BLASTX nr result
ID: Coptis24_contig00004043
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00004043
(1709 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [O... 236 1e-59
emb|CAB05388.1| FCA gamma [Arabidopsis thaliana] gi|57169178|gb|... 227 6e-57
gb|AEE83728.1| RNA binding / abscisic acid binding protein [Arab... 227 8e-57
ref|NP_849543.2| RNA binding / abscisic acid binding protein [Ar... 227 8e-57
emb|CAB05391.1| FCA gamma [Arabidopsis thaliana] 226 1e-56
>gb|AAQ74973.1| flowering time control protein isoform OsFCA-4 [Oryza sativa Indica
Group]
Length = 626
Score = 236 bits (603), Expect = 1e-59
Identities = 165/491 (33%), Positives = 231/491 (47%), Gaps = 89/491 (18%)
Frame = +2
Query: 2 IQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEKIFSPYGLVEDIFLLRDEMKQSR 181
IQVRYADGE+ER GA I KLF+ +LNKQA K++E+IF+PYG VED+++++D M+QSR
Sbjct: 95 IQVRYADGERERHGA--IEHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSR 152
Query: 182 GSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRFAHPKRSKFGEHRNDNAVFSSGFG 361
G GFV+F R+ A+AAM+AL+G YVM GC+QPL++RFA PKR + GE R A GF
Sbjct: 153 GCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKRPRPGESRGGPAFGGPGFS 212
Query: 362 PKFHAPRSIRPAPNHGDAIDRDVQPNVCSLS-------QAHDFASH-------------- 478
P+ A IRP N + R + P+ S Q ++F S
Sbjct: 213 PRSDAALVIRPTANLDEPRGRHMPPDSWHPSSPRSAPHQFNNFGSDNPMAPKGSTVTSTT 272
Query: 479 --------------SVAESGVVPNPATMCSKPSMPEVSPGHHL-----VPLEKXXXXXXX 601
S++ VP+ + M P P ++ GHHL PL+K
Sbjct: 273 DTATFRPQMFSGNGSLSSQTAVPSSSHMGMNP--PPMAQGHHLGGQQIPPLQKLPGLPQN 330
Query: 602 XXXXXXXXTQDTPASSKIQASPFPVQQLGQLQIQTE------------------------ 709
Q P P QQ+GQLQ+
Sbjct: 331 FPVQLQNNQQGQPLQG-------PAQQIGQLQVPQSMGPGSFGQNRLSGQLPVSQPLMQQ 383
Query: 710 -------DVPSTVSQRKKCVPAIQ--------QQSAKPLQQLADQSAQIPAPQEQVLQGI 844
VPS VS + +P Q Q +P+QQ+ Q+ Q+ Q+ LQ
Sbjct: 384 NASVSAVQVPSAVSNSMQAIPGQQHLPSNVAPQMLQQPVQQMPSQAPQLLLQQQAALQSS 443
Query: 845 FQSAHQAPSQGHEQLHLMQHPSQTPVEERKSRDGEQQQQEAARTAGTLPTSETFSVRSQT 1024
+QS+ QA Q +QL LMQ Q+ + ++ G+ Q + S ++ Q
Sbjct: 444 YQSSQQAIYQLQQQLQLMQQQQQSNLNHQQPTQGQPVQSSNPGAPNAIIPSNINTIPQQA 503
Query: 1025 APP----TCEWSEHNCPDGCKYYYNCITKESRWEKPNFSV---TQSKEVQLQKTI---SD 1174
P TC W+EH P+G KYYYN IT+ES+W+KP V Q ++ Q QK +
Sbjct: 504 TSPAVPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYEQQQQQQQQQKLLLLQQH 563
Query: 1175 QQRLQIHQTSS 1207
QQ+L + Q S
Sbjct: 564 QQKLAMQQLQS 574
>emb|CAB05388.1| FCA gamma [Arabidopsis thaliana] gi|57169178|gb|AAW38964.1| FCA
[Arabidopsis thaliana]
Length = 747
Score = 227 bits (579), Expect = 6e-57
Identities = 164/464 (35%), Positives = 222/464 (47%), Gaps = 64/464 (13%)
Frame = +2
Query: 2 IQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEKIFSPYGLVEDIFLLRDEMKQSR 181
+QVRYADGE+ER+G KLF+ +LNKQA EK+VE+IF +G VED++L+RDE +QSR
Sbjct: 194 VQVRYADGERERIGTLEF--KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR 251
Query: 182 GSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRFAHPKRSKFGEHRNDNAVFSSGFG 361
G GFV++ ++ A+AA++ LNGTY M GC+QPL+VRFA PKR K GE R+ G G
Sbjct: 252 GCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESRDMAPPVGLGSG 311
Query: 362 PKFHAPRSIRPAPNHGD-------------AIDRDVQP--NVCSLSQAHDFA-------- 472
P+F A RP N GD A R+V P N DF+
