BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004075
         (1395 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-a...   124   4e-26
ref|XP_002332199.1| predicted protein [Populus trichocarpa] gi|2...   121   4e-25
ref|XP_002317685.1| predicted protein [Populus trichocarpa] gi|2...   121   4e-25
gb|ABK93409.1| unknown [Populus trichocarpa]                          121   4e-25
ref|NP_193777.1| small nuclear ribonucleoprotein associated prot...   120   1e-24

>ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
           [Vitis vinifera] gi|147774905|emb|CAN61706.1|
           hypothetical protein VITISV_001610 [Vitis vinifera]
          Length = 276

 Score =  124 bits (312), Expect = 4e-26
 Identities = 68/114 (59%), Positives = 70/114 (61%)
 Frame = +2

Query: 38  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRXXXXXXXXXXXXXXXXXXXX 217
           LQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDC                        
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDC------------------------ 45

Query: 218 XXXDCEEFRKLPPAKGKKNEEREDXXXXXXXXXXXXXXXSMTVEGPPPPEESRA 379
                EEFRKLPPAKGKKNEERE+               SMTVEGPPPPEESRA
Sbjct: 46  -----EEFRKLPPAKGKKNEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRA 94



 Score = 91.3 bits (225), Expect = 5e-16
 Identities = 39/46 (84%), Positives = 45/46 (97%)
 Frame = +3

Query: 528 AGRGIPTAPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPPIPNMTA 665
           AGRGIPTAPL+QAQPGL+GPVRG+GGPAPGMMQPQISRPP+P ++A
Sbjct: 111 AGRGIPTAPLIQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSA 156


>ref|XP_002332199.1| predicted protein [Populus trichocarpa] gi|222875306|gb|EEF12437.1|
           predicted protein [Populus trichocarpa]
          Length = 289

 Score =  121 bits (304), Expect = 4e-25
 Identities = 69/115 (60%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
 Frame = +2

Query: 38  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRXXXXXXXXXXXXXXXXXXXX 217
           LQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDC                        
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDC------------------------ 45

Query: 218 XXXDCEEFRKLPPAKGKK-NEEREDXXXXXXXXXXXXXXXSMTVEGPPPPEESRA 379
                EEFRKLPPAKGKK NEERED               SMTVEGPPPPEESRA
Sbjct: 46  -----EEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA 95



 Score = 85.1 bits (209), Expect = 4e-14
 Identities = 36/46 (78%), Positives = 42/46 (91%)
 Frame = +3

Query: 528 AGRGIPTAPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPPIPNMTA 665
           AGRGIPTAPL+QAQPGL+GPVRG+GGP+PGMMQPQ  RPP+P  +A
Sbjct: 112 AGRGIPTAPLIQAQPGLAGPVRGVGGPSPGMMQPQFMRPPVPQHSA 157


>ref|XP_002317685.1| predicted protein [Populus trichocarpa] gi|222860750|gb|EEE98297.1|
           predicted protein [Populus trichocarpa]
          Length = 250

 Score =  121 bits (304), Expect = 4e-25
 Identities = 69/115 (60%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
 Frame = +2

Query: 38  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRXXXXXXXXXXXXXXXXXXXX 217
           LQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDC                        
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDC------------------------ 45

Query: 218 XXXDCEEFRKLPPAKGKK-NEEREDXXXXXXXXXXXXXXXSMTVEGPPPPEESRA 379
                EEFRKLPPAKGKK NEERED               SMTVEGPPPPEESRA
Sbjct: 46  -----EEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA 95



 Score = 81.6 bits (200), Expect = 4e-13
 Identities = 38/47 (80%), Positives = 43/47 (91%), Gaps = 2/47 (4%)
 Frame = +3

Query: 528 AGRGIPTAPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPPI--PNMT 662
           AGRGIPTAPLVQAQPGL+GPVRG+GGP+PGMMQPQ+SRP +  P MT
Sbjct: 112 AGRGIPTAPLVQAQPGLAGPVRGVGGPSPGMMQPQLSRPQLSAPPMT 158


>gb|ABK93409.1| unknown [Populus trichocarpa]
          Length = 286

 Score =  121 bits (304), Expect = 4e-25
 Identities = 69/115 (60%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
 Frame = +2

Query: 38  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRXXXXXXXXXXXXXXXXXXXX 217
           LQYINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDC                        
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDC------------------------ 45

Query: 218 XXXDCEEFRKLPPAKGKK-NEEREDXXXXXXXXXXXXXXXSMTVEGPPPPEESRA 379
                EEFRKLPPAKGKK NEERED               SMTVEGPPPPEESRA
Sbjct: 46  -----EEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA 95



 Score = 81.6 bits (200), Expect = 4e-13
 Identities = 38/47 (80%), Positives = 43/47 (91%), Gaps = 2/47 (4%)
 Frame = +3

Query: 528 AGRGIPTAPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPPI--PNMT 662
           AGRGIPTAPLVQAQPGL+GPVRG+GGP+PGMMQPQ+SRP +  P MT
Sbjct: 112 AGRGIPTAPLVQAQPGLAGPVRGVGGPSPGMMQPQLSRPQLSAPPMT 158


>ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|30685110|ref|NP_849414.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|79325195|ref|NP_001031682.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|238480869|ref|NP_001154258.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|5262167|emb|CAB45810.1| putative snRNP
           protein [Arabidopsis thaliana]
           gi|7268840|emb|CAB79044.1| putative snRNP protein
           [Arabidopsis thaliana] gi|28393634|gb|AAO42236.1|
           putative snRNP protein [Arabidopsis thaliana]
           gi|28827492|gb|AAO50590.1| putative snRNP protein
           [Arabidopsis thaliana] gi|222423490|dbj|BAH19715.1|
           AT4G20440 [Arabidopsis thaliana]
           gi|332658930|gb|AEE84330.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658931|gb|AEE84331.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658932|gb|AEE84332.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana] gi|332658933|gb|AEE84333.1| small nuclear
           ribonucleoprotein associated protein B [Arabidopsis
           thaliana]
          Length = 257

 Score =  120 bits (300), Expect = 1e-24
 Identities = 68/115 (59%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
 Frame = +2

Query: 38  LQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRXXXXXXXXXXXXXXXXXXXX 217
           LQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDC                        
Sbjct: 10  LQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDC------------------------ 45

Query: 218 XXXDCEEFRKLPPAKGKK-NEEREDXXXXXXXXXXXXXXXSMTVEGPPPPEESRA 379
                EEFRKLPPAKGKK NEERED               SMTVEGPPPPEESRA
Sbjct: 46  -----EEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA 95



 Score = 84.3 bits (207), Expect = 7e-14
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = +3

Query: 528 AGRGIPTAPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP 647
           AGRG+PT PLVQAQPGLSGPVRG+GGPAPGMMQPQISRPP
Sbjct: 112 AGRGVPTGPLVQAQPGLSGPVRGVGGPAPGMMQPQISRPP 151