BLASTX nr result
ID: Coptis24_contig00004137
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00004137 (1392 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002284465.1| PREDICTED: general transcription factor IIH ... 360 5e-97 ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2... 347 3e-93 ref|XP_004152842.1| PREDICTED: general transcription factor IIH ... 328 2e-87 ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab... 327 6e-87 ref|NP_564050.1| transcription initiation factor TFIIH subunit H... 326 1e-86 >ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis vinifera] gi|302141830|emb|CBI19033.3| unnamed protein product [Vitis vinifera] Length = 297 Score = 360 bits (924), Expect = 5e-97 Identities = 186/275 (67%), Positives = 199/275 (72%), Gaps = 4/275 (1%) Frame = +2 Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331 TNPFFW L FS FLSHVLAF IA+G NSCNFI+D Sbjct: 22 TNPFFWS--TASLPFSKFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFIFDSSSVPAN 79 Query: 332 PVVIETRTTPALSSKLLLNLEEFLTTDQRLTGD----NXXXXXXXXXXXXXXCYIQRVFR 499 P +E PAL S LL LEEF+T D++L+ + CYIQRVFR Sbjct: 80 PN-LENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRVFR 138 Query: 500 SGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASYIT 679 +G LHPQPRILCLQGSPDG EQYVAVMN+IFSAQRSMVPIDSCVIG QHSAFLQQASYIT Sbjct: 139 TGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 198 Query: 680 GGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYICSV 859 GGVYLKPQ LDGLFQYLSTVFATDL SR L+LPKPAGVDFRASCFCHK TIDMGYICSV Sbjct: 199 GGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDMGYICSV 258 Query: 860 CLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 964 CLSIFCKHHKKCSTCGSVFG+A + S DRKRK Sbjct: 259 CLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRK 293 >ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1| predicted protein [Populus trichocarpa] Length = 289 Score = 347 bits (891), Expect = 3e-93 Identities = 178/275 (64%), Positives = 201/275 (73%), Gaps = 4/275 (1%) Frame = +2 Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331 TNPFFW P++ LSFS FLSHVLAF IASG N+C++IYD Q Sbjct: 13 TNPFFWTPPSS-LSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYIYDSSSDASQ 71 Query: 332 PVVIETRTTPALSSKLLLNLEEFLTTDQRLTGDNXXXXXXXXXXXXXX----CYIQRVFR 499 + E P+L S LL LEEF+ D++L + CYIQRVFR Sbjct: 72 -LGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQRVFR 130 Query: 500 SGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASYIT 679 SG LHPQPRILCLQGSPDG EQYVAVMN+IFSAQRSMVPIDSC +G +SAFLQQASYIT Sbjct: 131 SGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSAFLQQASYIT 190 Query: 680 GGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYICSV 859 GGVY+KPQHLDGLFQYL+TVFATDL SR+ ++LP+PAGVDFRASCFCHK TIDMGYICSV Sbjct: 191 GGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTTIDMGYICSV 250 Query: 860 CLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 964 CLSIFC HHKKCSTCGSVFG+A + +ST D KRK Sbjct: 251 CLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRK 285 >ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis sativus] Length = 295 Score = 328 bits (841), Expect = 2e-87 Identities = 170/275 (61%), Positives = 190/275 (69%), Gaps = 4/275 (1%) Frame = +2 Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331 TNPFFW + L FS FLSHVLAF I +G SC ++Y+ Sbjct: 22 TNPFFWS--TSALPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNH 79 Query: 332 PVVIETRTTPALSSKLLLNLEEFLTTDQRLTGDNXXXXXXXXXXXXXX----CYIQRVFR 499 +E PAL ++LL NLEEF+ D++ ++ CYIQ+VFR Sbjct: 80 G--LEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR 137 Query: 500 SGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASYIT 679 SGSLHPQPRILCLQGSPDG EQYVA+MN+IFSAQRSMVPIDSC IG +SAFLQQASYIT Sbjct: 138 SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYIT 197 Query: 680 GGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYICSV 859 GGVYLKPQ +DGLFQYLSTVF TDL SR L+LPK GVDFRASCFCHKKTIDMGY+CSV Sbjct: 198 GGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSV 257 Query: 860 CLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 964 CLSIFCKHHKKCSTCGSVFGE E S KRK Sbjct: 258 CLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRK 292 >ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata] Length = 301 Score = 327 bits (837), Expect = 6e-87 Identities = 171/278 (61%), Positives = 196/278 (70%), Gaps = 7/278 (2%) Frame = +2 Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331 TNP FW T ++FS FLSHVLAF IA+G +SC++IYD Sbjct: 22 TNPLFWS--TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTSNH 79 Query: 332 PVVIETRT-TPALSSKLLLNLEEFLTTDQRLTG-----DNXXXXXXXXXXXXXXCYIQRV 493 + T PAL LL LE+F+T D+ L+ D CYIQRV Sbjct: 80 GNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGSLSMALCYIQRV 139 Query: 494 FRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASY 673 FRSG LHPQPRILCLQGSPDG EQYVAVMNSIFSAQR MVPIDSC IG Q+SAFLQQASY Sbjct: 140 FRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASY 199 Query: 674 ITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYIC 853 ITGGV+ P+ LDGLFQYL+T+FATDL SR+ ++LPKP GVDFRASCFCHKKTIDMGYIC Sbjct: 200 ITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGVDFRASCFCHKKTIDMGYIC 259 Query: 854 SVCLSIFCKHHKKCSTCGSVFGEAH-PEATSTPDRKRK 964 SVCLSIFC+HHKKCSTCGSVFG++ +A+S D+KRK Sbjct: 260 SVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRK 297 >ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis thaliana] gi|332191584|gb|AEE29705.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana] Length = 301 Score = 326 bits (835), Expect = 1e-86 Identities = 171/278 (61%), Positives = 194/278 (69%), Gaps = 7/278 (2%) Frame = +2 Query: 152 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXXIASGVNSCNFIYDXXXXXXQ 331 TNP FW T ++FS FLSHVLAF IA+G +SC++IYD Sbjct: 22 TNPLFWS--TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTSNH 79 Query: 332 PVVIETRT-TPALSSKLLLNLEEFLTTDQRLTG-----DNXXXXXXXXXXXXXXCYIQRV 493 T PA+ LL LEEF+T D+ L+ D CYIQRV Sbjct: 80 GNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQRV 139 Query: 494 FRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASY 673 FRSG LHPQPRILCLQGSPDG EQYVAVMNSIFSAQR MVPIDSC IG Q+SAFLQQASY Sbjct: 140 FRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASY 199 Query: 674 ITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYIC 853 ITGGV+ P+ LDGLFQYL+T+FATDL SR ++LPKP GVDFRASCFCHKKTIDMGYIC Sbjct: 200 ITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGYIC 259 Query: 854 SVCLSIFCKHHKKCSTCGSVFGEAH-PEATSTPDRKRK 964 SVCLSIFC+HHKKCSTCGSVFG++ +A+S D+KRK Sbjct: 260 SVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRK 297