Sbjct: 312 PRFQASGP-RPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATL 370
Query: 473 ---------SHSVAESGVVPNPATMCSKPSMPEV-SPGHHLVPLEKXXXXXXXXXXXXXX 622
+ V +P P S + + G H+ PL+K
Sbjct: 371 PSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNRAAGQHITPLKKPLHSPQGLPLPLRP 430
Query: 623 XTQDTPASSKIQ-----ASPFPVQQLG-----------QLQIQTEDVPSTVSQRK-KCVP 751
T A + +Q +S P QL Q + P+TVS + P
Sbjct: 431 QTNFPGAQAPLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPP 490
Query: 752 AIQQQSAKPLQQLADQSAQIPAPQEQVLQGIFQSAHQAPSQGHEQLHLMQHPSQTPVEER 931
QQQ + +Q + AQ+ + Q Q LQ FQS+ QA SQ +Q+ MQ P+Q +
Sbjct: 491 RSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQ 550
Query: 932 KSRDGEQQQQ-----EAARTAGTLPTSETFSVRSQTAPPT---------CEWSEHNCPDG 1069
R G+QQ A T G+ P S QTA P C W+EH PDG
Sbjct: 551 NGRAGKQQWAGSAIPRVASTTGSTPVSYV-----QTAAPAVSQSVGSVKCTWTEHTSPDG 605
Query: 1070 CKYYYNCITKESRWEKPNFSVTQSKEVQLQKTISDQQRLQIHQT 1201
KYYYN +T ES+WEKP + +E Q Q+ ++ +Q QT
Sbjct: 606 FKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTIQQSQT 649
>gb|AEE83728.1| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
Length = 672
Score = 227 bits (578), Expect = 8e-57
Identities = 164/464 (35%), Positives = 221/464 (47%), Gaps = 64/464 (13%)
Frame = +2
Query: 2 IQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEKIFSPYGLVEDIFLLRDEMKQSR 181
+QVRYADGE+ER+G KLF+ +LNKQA EK+VE+IF +G VED++L+RDE +QSR
Sbjct: 119 VQVRYADGERERIGTLEF--KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR 176
Query: 182 GSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRFAHPKRSKFGEHRNDNAVFSSGFG 361
G GFV++ ++ A+AA++ LNGTY M GC+QPL+VRFA PKR K GE R G G
Sbjct: 177 GCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSG 236
Query: 362 PKFHAPRSIRPAPNHGD-------------AIDRDVQP--NVCSLSQAHDFA-------- 472
P+F A RP N GD A R+V P N DF+
Sbjct: 237 PRFQASGP-RPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATL 295
Query: 473 ---------SHSVAESGVVPNPATMCSKPSMPEV-SPGHHLVPLEKXXXXXXXXXXXXXX 622
+ V +P P S + + G H+ PL+K
Sbjct: 296 PSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNRAAGQHITPLKKPLHSPQGLPLPLRP 355
Query: 623 XTQDTPASSKIQ-----ASPFPVQQLG-----------QLQIQTEDVPSTVSQRK-KCVP 751
T A + +Q +S P QL Q + P+TVS + P
Sbjct: 356 QTNFPGAQAPLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPP 415
Query: 752 AIQQQSAKPLQQLADQSAQIPAPQEQVLQGIFQSAHQAPSQGHEQLHLMQHPSQTPVEER 931
QQQ + +Q + AQ+ + Q Q LQ FQS+ QA SQ +Q+ MQ P+Q +
Sbjct: 416 RSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQ 475
Query: 932 KSRDGEQQQQ-----EAARTAGTLPTSETFSVRSQTAPPT---------CEWSEHNCPDG 1069
R G+QQ A T G+ P S QTA P C W+EH PDG
Sbjct: 476 NGRAGKQQWAGSAIPRVASTTGSTPVSYV-----QTAAPAVSQSVGSVKCTWTEHTSPDG 530
Query: 1070 CKYYYNCITKESRWEKPNFSVTQSKEVQLQKTISDQQRLQIHQT 1201
KYYYN +T ES+WEKP + +E Q Q+ ++ +Q QT
Sbjct: 531 FKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTIQQSQT 574
>ref|NP_849543.2| RNA binding / abscisic acid binding protein [Arabidopsis thaliana]
gi|332658325|gb|AEE83725.1| RNA binding / abscisic acid
binding protein [Arabidopsis thaliana]
Length = 747
Score = 227 bits (578), Expect = 8e-57
Identities = 164/464 (35%), Positives = 221/464 (47%), Gaps = 64/464 (13%)
Frame = +2
Query: 2 IQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEKIFSPYGLVEDIFLLRDEMKQSR 181
