BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00004009
         (667 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283987.1| PREDICTED: 50S ribosomal protein 5, chloropl...    66   7e-09
emb|CBI32867.3| unnamed protein product [Vitis vinifera]               65   9e-09
ref|XP_002878118.1| hypothetical protein ARALYDRAFT_486132 [Arab...    65   2e-08
ref|NP_191250.1| plastid-specific 50S ribosomal protein 5 [Arabi...    62   1e-07
ref|XP_004144312.1| PREDICTED: 50S ribosomal protein 5, chloropl...    59   6e-07

>ref|XP_002283987.1| PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Vitis
           vinifera]
          Length = 144

 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 50/128 (39%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
 Frame = +3

Query: 105 SMSVTATPM--FMLQRKAINLKPKSSYNNV-LRVCTHLERGALVVCAASSDIDG--SDAG 269
           +M++TATP+  F+++    +LK   S+N V L     +++   V+  ASSD+DG   D G
Sbjct: 20  TMAITATPVSRFLVKPNDTHLK---SFNGVRLHAPFTVKQRDGVIVKASSDVDGVAPDGG 76

Query: 270 TT----EPETVPVEKLPLESKKQLLFEAXXXXXXXXXXXXXXXXXXXXXXXXXIGRWPPS 437
            T    E + VPVE LPLESK QL  E                           GRWPPS
Sbjct: 77  ETASEGEEDVVPVENLPLESKLQLKLEQKLRMKIAKKIRLRRKRLVRKRRMRKKGRWPPS 136

Query: 438 KMKKNKNV 461
           KMKKNKNV
Sbjct: 137 KMKKNKNV 144


>emb|CBI32867.3| unnamed protein product [Vitis vinifera]
          Length = 124

 Score = 65.5 bits (158), Expect = 9e-09
 Identities = 50/127 (39%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
 Frame = +3

Query: 108 MSVTATPM--FMLQRKAINLKPKSSYNNV-LRVCTHLERGALVVCAASSDIDG--SDAGT 272
           M++TATP+  F+++    +LK   S+N V L     +++   V+  ASSD+DG   D G 
Sbjct: 1   MAITATPVSRFLVKPNDTHLK---SFNGVRLHAPFTVKQRDGVIVKASSDVDGVAPDGGE 57

Query: 273 T----EPETVPVEKLPLESKKQLLFEAXXXXXXXXXXXXXXXXXXXXXXXXXIGRWPPSK 440
           T    E + VPVE LPLESK QL  E                           GRWPPSK
Sbjct: 58  TASEGEEDVVPVENLPLESKLQLKLEQKLRMKIAKKIRLRRKRLVRKRRMRKKGRWPPSK 117

Query: 441 MKKNKNV 461
           MKKNKNV
Sbjct: 118 MKKNKNV 124


>ref|XP_002878118.1| hypothetical protein ARALYDRAFT_486132 [Arabidopsis lyrata subsp.
           lyrata] gi|297323956|gb|EFH54377.1| hypothetical protein
           ARALYDRAFT_486132 [Arabidopsis lyrata subsp. lyrata]
          Length = 148

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
 Frame = +3

Query: 90  SSPPLSMSVTATPMFMLQRKAINLKPKSSYNNVLRVCTHLERGALVVCAASSDIDGSDAG 269
           SS  L  S  A+P++ L+  A+  K + S +      +H    A+VV AA+S +DG++  
Sbjct: 17  SSRLLQPSSFASPVWSLKPNAVESKNRVSLSAYSLNSSHGRAVAIVVKAAASGVDGAEPE 76

Query: 270 TTE-PETV----PVEKLPLESKK---QLLFEAXXXXXXXXXXXXXXXXXXXXXXXXXIGR 425
           + E P TV    PV+KLPLESK+   +LL E                           GR
Sbjct: 77  SNEEPNTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRRKRLVRKRRMRKKGR 136

Query: 426 WPPSKMKKNKNV 461
           WPPSKMKKNKNV
Sbjct: 137 WPPSKMKKNKNV 148


>ref|NP_191250.1| plastid-specific 50S ribosomal protein 5 [Arabidopsis thaliana]
           gi|75173974|sp|Q9LER7.1|PSRP5_ARATH RecName: Full=50S
           ribosomal protein 5, chloroplastic; AltName:
           Full=Plastid-specific 50S ribosomal protein 5;
           Short=PSRP-5; Flags: Precursor
           gi|9663010|emb|CAC00754.1| ribosomal protein,
           chloroplast [Arabidopsis thaliana]
           gi|48310581|gb|AAT41842.1| At3g56910 [Arabidopsis
           thaliana] gi|332646064|gb|AEE79585.1| plastid-specific
           50S ribosomal protein 5 [Arabidopsis thaliana]
          Length = 148

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 55/148 (37%), Positives = 73/148 (49%), Gaps = 17/148 (11%)
 Frame = +3

Query: 69  MALLQIFSSPPLSMSVTATPMFMLQRKA-----INLKPKS--SYNNVLRVCTHLE--RGA 221
           MALL   S P LS   +++   +LQ  +     ++LKP +  S N V      L    G 
Sbjct: 1   MALLCFNSLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESKNRVSLSAYSLNSSHGR 60

Query: 222 LVVCAASSDIDGSDAGTTE-PETV----PVEKLPLESKK---QLLFEAXXXXXXXXXXXX 377
           +VV AA+S +DG++  + E P+TV    PV+KLPLESK+   +LL E             
Sbjct: 61  IVVKAAASGVDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRL 120

Query: 378 XXXXXXXXXXXXXIGRWPPSKMKKNKNV 461
                         GRWPPSKMKKNKNV
Sbjct: 121 RRKRLVRKRKMRKKGRWPPSKMKKNKNV 148


>ref|XP_004144312.1| PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Cucumis
           sativus]
          Length = 153

 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 46/132 (34%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
 Frame = +3

Query: 93  SPPLSMSVTATPMFMLQRKAINLKPKSSYNNVLRVCTHLERGALVVCAASSDIDGS---D 263
           SP      +A P  ML  K I  +PK      LR  + +E  A +V  A+S+ D +   D
Sbjct: 22  SPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFVENTASLVVKAASETDATGETD 81

Query: 264 AGTTEP------ETVPVEKLPLESKKQLLFEAXXXXXXXXXXXXXXXXXXXXXXXXXIGR 425
           +   +P      E VPV+KLPLESK Q   E                           GR
Sbjct: 82  SSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGR 141

Query: 426 WPPSKMKKNKNV 461
           WPPSKMKK KNV
Sbjct: 142 WPPSKMKKLKNV 153