 (61%), Positives = 194/278 (69%), Gaps = 7/278 (2%)
 Frame = +2

Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331
           TNP FW    T ++FS FLSHVLAF               IA+G +SC++IYD       
Sbjct: 22  TNPLFWS--TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTSNH 79

Query: 332 PVVIETRT-TPALSSKLLLNLEEFLTTDQRLTG-----DNXXXXXXXXXXXXXXCYIQRV 493
                  T  PA+   LL  LEEF+T D+ L+      D               CYIQRV
Sbjct: 80  GNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQRV 139

Query: 494 FRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASY 673
           FRSG LHPQPRILCLQGSPDG EQYVAVMNSIFSAQR MVPIDSC IG Q+SAFLQQASY
Sbjct: 140 FRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASY 199

Query: 674 ITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYIC 853
           ITGGV+  P+ LDGLFQYL+T+FATDL SR  ++LPKP GVDFRASCFCHKKTIDMGYIC
Sbjct: 200 ITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGYIC 259

Query: 854 SVCLSIFCKHHKKCSTCGSVFGEAH-PEATSTPDRKRK 964
           SVCLSIFC+HHKKCSTCGSVFG++   +A+S  D+KRK
Sbjct: 260 SVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRK 297