+QVRYADGE+ER+G KLF+ +LNKQA EK+VE+IF +G VED++L+RDE +QSR
Sbjct: 194 VQVRYADGERERIGTLEF--KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR 251
Query: 182 GSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRFAHPKRSKFGEHRNDNAVFSSGFG 361
G GFV++ ++ A+AA++ LNGTY M GC+QPL+VRFA PKR K GE R G G
Sbjct: 252 GCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSG 311
Query: 362 PKFHAPRSIRPAPNHGD-------------AIDRDVQP--NVCSLSQAHDFA-------- 472
P+F A RP N GD A R+V P N DF+
Sbjct: 312 PRFQASGP-RPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATL 370
Query: 473 ---------SHSVAESGVVPNPATMCSKPSMPEV-SPGHHLVPLEKXXXXXXXXXXXXXX 622
+ V +P P S + + G H+ PL+K
Sbjct: 371 PSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNRAAGQHITPLKKPLHSPQGLPLPLRP 430
Query: 623 XTQDTPASSKIQ-----ASPFPVQQLG-----------QLQIQTEDVPSTVSQRK-KCVP 751
T A + +Q +S P QL Q + P+TVS + P
Sbjct: 431 QTNFPGAQAPLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPP 490
Query: 752 AIQQQSAKPLQQLADQSAQIPAPQEQVLQGIFQSAHQAPSQGHEQLHLMQHPSQTPVEER 931
QQQ + +Q + AQ+ + Q Q LQ FQS+ QA SQ +Q+ MQ P+Q +
Sbjct: 491 RSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQ 550
Query: 932 KSRDGEQQQQ-----EAARTAGTLPTSETFSVRSQTAPPT---------CEWSEHNCPDG 1069
R G+QQ A T G+ P S QTA P C W+EH PDG
Sbjct: 551 NGRAGKQQWAGSAIPRVASTTGSTPVSYV-----QTAAPAVSQSVGSVKCTWTEHTSPDG 605
Query: 1070 CKYYYNCITKESRWEKPNFSVTQSKEVQLQKTISDQQRLQIHQT 1201
KYYYN +T ES+WEKP + +E Q Q+ ++ +Q QT
Sbjct: 606 FKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTIQQSQT 649
>emb|CAB05391.1| FCA gamma [Arabidopsis thaliana]
Length = 747
Score = 226 bits (577), Expect = 1e-56
Identities = 164/464 (35%), Positives = 220/464 (47%), Gaps = 64/464 (13%)
Frame = +2
Query: 2 IQVRYADGEQERLGASAIGKKLFIVNLNKQAIEKDVEKIFSPYGLVEDIFLLRDEMKQSR 181
+QVRYADGE+ER+G KLF+ +LNKQA EK+VE+IF +G VED++L+RDE +QSR
Sbjct: 194 VQVRYADGERERIGTLEF--KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR 251
Query: 182 GSGFVEFLHRDMAVAAMNALNGTYVMEGCDQPLLVRFAHPKRSKFGEHRNDNAVFSSGFG 361
G GFV++ ++ A+AA++ LNGTY M GC+QPL+VRFA PKR K GE R G G
Sbjct: 252 GCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSG 311
Query: 362 PKFHAPRSIRPAPNHGD-------------AIDRDVQP--NVCSLSQAHDF--------- 469
P+F A RP N GD A R+V P N DF
Sbjct: 312 PRFQASGP-RPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFPPKPGQATL 370
Query: 470 --------ASHSVAESGVVPNPATMCSKPSMPEV-SPGHHLVPLEKXXXXXXXXXXXXXX 622
+ V +P P S + + G H+ PL+K
Sbjct: 371 PSNQGGPLGGYGVPPLNPLPVPGVSSSATLQQQNRAAGQHITPLKKPLHSPQGLPLPLRP 430
Query: 623 XTQDTPASSKIQ-----ASPFPVQQLG-----------QLQIQTEDVPSTVSQRK-KCVP 751
T A + +Q +S P QL Q + P+TVS + P
Sbjct: 431 QTNFPGAQAPLQNPYAYSSQLPTSQLPPQQNISRATAPQTPLNINLRPTTVSSATVQFPP 490
Query: 752 AIQQQSAKPLQQLADQSAQIPAPQEQVLQGIFQSAHQAPSQGHEQLHLMQHPSQTPVEER 931
QQQ + +Q + AQ+ + Q Q LQ FQS+ QA SQ +Q+ MQ P+Q +
Sbjct: 491 RSQQQPLQKMQHPPSELAQLLSQQTQSLQATFQSSQQAISQLQQQVQSMQQPNQNLPLSQ 550
Query: 932 KSRDGEQQQQ-----EAARTAGTLPTSETFSVRSQTAPPT---------CEWSEHNCPDG 1069
R G+QQ A T G+ P S QTA P C W+EH PDG
Sbjct: 551 NGRAGKQQWAGSAIPRVASTTGSTPVSYV-----QTAAPAVSQSVGSVKCTWTEHTSPDG 605
Query: 1070 CKYYYNCITKESRWEKPNFSVTQSKEVQLQKTISDQQRLQIHQT 1201
KYYYN +T ES+WEKP + +E Q Q+ ++ +Q QT
Sbjct: 606 FKYYYNGLTGESKWEKPEEMIVFEREQQKQQQHQEKPTIQQSQT 649